Wall clock time and date at job start Wed Apr 1 2020 04:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32133 * 119.90264 * 2 1 4 4 C 1.32091 * 120.07072 * 179.76660 * 3 2 1 5 5 C 1.50696 * 120.06326 * 180.28356 * 4 3 2 6 6 C 1.39444 * 119.86855 * 0.51170 * 4 3 2 7 7 C 1.48147 * 120.09259 * 179.76539 * 6 4 3 8 8 O 1.21518 * 120.00382 * 354.23281 * 7 6 4 9 9 N 1.34783 * 119.99997 * 174.22654 * 7 6 4 10 10 C 1.46497 * 120.00037 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46702 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.44537 * 64.94757 * 11 10 9 13 13 C 1.54865 * 109.44656 * 184.86519 * 11 10 9 14 14 C 1.47087 * 110.32201 * 191.29428 * 13 11 10 15 15 C 1.52568 * 114.33220 * 297.19252 * 14 13 11 16 16 C 1.50875 * 109.34921 * 85.02297 * 15 14 13 17 17 C 1.53945 * 110.09836 * 268.11816 * 16 15 14 18 18 N 1.44576 * 109.45046 * 304.99817 * 11 10 9 19 19 C 1.36940 * 118.64205 * 329.26571 * 18 11 10 20 20 H 1.07994 * 119.99913 * 329.37344 * 19 18 11 21 21 C 1.38810 * 119.99771 * 149.36759 * 19 18 11 22 22 N 1.31620 * 120.00307 * 349.77454 * 21 19 18 23 23 Si 1.86803 * 120.00048 * 169.76603 * 21 19 18 24 24 H 1.48496 * 109.46882 * 60.00209 * 23 21 19 25 25 H 1.48495 * 109.47576 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46789 * 300.00506 * 23 21 19 27 27 N 1.32998 * 119.80798 * 359.74547 * 6 4 3 28 28 C 1.31802 * 119.92861 * 0.02562 * 27 6 4 29 29 C 1.50703 * 119.93936 * 179.97438 * 28 27 6 30 30 H 1.08993 * 109.46872 * 269.72212 * 1 2 3 31 31 H 1.08999 * 109.47463 * 149.71735 * 1 2 3 32 32 H 1.09007 * 109.46778 * 29.71917 * 1 2 3 33 33 H 1.09005 * 109.46773 * 263.59528 * 5 4 3 34 34 H 1.08999 * 109.47644 * 23.59253 * 5 4 3 35 35 H 1.08997 * 109.47371 * 143.59658 * 5 4 3 36 36 H 0.97007 * 119.99511 * 359.97438 * 9 7 6 37 37 H 1.08994 * 109.46773 * 299.99780 * 10 9 7 38 38 H 1.08997 * 109.47504 * 60.00190 * 10 9 7 39 39 H 1.09003 * 109.33129 * 311.55426 * 13 11 10 40 40 H 1.08998 * 109.32891 * 71.03212 * 13 11 10 41 41 H 1.09005 * 108.51558 * 175.94114 * 14 13 11 42 42 H 1.08997 * 108.39197 * 58.35876 * 14 13 11 43 43 H 1.09003 * 109.48726 * 325.06331 * 15 14 13 44 44 H 1.08999 * 109.51581 * 205.00199 * 15 14 13 45 45 H 1.08998 * 109.36833 * 147.92594 * 16 15 14 46 46 H 1.09000 * 109.26845 * 28.24233 * 16 15 14 47 47 H 1.08998 * 108.94718 * 279.87462 * 17 16 15 48 48 H 1.09000 * 108.87944 * 161.19989 * 17 16 15 49 49 H 0.96999 * 120.00227 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.46692 * 270.02188 * 29 28 27 51 51 H 1.09001 * 109.46739 * 30.01822 * 29 28 27 52 52 H 1.08993 * 109.47426 * 150.01872 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1454 0.0000 4 6 3.4866 1.1493 0.0047 5 6 4.2377 2.4557 0.0111 6 6 4.1847 -0.0578 -0.0012 7 6 5.6661 -0.0592 -0.0013 8 8 6.2748 0.9877 -0.1020 9 7 6.3389 -1.2218 0.1105 10 6 7.8039 -1.2231 0.1110 11 6 8.3125 -2.6597 0.2483 12 1 8.0228 -3.2329 -0.6323 13 6 9.8561 -2.6505 0.3723 14 6 10.3877 -4.0151 0.2350 15 6 9.9275 -4.9813 1.3224 16 6 8.5898 -5.5646 0.9393 17 6 7.4522 -4.7096 1.5264 18 7 7.7347 -3.2642 1.4278 19 6 7.4370 -2.4626 2.4974 20 1 8.0270 -1.5790 2.6907 21 6 6.3768 -2.7858 3.3330 22 7 5.5362 -3.7392 2.9910 23 14 6.1429 -1.8679 4.9430 24 1 5.9526 -0.4216 4.6650 25 1 4.9478 -2.3987 5.6465 26 1 7.3431 -2.0539 5.7976 27 7 3.5166 -1.2078 -0.0064 28 6 2.1986 -1.2026 -0.0064 29 6 1.4413 -2.5056 -0.0128 30 1 -0.3633 -0.0050 1.0276 31 1 -0.3634 -0.8874 -0.5182 32 1 -0.3633 0.8926 -0.5095 33 1 4.5218 2.7165 -1.0085 34 1 3.6010 3.2390 0.4224 35 1 5.1337 2.3568 0.6238 36 1 5.8531 -2.0575 0.1913 37 1 8.1679 -0.7971 -0.8239 38 1 8.1676 -0.6270 0.9479 39 1 10.2772 -2.0190 -0.4101 40 1 10.1375 -2.2499 1.3461 41 1 11.4765 -3.9659 0.2540 42 1 10.0771 -4.4095 -0.7324 43 1 9.8340 -4.4469 2.2679 44 1 10.6572 -5.7839 1.4289 45 1 8.5146 -6.5809 1.3260 46 1 8.5037 -5.5839 -0.1471 47 1 7.3167 -4.9729 2.5754 48 1 6.5316 -4.9280 0.9853 49 1 4.7951 -3.9648 3.5748 50 1 1.2592 -2.8148 -1.0421 51 1 2.0281 -3.2693 0.4976 52 1 0.4892 -2.3750 0.5013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968944807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:25 Heat of formation + Delta-G solvation = 21.390799 kcal Electronic energy + Delta-G solvation = -32482.985713 eV Core-core repulsion = 28482.785169 eV Total energy + Delta-G solvation = -4000.200543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.23826 -39.01744 -37.97041 -35.03137 -34.36928 -34.10319 -33.43495 -31.70875 -30.67198 -29.98116 -28.92953 -27.16976 -26.07748 -25.28486 -23.50104 -23.40179 -22.43715 -21.46687 -20.15803 -19.62222 -19.13881 -18.03663 -17.20948 -15.97792 -15.69786 -15.46691 -15.12249 -15.04699 -14.63829 -14.32253 -14.04175 -13.87665 -13.53131 -13.36925 -13.23966 -13.06429 -13.01488 -12.75518 -12.69611 -12.56218 -12.20171 -12.02096 -11.94370 -11.92242 -11.85646 -11.45886 -11.33121 -11.22936 -11.05034 -10.83859 -10.61839 -10.59583 -10.20322 -10.02500 -9.96865 -9.68051 -9.60777 -9.56800 -9.46446 -8.77850 -8.75009 -8.40322 -8.14997 -6.62615 -5.79220 -3.27092 0.62546 1.24136 3.13099 3.36085 3.40315 3.44168 3.63181 4.01699 4.08848 4.21927 4.47520 4.51555 4.80391 5.02446 5.22953 5.33383 5.34324 5.39733 5.41340 5.46533 5.49749 5.53187 5.62102 5.64735 5.66121 5.82492 5.90032 5.91092 6.02156 6.03478 6.08195 6.11000 6.16611 6.30226 6.34106 6.39625 6.58184 6.61803 6.63293 6.66947 6.73818 6.77208 6.86947 7.01022 7.11760 7.23112 7.40356 7.45187 7.71726 7.83338 7.86114 8.32587 8.46824 8.84401 9.23688 9.86906 10.33454 11.26868 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.003999 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.277873 B = 7000.791184 C = 7498.639695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.095 3.905 3 N -0.448 5.448 4 C 0.128 3.872 5 C -0.101 4.101 6 C 0.037 3.963 7 C 0.567 3.433 8 O -0.550 6.550 9 N -0.663 5.663 10 C 0.127 3.873 11 C 0.174 3.826 12 H 0.044 0.956 13 C -0.136 4.136 14 C -0.101 4.101 15 C -0.106 4.106 16 C -0.144 4.144 17 C 0.182 3.818 18 N -0.582 5.582 19 C -0.253 4.253 20 H 0.060 0.940 21 C 0.018 3.982 22 N -0.896 5.896 23 Si 0.889 3.111 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.284 1.284 27 N -0.391 5.391 28 C 0.072 3.928 29 C -0.101 4.101 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.422 0.578 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.048 0.952 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.024 0.976 49 H 0.252 0.748 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 1.676 -7.783 9.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.048 4.048 3 N -0.163 5.163 4 C -0.012 4.012 5 C -0.158 4.158 6 C -0.105 4.105 7 C 0.350 3.650 8 O -0.430 6.430 9 N -0.311 5.311 10 C 0.003 3.997 11 C 0.064 3.936 12 H 0.062 0.938 13 C -0.177 4.177 14 C -0.138 4.138 15 C -0.144 4.144 16 C -0.183 4.183 17 C 0.058 3.942 18 N -0.304 5.304 19 C -0.383 4.383 20 H 0.078 0.922 21 C -0.182 4.182 22 N -0.540 5.540 23 Si 0.719 3.281 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.210 1.210 27 N -0.107 5.107 28 C -0.072 4.072 29 C -0.159 4.159 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.260 0.740 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.092 0.908 48 H 0.043 0.957 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.107 0.893 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.592 2.281 -7.776 9.314 hybrid contribution -0.395 -0.028 1.140 1.206 sum -4.987 2.253 -6.636 8.601 Atomic orbital electron populations 1.20750 0.87791 1.03854 1.03517 1.22344 0.98302 0.89130 0.95010 1.68233 1.07963 1.28856 1.11269 1.22294 0.89689 0.96746 0.92468 1.20997 1.00060 0.90511 1.04261 1.22107 0.96306 0.89863 1.02177 1.17509 0.84716 0.84603 0.78132 1.90663 1.68511 1.31150 1.52704 1.45600 1.07574 1.09403 1.68551 1.21571 0.79263 0.98603 1.00296 1.20508 0.91265 0.91065 0.90717 0.93769 1.21373 0.98592 0.96340 1.01378 1.20284 0.98684 0.96236 0.98604 1.20942 0.96054 0.97379 1.00000 1.22086 0.97345 0.99132 0.99713 1.20995 0.91522 0.81084 1.00618 1.43663 1.72363 1.02851 1.11554 1.18917 1.08851 1.06866 1.03627 0.92232 1.24977 0.95567 0.98377 0.99253 1.69985 1.15230 1.32186 1.36560 0.86588 0.77164 0.79767 0.84575 1.21115 1.21792 1.21023 1.68278 1.08251 1.28408 1.05787 1.22118 0.90266 0.96684 0.98128 1.20726 0.99180 0.92798 1.03162 0.89841 0.89915 0.90222 0.89931 0.91552 0.87341 0.73963 0.92920 0.91080 0.93323 0.91832 0.94120 0.93550 0.90795 0.94272 0.93327 0.93871 0.90830 0.95743 0.93801 0.90252 0.89261 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.37 36.01 0.34 -0.64 16 2 C 0.09 1.37 6.79 -82.28 -0.56 0.82 16 3 N -0.45 -7.37 10.34 -5.23 -0.05 -7.42 16 4 C 0.13 2.27 6.82 -82.03 -0.56 1.71 16 5 C -0.10 -1.57 8.88 36.00 0.32 -1.25 16 6 C 0.04 0.72 6.75 -82.84 -0.56 0.16 16 7 C 0.57 11.65 7.75 -12.19 -0.09 11.56 16 8 O -0.55 -11.56 13.33 5.35 0.07 -11.49 16 9 N -0.66 -13.64 4.71 -61.15 -0.29 -13.92 16 10 C 0.13 2.45 4.52 -4.04 -0.02 2.43 16 11 C 0.17 3.27 2.19 -67.97 -0.15 3.13 16 12 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 13 C -0.14 -2.27 5.06 -28.59 -0.14 -2.42 16 14 C -0.10 -1.57 5.16 -29.79 -0.15 -1.73 16 15 C -0.11 -1.80 5.51 -28.02 -0.15 -1.95 16 16 C -0.14 -2.56 5.71 -27.31 -0.16 -2.72 16 17 C 0.18 3.96 4.64 -2.94 -0.01 3.95 16 18 N -0.58 -12.70 1.77 -164.47 -0.29 -12.99 16 19 C -0.25 -6.23 7.56 -15.06 -0.11 -6.35 16 20 H 0.06 1.53 6.82 -52.49 -0.36 1.17 16 21 C 0.02 0.46 4.98 -17.43 -0.09 0.37 16 22 N -0.90 -23.67 10.97 55.49 0.61 -23.06 16 23 Si 0.89 21.57 29.57 -169.99 -5.03 16.55 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 N -0.39 -7.39 9.65 -5.88 -0.06 -7.45 16 28 C 0.07 1.12 6.79 -82.42 -0.56 0.56 16 29 C -0.10 -1.20 9.37 36.01 0.34 -0.86 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.60 6.70 -51.93 -0.35 0.25 16 32 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.11 1.88 5.84 -51.93 -0.30 1.58 16 36 H 0.42 9.32 7.44 -40.82 -0.30 9.01 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.49 6.89 -51.93 -0.36 1.14 16 39 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 43 H 0.07 1.44 7.48 -51.93 -0.39 1.05 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.04 0.73 7.31 -51.93 -0.38 0.35 16 47 H 0.07 1.82 6.48 -51.93 -0.34 1.48 16 48 H 0.02 0.58 7.99 -51.93 -0.42 0.16 16 49 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 52 H 0.08 0.71 6.70 -51.93 -0.35 0.36 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -28.16 400.55 -9.87 -38.03 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -8.54 Total: 8.94 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.33 Total: 6.78 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -0.08 Total: -64.84 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.16 -9.87 -38.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968944807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.417 kcal (2) G-P(sol) polarization free energy of solvation -28.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds