Wall clock time and date at job start Wed Apr 1 2020 04:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32133 * 119.90264 * 2 1 4 4 C 1.32091 * 120.07072 * 179.76660 * 3 2 1 5 5 C 1.50696 * 120.06326 * 180.28356 * 4 3 2 6 6 C 1.39444 * 119.86855 * 0.51170 * 4 3 2 7 7 C 1.48147 * 120.09259 * 179.76539 * 6 4 3 8 8 O 1.21518 * 120.00382 * 354.23281 * 7 6 4 9 9 N 1.34783 * 119.99997 * 174.22654 * 7 6 4 10 10 C 1.46497 * 120.00037 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46702 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.44537 * 64.94757 * 11 10 9 13 13 C 1.54865 * 109.44656 * 184.86519 * 11 10 9 14 14 C 1.47087 * 110.32201 * 191.29428 * 13 11 10 15 15 C 1.52568 * 114.33220 * 297.19252 * 14 13 11 16 16 C 1.50875 * 109.34921 * 85.02297 * 15 14 13 17 17 C 1.53945 * 110.09836 * 268.11816 * 16 15 14 18 18 N 1.44576 * 109.45046 * 304.99817 * 11 10 9 19 19 C 1.36940 * 118.64205 * 329.26571 * 18 11 10 20 20 H 1.07994 * 119.99913 * 329.37344 * 19 18 11 21 21 C 1.38810 * 119.99771 * 149.36759 * 19 18 11 22 22 N 1.31620 * 120.00307 * 349.77454 * 21 19 18 23 23 Si 1.86803 * 120.00048 * 169.76603 * 21 19 18 24 24 H 1.48496 * 109.46882 * 60.00209 * 23 21 19 25 25 H 1.48495 * 109.47576 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46789 * 300.00506 * 23 21 19 27 27 N 1.32998 * 119.80798 * 359.74547 * 6 4 3 28 28 C 1.31802 * 119.92861 * 0.02562 * 27 6 4 29 29 C 1.50703 * 119.93936 * 179.97438 * 28 27 6 30 30 H 1.08993 * 109.46872 * 269.72212 * 1 2 3 31 31 H 1.08999 * 109.47463 * 149.71735 * 1 2 3 32 32 H 1.09007 * 109.46778 * 29.71917 * 1 2 3 33 33 H 1.09005 * 109.46773 * 263.59528 * 5 4 3 34 34 H 1.08999 * 109.47644 * 23.59253 * 5 4 3 35 35 H 1.08997 * 109.47371 * 143.59658 * 5 4 3 36 36 H 0.97007 * 119.99511 * 359.97438 * 9 7 6 37 37 H 1.08994 * 109.46773 * 299.99780 * 10 9 7 38 38 H 1.08997 * 109.47504 * 60.00190 * 10 9 7 39 39 H 1.09003 * 109.33129 * 311.55426 * 13 11 10 40 40 H 1.08998 * 109.32891 * 71.03212 * 13 11 10 41 41 H 1.09005 * 108.51558 * 175.94114 * 14 13 11 42 42 H 1.08997 * 108.39197 * 58.35876 * 14 13 11 43 43 H 1.09003 * 109.48726 * 325.06331 * 15 14 13 44 44 H 1.08999 * 109.51581 * 205.00199 * 15 14 13 45 45 H 1.08998 * 109.36833 * 147.92594 * 16 15 14 46 46 H 1.09000 * 109.26845 * 28.24233 * 16 15 14 47 47 H 1.08998 * 108.94718 * 279.87462 * 17 16 15 48 48 H 1.09000 * 108.87944 * 161.19989 * 17 16 15 49 49 H 0.96999 * 120.00227 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.46692 * 270.02188 * 29 28 27 51 51 H 1.09001 * 109.46739 * 30.01822 * 29 28 27 52 52 H 1.08993 * 109.47426 * 150.01872 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1454 0.0000 4 6 3.4866 1.1493 0.0047 5 6 4.2377 2.4557 0.0111 6 6 4.1847 -0.0578 -0.0012 7 6 5.6661 -0.0592 -0.0013 8 8 6.2748 0.9877 -0.1020 9 7 6.3389 -1.2218 0.1105 10 6 7.8039 -1.2231 0.1110 11 6 8.3125 -2.6597 0.2483 12 1 8.0228 -3.2329 -0.6323 13 6 9.8561 -2.6505 0.3723 14 6 10.3877 -4.0151 0.2350 15 6 9.9275 -4.9813 1.3224 16 6 8.5898 -5.5646 0.9393 17 6 7.4522 -4.7096 1.5264 18 7 7.7347 -3.2642 1.4278 19 6 7.4370 -2.4626 2.4974 20 1 8.0270 -1.5790 2.6907 21 6 6.3768 -2.7858 3.3330 22 7 5.5362 -3.7392 2.9910 23 14 6.1429 -1.8679 4.9430 24 1 5.9526 -0.4216 4.6650 25 1 4.9478 -2.3987 5.6465 26 1 7.3431 -2.0539 5.7976 27 7 3.5166 -1.2078 -0.0064 28 6 2.1986 -1.2026 -0.0064 29 6 1.4413 -2.5056 -0.0128 30 1 -0.3633 -0.0050 1.0276 31 1 -0.3634 -0.8874 -0.5182 32 1 -0.3633 0.8926 -0.5095 33 1 4.5218 2.7165 -1.0085 34 1 3.6010 3.2390 0.4224 35 1 5.1337 2.3568 0.6238 36 1 5.8531 -2.0575 0.1913 37 1 8.1679 -0.7971 -0.8239 38 1 8.1676 -0.6270 0.9479 39 1 10.2772 -2.0190 -0.4101 40 1 10.1375 -2.2499 1.3461 41 1 11.4765 -3.9659 0.2540 42 1 10.0771 -4.4095 -0.7324 43 1 9.8340 -4.4469 2.2679 44 1 10.6572 -5.7839 1.4289 45 1 8.5146 -6.5809 1.3260 46 1 8.5037 -5.5839 -0.1471 47 1 7.3167 -4.9729 2.5754 48 1 6.5316 -4.9280 0.9853 49 1 4.7951 -3.9648 3.5748 50 1 1.2592 -2.8148 -1.0421 51 1 2.0281 -3.2693 0.4976 52 1 0.4892 -2.3750 0.5013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968944807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:23 Heat of formation + Delta-G solvation = 5.162104 kcal Electronic energy + Delta-G solvation = -32483.689442 eV Core-core repulsion = 28482.785169 eV Total energy + Delta-G solvation = -4000.904272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.52244 -40.56691 -39.52087 -36.39180 -35.79239 -35.31358 -35.18382 -33.22755 -32.46086 -31.16055 -30.00735 -28.68371 -27.59483 -26.72818 -25.19544 -24.61902 -23.87512 -22.79998 -21.68057 -21.07597 -20.77502 -19.37906 -18.73330 -17.72470 -17.26797 -16.92576 -16.67245 -16.23836 -16.15380 -15.97605 -15.58773 -15.26919 -15.19070 -14.73586 -14.48470 -14.36628 -14.22602 -13.89617 -13.82406 -13.73245 -13.62609 -13.39194 -13.32621 -13.16594 -13.09524 -12.88103 -12.85937 -12.81291 -12.72132 -12.54191 -12.41985 -12.03025 -11.84835 -11.55200 -11.38933 -11.31963 -11.20175 -11.11099 -10.91501 -10.36916 -10.10323 -10.07420 -9.68950 -8.48788 -7.78410 -5.24578 -0.67196 -0.03866 1.35842 1.39037 1.42188 1.67914 2.18796 2.49555 2.64717 2.92355 2.95680 3.28950 3.37494 3.60492 3.65499 3.85016 4.04435 4.07451 4.09243 4.18883 4.28467 4.43659 4.50669 4.61687 4.64143 4.66876 4.67488 4.69894 4.74783 4.75738 4.79728 4.84426 4.92324 5.02123 5.07674 5.08147 5.14396 5.21273 5.28072 5.28505 5.39594 5.43457 5.46628 5.56621 5.63791 5.68392 5.77233 5.80303 5.93100 6.13880 6.48876 6.52364 6.75520 7.21841 7.28445 8.01519 8.41045 9.24282 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.003999 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.277873 B = 7000.791184 C = 7498.639695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.105 3.895 3 N -0.457 5.457 4 C 0.118 3.882 5 C -0.093 4.093 6 C 0.001 3.999 7 C 0.562 3.438 8 O -0.563 6.563 9 N -0.669 5.669 10 C 0.130 3.870 11 C 0.173 3.827 12 H 0.053 0.947 13 C -0.127 4.127 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.133 4.133 17 C 0.193 3.807 18 N -0.587 5.587 19 C -0.235 4.235 20 H 0.047 0.953 21 C -0.021 4.021 22 N -0.910 5.910 23 Si 0.925 3.075 24 H -0.298 1.298 25 H -0.296 1.296 26 H -0.281 1.281 27 N -0.421 5.421 28 C 0.061 3.939 29 C -0.097 4.097 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.414 0.586 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.038 0.962 48 H -0.002 1.002 49 H 0.244 0.756 50 H 0.103 0.897 51 H 0.064 0.936 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 1.241 -9.283 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.039 4.039 3 N -0.172 5.172 4 C -0.021 4.021 5 C -0.150 4.150 6 C -0.138 4.138 7 C 0.346 3.654 8 O -0.444 6.444 9 N -0.316 5.316 10 C 0.006 3.994 11 C 0.065 3.935 12 H 0.071 0.929 13 C -0.167 4.167 14 C -0.138 4.138 15 C -0.140 4.140 16 C -0.172 4.172 17 C 0.068 3.932 18 N -0.309 5.309 19 C -0.366 4.366 20 H 0.065 0.935 21 C -0.218 4.218 22 N -0.556 5.556 23 Si 0.757 3.243 24 H -0.226 1.226 25 H -0.222 1.222 26 H -0.207 1.207 27 N -0.138 5.138 28 C -0.084 4.084 29 C -0.154 4.154 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.017 0.983 49 H 0.053 0.947 50 H 0.122 0.878 51 H 0.083 0.917 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.176 1.869 -9.286 10.794 hybrid contribution -0.295 0.112 1.572 1.603 sum -5.471 1.981 -7.714 9.662 Atomic orbital electron populations 1.20980 0.83755 1.05919 1.05070 1.23208 1.00693 0.88092 0.91881 1.68359 1.07171 1.29750 1.11963 1.22511 0.90498 0.96745 0.92304 1.20912 0.99333 0.90355 1.04445 1.21959 0.95670 0.90917 1.05280 1.17823 0.85659 0.84315 0.77597 1.90637 1.69175 1.31305 1.53313 1.45664 1.07937 1.09098 1.68935 1.21601 0.78853 0.98671 1.00296 1.20690 0.92705 0.90505 0.89605 0.92942 1.21275 0.96317 0.97882 1.01251 1.20273 1.00065 0.94859 0.98569 1.20901 0.96044 0.98150 0.98937 1.21950 0.96144 0.98778 1.00287 1.20744 0.92415 0.81635 0.98387 1.43716 1.72446 1.02847 1.11939 1.18872 1.07605 1.06125 1.03963 0.93541 1.25322 0.96175 0.99404 1.00930 1.70088 1.15538 1.33224 1.36742 0.86017 0.76866 0.78200 0.83263 1.22550 1.22181 1.20722 1.68224 1.10129 1.28628 1.06782 1.22863 0.89502 0.98878 0.97176 1.20861 0.99617 0.90087 1.04846 0.88175 0.86861 0.89201 0.89056 0.89715 0.89464 0.74968 0.90938 0.93360 0.90701 0.93792 0.91800 0.92139 0.93932 0.91806 0.92107 0.92389 0.94293 0.98340 0.94685 0.87827 0.91708 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 9.37 71.24 0.67 -0.87 16 2 C 0.10 2.86 6.79 42.63 0.29 3.15 16 3 N -0.46 -14.61 10.34 -170.47 -1.76 -16.37 16 4 C 0.12 4.24 6.82 42.81 0.29 4.54 16 5 C -0.09 -2.95 8.88 71.23 0.63 -2.31 16 6 C 0.00 0.05 6.75 41.89 0.28 0.33 16 7 C 0.56 24.06 7.75 86.87 0.67 24.73 16 8 O -0.56 -24.57 13.33 -3.77 -0.05 -24.62 16 9 N -0.67 -28.56 4.71 -465.68 -2.19 -30.75 16 10 C 0.13 5.08 4.52 86.38 0.39 5.47 16 11 C 0.17 6.46 2.19 45.99 0.10 6.56 16 12 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 13 C -0.13 -4.02 5.06 29.39 0.15 -3.87 16 14 C -0.10 -2.83 5.16 28.61 0.15 -2.68 16 15 C -0.10 -3.27 5.51 29.76 0.16 -3.11 16 16 C -0.13 -4.54 5.71 30.22 0.17 -4.37 16 17 C 0.19 8.55 4.64 86.49 0.40 8.95 16 18 N -0.59 -26.12 1.77 -674.25 -1.19 -27.31 16 19 C -0.23 -11.97 7.56 84.03 0.64 -11.33 16 20 H 0.05 2.49 6.82 -2.91 -0.02 2.47 16 21 C -0.02 -1.14 4.98 84.86 0.42 -0.72 16 22 N -0.91 -50.01 10.97 21.65 0.24 -49.77 16 23 Si 0.93 45.74 29.57 68.60 2.03 47.77 16 24 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 25 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 26 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 27 N -0.42 -16.31 9.65 -172.53 -1.66 -17.97 16 28 C 0.06 1.86 6.79 42.68 0.29 2.15 16 29 C -0.10 -2.11 9.37 71.24 0.67 -1.44 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 1.09 6.70 -2.39 -0.02 1.08 16 32 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 3.15 5.84 -2.39 -0.01 3.13 16 36 H 0.41 19.07 7.44 -92.70 -0.69 18.38 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.05 2.10 6.89 -2.39 -0.02 2.08 16 39 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.06 1.58 7.35 -2.39 -0.02 1.56 16 43 H 0.04 1.63 7.48 -2.39 -0.02 1.61 16 44 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.83 7.31 -2.39 -0.02 1.81 16 47 H 0.04 1.98 6.48 -2.39 -0.02 1.97 16 48 H 0.00 -0.07 7.99 -2.39 -0.02 -0.09 16 49 H 0.24 13.44 8.31 -92.71 -0.77 12.67 16 50 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.11 1.64 6.70 -2.39 -0.02 1.62 16 Total: -1.00 -64.94 400.55 2.02 -62.92 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.24 Total: 30.94 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 6.38 Total: 25.17 kcal Atomic # 7 Polarization: -135.60 SS G_CDS: -6.58 Total: -142.18 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.05 Total: -24.62 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -64.94 2.02 -62.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968944807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.081 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds