Wall clock time and date at job start Wed Apr 1 2020 04:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32143 * 119.90536 * 2 1 4 4 C 1.32079 * 120.07327 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.06326 * 179.97438 * 4 3 2 6 6 C 1.39445 * 119.87143 * 359.97438 * 4 3 2 7 7 C 1.48152 * 120.09216 * 180.02562 * 6 4 3 8 8 O 1.21508 * 120.00130 * 284.05629 * 7 6 4 9 9 N 1.34779 * 119.99761 * 104.06284 * 7 6 4 10 10 C 1.46497 * 119.99923 * 5.10527 * 9 7 6 11 11 C 1.46504 * 119.99674 * 185.10606 * 9 7 6 12 12 C 1.53002 * 109.46797 * 239.99637 * 11 9 7 13 13 C 1.53001 * 109.46887 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46804 * 60.00632 * 13 12 11 15 15 N 1.46496 * 109.47264 * 179.97438 * 14 13 12 16 16 C 1.36939 * 120.00096 * 274.99749 * 15 14 13 17 17 H 1.08000 * 119.99690 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00235 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00055 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00074 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47122 * 89.99531 * 20 18 16 22 22 H 1.48497 * 109.47313 * 209.99868 * 20 18 16 23 23 H 1.48501 * 109.46936 * 330.00046 * 20 18 16 24 24 C 1.53006 * 109.46945 * 299.99733 * 14 13 12 25 25 C 1.52998 * 109.47294 * 59.99953 * 24 14 13 26 26 N 1.33002 * 119.80870 * 0.02562 * 6 4 3 27 27 C 1.31804 * 119.92424 * 359.71324 * 26 6 4 28 28 C 1.50698 * 119.93559 * 180.29343 * 27 26 6 29 29 H 1.09001 * 109.47151 * 90.00198 * 1 2 3 30 30 H 1.09008 * 109.47525 * 330.00687 * 1 2 3 31 31 H 1.08994 * 109.47555 * 210.00226 * 1 2 3 32 32 H 1.09003 * 109.47172 * 85.44354 * 5 4 3 33 33 H 1.08996 * 109.47252 * 205.44131 * 5 4 3 34 34 H 1.08996 * 109.47306 * 325.44280 * 5 4 3 35 35 H 1.09001 * 109.47277 * 84.76287 * 10 9 7 36 36 H 1.08999 * 109.47089 * 204.75656 * 10 9 7 37 37 H 1.08996 * 109.47167 * 324.75753 * 10 9 7 38 38 H 1.08998 * 109.47008 * 359.97438 * 11 9 7 39 39 H 1.08994 * 109.47562 * 300.00612 * 12 11 9 40 40 H 1.09004 * 109.46852 * 60.00761 * 12 11 9 41 41 H 1.08994 * 109.47708 * 300.00754 * 13 12 11 42 42 H 1.09004 * 109.47139 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.47416 * 59.99121 * 14 13 12 44 44 H 0.96999 * 120.00267 * 94.99713 * 15 14 13 45 45 H 0.96996 * 120.00239 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.47129 * 300.00421 * 24 14 13 47 47 H 1.09001 * 109.46758 * 180.02562 * 24 14 13 48 48 H 1.08994 * 109.47845 * 179.97438 * 25 24 14 49 49 H 1.09008 * 109.47128 * 59.99891 * 25 24 14 50 50 H 1.08994 * 109.47265 * 270.26539 * 28 27 26 51 51 H 1.08997 * 109.47282 * 30.26656 * 28 27 26 52 52 H 1.09000 * 109.46999 * 150.26478 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4558 -0.0001 6 6 4.1846 -0.0578 0.0016 7 6 5.6661 -0.0592 0.0027 8 8 6.2747 0.1954 -1.0177 9 7 6.3388 -0.3429 1.1357 10 6 5.6093 -0.7589 2.3360 11 6 7.7996 -0.2353 1.1666 12 6 8.4040 -1.5975 1.5130 13 6 9.9295 -1.4853 1.5447 14 6 10.3436 -0.4599 2.6022 15 7 11.8043 -0.3528 2.6330 16 6 12.5394 -1.2299 3.3851 17 1 12.0422 -2.0008 3.9551 18 6 13.9235 -1.1288 3.4139 19 7 14.6300 -1.9722 4.1363 20 14 14.7834 0.2041 2.4274 21 1 14.9251 1.4242 3.2621 22 1 16.1282 -0.2736 2.0167 23 1 13.9805 0.5215 1.2191 24 6 9.7391 0.9023 2.2558 25 6 8.2135 0.7901 2.2239 26 7 3.5165 -1.2079 0.0016 27 6 2.1985 -1.2026 0.0063 28 6 1.4413 -2.5055 0.0130 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 0.8901 0.5137 31 1 -0.3634 -0.8899 0.5138 32 1 4.3475 2.8121 1.0242 33 1 5.2234 2.3080 -0.4410 34 1 3.6852 3.1922 -0.5837 35 1 5.4255 -1.8325 2.2958 36 1 6.2016 -0.5247 3.2206 37 1 4.6581 -0.2290 2.3850 38 1 8.1611 0.0843 0.1893 39 1 8.0424 -1.9176 2.4902 40 1 8.1094 -2.3279 0.7595 41 1 10.2908 -1.1654 0.5674 42 1 10.3602 -2.4557 1.7920 43 1 9.9823 -0.7797 3.5795 44 1 12.2508 0.3393 2.1207 45 1 15.5972 -1.9013 4.1568 46 1 10.1002 1.2222 1.2784 47 1 10.0344 1.6329 3.0088 48 1 7.7828 1.7606 1.9776 49 1 7.8522 0.4702 3.2014 50 1 1.2592 -2.8252 -1.0130 51 1 2.0280 -3.2641 0.5311 52 1 0.4891 -2.3697 0.5257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963650187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:09 Heat of formation + Delta-G solvation = -9.876093 kcal Electronic energy + Delta-G solvation = -30921.847972 eV Core-core repulsion = 26920.291594 eV Total energy + Delta-G solvation = -4001.556377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.68915 -41.14494 -39.40757 -36.98270 -36.12435 -35.62343 -34.98361 -33.06250 -31.74310 -31.37335 -30.27299 -29.39840 -28.02888 -27.18758 -25.37846 -24.55193 -23.67334 -23.43080 -22.38120 -21.11728 -20.52758 -19.56392 -19.33642 -18.45298 -17.87512 -16.87568 -16.55559 -16.40841 -16.22300 -16.14638 -15.53541 -15.10375 -15.00215 -14.64760 -14.62517 -14.52971 -14.37790 -14.26274 -14.02295 -13.86954 -13.66130 -13.66009 -13.52753 -13.33636 -13.29590 -13.13759 -13.10644 -12.88958 -12.79104 -12.49827 -12.42385 -12.16210 -12.07381 -12.00908 -11.90041 -11.78700 -11.54532 -11.44325 -11.14232 -10.89647 -10.21577 -9.94682 -9.81352 -9.28865 -8.00595 -5.33131 -0.58661 -0.09837 1.15527 1.38702 1.41285 1.48512 1.63790 2.34249 2.49666 2.79119 2.91445 3.22277 3.30250 3.35611 3.56484 3.69119 3.78708 3.83260 3.91970 4.06552 4.09419 4.17690 4.28747 4.31956 4.43346 4.47913 4.49838 4.52097 4.55248 4.60428 4.64450 4.69345 4.72582 4.76199 4.82796 4.84603 4.91045 4.97396 5.04372 5.07378 5.08766 5.09869 5.19657 5.23881 5.39302 5.44757 5.48256 5.58065 5.80240 6.05168 6.12547 6.24103 6.56897 6.79410 7.10303 7.87706 8.05967 9.20929 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.002125 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.981245 B =13170.966508 C =13662.992017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.100 3.900 3 N -0.450 5.450 4 C 0.107 3.893 5 C -0.106 4.106 6 C 0.023 3.977 7 C 0.584 3.416 8 O -0.563 6.563 9 N -0.587 5.587 10 C 0.079 3.921 11 C 0.144 3.856 12 C -0.109 4.109 13 C -0.124 4.124 14 C 0.176 3.824 15 N -0.753 5.753 16 C -0.223 4.223 17 H 0.058 0.942 18 C -0.068 4.068 19 N -0.985 5.985 20 Si 0.953 3.047 21 H -0.277 1.277 22 H -0.299 1.299 23 H -0.255 1.255 24 C -0.116 4.116 25 C -0.108 4.108 26 N -0.429 5.429 27 C 0.069 3.931 28 C -0.101 4.101 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.364 0.636 45 H 0.256 0.744 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.094 0.906 51 H 0.078 0.922 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.584 6.100 -6.747 36.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.043 4.043 3 N -0.166 5.166 4 C -0.032 4.032 5 C -0.164 4.164 6 C -0.118 4.118 7 C 0.370 3.630 8 O -0.441 6.441 9 N -0.317 5.317 10 C -0.063 4.063 11 C 0.041 3.959 12 C -0.148 4.148 13 C -0.165 4.165 14 C 0.068 3.932 15 N -0.396 5.396 16 C -0.354 4.354 17 H 0.076 0.924 18 C -0.259 4.259 19 N -0.636 5.636 20 Si 0.781 3.219 21 H -0.203 1.203 22 H -0.226 1.226 23 H -0.179 1.179 24 C -0.154 4.154 25 C -0.147 4.147 26 N -0.145 5.145 27 C -0.074 4.074 28 C -0.158 4.158 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.197 0.803 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.113 0.887 51 H 0.097 0.903 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -35.161 6.085 -7.112 36.386 hybrid contribution 1.545 0.206 -0.600 1.670 sum -33.616 6.290 -7.712 35.059 Atomic orbital electron populations 1.21014 0.84196 1.05824 1.05099 1.23086 1.00493 0.88108 0.92563 1.68317 1.07181 1.29953 1.11152 1.22349 0.90604 0.96133 0.94075 1.20834 0.98997 0.91595 1.04975 1.21626 0.94821 0.91273 1.04098 1.17928 0.85689 0.76019 0.83386 1.90788 1.69289 1.50899 1.33170 1.47867 1.07184 1.65066 1.11538 1.21914 0.96721 1.00664 0.87005 1.21178 0.77467 0.96236 1.00982 1.21712 0.94750 0.96101 1.02255 1.22018 0.94433 1.00141 0.99913 1.20464 0.81828 0.94329 0.96586 1.42851 1.03001 1.37183 1.56555 1.19032 0.89341 1.07938 1.19122 0.92394 1.25489 0.97071 1.01570 1.01762 1.69879 1.05790 1.41196 1.46718 0.85430 0.77640 0.79319 0.79513 1.20281 1.22633 1.17943 1.21695 0.94938 0.96699 1.02111 1.21737 0.94827 0.98938 0.99204 1.68254 1.09867 1.28008 1.08400 1.22829 0.89267 0.98836 0.96508 1.20946 1.00045 0.90017 1.04799 0.88157 0.89663 0.86764 0.87841 0.91105 0.88560 0.91708 0.88150 0.91634 0.89871 0.90345 0.92598 0.93187 0.93830 0.93238 0.80307 0.93506 0.92020 0.90686 0.90075 0.89737 0.88725 0.90328 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 9.79 71.23 0.70 0.16 16 2 C 0.10 1.46 6.79 42.63 0.29 1.75 16 3 N -0.45 -8.69 10.34 -170.49 -1.76 -10.45 16 4 C 0.11 2.29 6.82 42.81 0.29 2.59 16 5 C -0.11 -1.85 9.89 71.23 0.70 -1.15 16 6 C 0.02 0.55 4.69 41.89 0.20 0.75 16 7 C 0.58 16.05 6.01 86.88 0.52 16.58 16 8 O -0.56 -19.56 15.81 -3.74 -0.06 -19.61 16 9 N -0.59 -13.50 2.76 -825.67 -2.28 -15.78 16 10 C 0.08 1.33 9.22 127.77 1.18 2.51 16 11 C 0.14 3.61 2.51 44.99 0.11 3.72 16 12 C -0.11 -2.96 5.20 30.60 0.16 -2.80 16 13 C -0.12 -4.28 5.50 30.60 0.17 -4.11 16 14 C 0.18 6.35 2.77 45.00 0.12 6.47 16 15 N -0.75 -34.79 4.93 -322.93 -1.59 -36.38 16 16 C -0.22 -12.66 10.41 84.03 0.87 -11.79 16 17 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 19 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 20 Si 0.95 46.10 27.74 68.60 1.90 48.01 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 23 H -0.25 -11.24 6.52 99.48 0.65 -10.59 16 24 C -0.12 -3.22 5.39 30.60 0.16 -3.06 16 25 C -0.11 -2.36 5.19 30.59 0.16 -2.20 16 26 N -0.43 -9.69 10.32 -172.52 -1.78 -11.47 16 27 C 0.07 1.10 6.79 42.68 0.29 1.39 16 28 C -0.10 -0.73 9.78 71.24 0.70 -0.03 16 29 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.11 -0.06 5.93 -2.39 -0.01 -0.07 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.47 6.46 -2.39 -0.02 1.45 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.36 6.44 -2.39 -0.02 1.34 16 37 H 0.06 1.03 6.99 -2.39 -0.02 1.01 16 38 H 0.08 2.48 6.91 -2.39 -0.02 2.46 16 39 H 0.08 1.91 7.67 -2.39 -0.02 1.89 16 40 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 44 H 0.36 16.27 5.66 -92.71 -0.52 15.75 16 45 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.08 1.59 6.67 -2.38 -0.02 1.58 16 50 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.12 0.06 5.94 -2.39 -0.01 0.05 16 Total: -1.00 -78.86 407.81 2.17 -76.69 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.34 Total: 25.08 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 7.10 Total: 7.21 kcal Atomic # 7 Polarization: -130.26 SS G_CDS: -7.11 Total: -137.37 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.06 Total: -19.61 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.01 kcal Total: -78.86 2.17 -76.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963650187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.810 kcal (2) G-P(sol) polarization free energy of solvation -78.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds