Wall clock time and date at job start Wed Apr 1 2020 04:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.77682 * 2 1 4 4 C 1.54426 * 110.72527 * 236.71115 * 2 1 3 5 5 N 1.47025 * 107.27751 * 263.84767 * 4 2 1 6 6 C 1.36941 * 125.64908 * 181.10064 * 5 4 2 7 7 H 1.08002 * 119.99854 * 359.97066 * 6 5 4 8 8 C 1.38809 * 120.00422 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99600 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00224 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46710 * 90.00167 * 10 8 6 12 12 H 1.48501 * 109.47211 * 209.99665 * 10 8 6 13 13 H 1.48499 * 109.47285 * 330.00177 * 10 8 6 14 14 C 1.47418 * 108.70541 * 1.05410 * 5 4 2 15 15 C 1.54909 * 104.83369 * 335.87982 * 14 5 4 16 16 H 1.08993 * 111.00610 * 155.11989 * 15 14 5 17 17 N 1.46506 * 111.00036 * 278.93353 * 15 14 5 18 18 C 1.34778 * 119.99856 * 265.96182 * 17 15 14 19 19 O 1.21633 * 120.00098 * 5.02014 * 18 17 15 20 20 C 1.47161 * 120.00236 * 185.02374 * 18 17 15 21 21 C 1.38404 * 126.88308 * 3.60012 * 20 18 17 22 22 C 1.39668 * 105.36049 * 179.91877 * 21 20 18 23 23 N 1.30863 * 107.86047 * 0.35627 * 22 21 20 24 24 N 1.28441 * 110.92904 * 359.76874 * 23 22 21 25 25 C 1.46495 * 125.19104 * 179.97438 * 24 23 22 26 26 C 1.53001 * 109.47330 * 275.57393 * 25 24 23 27 27 C 1.53783 * 113.61325 * 273.33913 * 26 25 24 28 28 C 1.53785 * 87.08267 * 220.02191 * 27 26 25 29 29 C 1.53780 * 87.08119 * 25.43224 * 28 27 26 30 30 H 1.08999 * 109.47153 * 296.75536 * 1 2 3 31 31 H 1.09003 * 109.47178 * 56.75970 * 1 2 3 32 32 H 1.08999 * 109.46999 * 176.76125 * 1 2 3 33 33 H 1.09005 * 109.47062 * 188.58023 * 3 2 1 34 34 H 1.08997 * 109.47336 * 308.57752 * 3 2 1 35 35 H 1.08999 * 109.47160 * 68.57822 * 3 2 1 36 36 H 1.08994 * 109.88365 * 144.42283 * 4 2 1 37 37 H 1.09001 * 110.00794 * 23.33308 * 4 2 1 38 38 H 0.97006 * 119.99824 * 179.97438 * 9 8 6 39 39 H 1.08998 * 110.37284 * 217.03821 * 14 5 4 40 40 H 1.09008 * 110.36228 * 94.71551 * 14 5 4 41 41 H 0.96999 * 120.00318 * 85.96129 * 17 15 14 42 42 H 1.08001 * 127.31544 * 0.04433 * 21 20 18 43 43 H 1.08003 * 126.07190 * 180.17111 * 22 21 20 44 44 H 1.09005 * 109.47193 * 35.57718 * 25 24 23 45 45 H 1.09000 * 109.46954 * 155.57143 * 25 24 23 46 46 H 1.08994 * 112.85164 * 44.64709 * 26 25 24 47 47 H 1.09000 * 113.61652 * 334.56844 * 27 26 25 48 48 H 1.08996 * 113.61477 * 105.46941 * 27 26 25 49 49 H 1.09003 * 113.60812 * 270.88752 * 28 27 26 50 50 H 1.08997 * 113.69108 * 139.99140 * 28 27 26 51 51 H 1.09001 * 113.61937 * 220.02077 * 29 28 27 52 52 H 1.08997 * 113.61381 * 89.11711 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0765 -0.7927 -1.2073 5 7 2.3717 -2.1545 -0.7381 6 6 2.8947 -3.1652 -1.4997 7 1 3.1255 -2.9930 -2.5407 8 6 3.1281 -4.4111 -0.9341 9 7 2.8472 -4.6209 0.3346 10 14 3.8408 -5.7901 -1.9732 11 1 5.3233 -5.7528 -1.8955 12 1 3.3513 -7.0967 -1.4650 13 1 3.4147 -5.6169 -3.3852 14 6 2.0126 -2.2512 0.6884 15 6 2.0789 -0.7954 1.2137 16 1 1.4400 -0.6658 2.0871 17 7 3.4595 -0.4082 1.5143 18 6 3.9399 -0.5432 2.7663 19 8 3.2591 -1.0705 3.6253 20 6 5.2880 -0.0526 3.0941 21 6 6.1521 0.6268 2.2530 22 6 7.2939 0.8753 3.0180 23 7 7.0984 0.3668 4.2078 24 7 5.9398 -0.1817 4.2876 25 6 5.4000 -0.8453 5.4769 26 6 5.8899 -2.2941 5.5192 27 6 5.0003 -3.2685 4.7294 28 6 5.2109 -4.2687 5.8784 29 6 5.4606 -3.0528 6.7862 30 1 -0.3633 0.4626 0.9176 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1517 1.4097 -0.1533 34 1 1.6025 1.9975 -0.8034 35 1 1.8507 1.9033 0.9567 36 1 2.9873 -0.3226 -1.5779 37 1 1.3288 -0.8278 -1.9998 38 1 3.0099 -5.4917 0.7299 39 1 2.7291 -2.8788 1.2183 40 1 1.0037 -2.6490 0.7994 41 1 4.0279 -0.0545 0.8123 42 1 5.9791 0.9071 1.2245 43 1 8.1819 1.3924 2.6855 44 1 5.7384 -0.3210 6.3706 45 1 4.3107 -0.8310 5.4379 46 1 6.9518 -2.3886 5.2925 47 1 3.9685 -2.9325 4.6267 48 1 5.4375 -3.5908 3.7843 49 1 6.0870 -4.9042 5.7489 50 1 4.3145 -4.8314 6.1391 51 1 6.2695 -3.2008 7.5016 52 1 4.5547 -2.6577 7.2458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974578596.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:50 Heat of formation + Delta-G solvation = 86.597316 kcal Electronic energy + Delta-G solvation = -32609.622698 eV Core-core repulsion = 28612.249721 eV Total energy + Delta-G solvation = -3997.372977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40389 -39.58074 -38.72021 -37.76289 -33.95668 -33.42544 -32.78163 -30.81836 -30.62802 -28.17423 -28.03829 -26.82417 -25.62591 -25.45087 -23.99636 -23.33157 -22.52364 -21.31438 -20.16226 -19.74711 -19.26696 -18.75994 -17.59480 -16.74813 -16.07075 -16.00565 -15.66522 -15.29429 -14.74863 -14.45214 -14.26148 -14.00228 -13.89478 -13.76088 -13.62669 -13.53134 -13.17901 -12.87870 -12.66862 -12.25875 -12.15624 -12.04067 -11.92529 -11.78586 -11.45238 -11.31345 -11.19296 -11.01740 -10.78732 -10.69702 -10.63597 -10.45130 -10.30357 -10.22721 -10.13933 -10.00688 -9.84093 -9.70391 -9.57570 -9.03485 -8.86742 -8.69838 -8.39248 -6.82478 -5.64482 -3.07111 1.48518 2.51802 2.74293 3.38977 3.44263 3.46217 3.51527 3.61799 4.47741 4.49052 4.69151 4.72148 4.80560 4.87646 4.96367 5.01902 5.21871 5.26247 5.28080 5.28384 5.42829 5.46860 5.51412 5.60152 5.70043 5.72463 5.77388 5.83458 5.87559 5.90056 5.98091 6.00561 6.02602 6.07992 6.15585 6.24620 6.27070 6.36638 6.40116 6.46984 6.56503 6.59847 6.62832 6.68679 6.75051 6.88098 6.95432 7.44917 7.61388 7.82495 7.92041 8.20252 8.37177 8.55172 9.20905 9.82479 10.46044 11.38074 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.004507 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.369306 B = 6211.087499 C = 7813.197750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.915 5.915 10 Si 0.910 3.090 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.147 3.853 15 C 0.125 3.875 16 H 0.090 0.910 17 N -0.682 5.682 18 C 0.589 3.411 19 O -0.542 6.542 20 C -0.023 4.023 21 C -0.196 4.196 22 C -0.008 4.008 23 N -0.286 5.286 24 N -0.251 5.251 25 C 0.122 3.878 26 C -0.127 4.127 27 C -0.133 4.133 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.114 0.886 40 H 0.021 0.979 41 H 0.400 0.600 42 H 0.157 0.843 43 H 0.182 0.818 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.066 0.934 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 11.224 8.177 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.188 4.188 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.021 3.979 15 C 0.020 3.980 16 H 0.108 0.892 17 N -0.331 5.331 18 C 0.374 3.626 19 O -0.420 6.420 20 C -0.152 4.152 21 C -0.225 4.225 22 C -0.183 4.183 23 N -0.118 5.118 24 N -0.038 5.038 25 C 0.003 3.997 26 C -0.146 4.146 27 C -0.170 4.170 28 C -0.179 4.179 29 C -0.164 4.164 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.132 0.868 40 H 0.039 0.961 41 H 0.235 0.765 42 H 0.175 0.825 43 H 0.199 0.801 44 H 0.110 0.890 45 H 0.142 0.858 46 H 0.109 0.891 47 H 0.124 0.876 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.200 10.414 9.964 14.764 hybrid contribution 0.460 -0.493 -1.880 1.997 sum 3.660 9.921 8.084 13.311 Atomic orbital electron populations 1.21684 0.93469 1.02502 1.00904 1.21875 0.96028 0.94610 0.96358 1.21721 1.00477 0.95358 1.01293 1.21445 0.96488 0.86793 0.93641 1.44454 1.74193 1.06692 1.07340 1.19012 1.34157 0.89232 0.92887 0.90605 1.24764 1.01671 0.97570 0.96345 1.69791 1.53560 1.22276 1.10726 0.86140 0.78736 0.81826 0.79178 1.21719 1.21703 1.20782 1.22315 1.00150 0.90261 0.85167 1.22599 0.80544 0.98367 0.96485 0.89218 1.45454 1.14633 1.64058 1.08980 1.16790 0.83698 0.78818 0.83262 1.90696 1.59514 1.44046 1.47794 1.21551 0.97045 1.07933 0.88654 1.22218 0.94478 1.05073 1.00707 1.23474 1.00278 1.04463 0.90108 1.73140 1.01881 1.13228 1.23558 1.45723 1.09466 1.38306 1.10315 1.22393 1.01329 0.92293 0.83733 1.22942 1.00583 0.92105 0.98959 1.23102 1.01550 0.95211 0.97173 1.22775 1.01776 0.96274 0.97068 1.22845 1.01376 0.96758 0.95449 0.93075 0.92667 0.91734 0.92870 0.92721 0.92840 0.96057 0.95822 0.93754 0.86799 0.96119 0.76477 0.82548 0.80059 0.89049 0.85815 0.89050 0.87639 0.91707 0.90614 0.91199 0.91483 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.41 37.16 0.31 -1.53 16 2 C -0.09 -1.38 0.80 -152.62 -0.12 -1.50 16 3 C -0.13 -1.65 8.01 37.16 0.30 -1.35 16 4 C 0.14 2.74 6.41 -3.01 -0.02 2.72 16 5 N -0.60 -14.45 3.39 -170.01 -0.58 -15.03 16 6 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 7 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 10 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 C 0.15 3.43 5.27 -2.53 -0.01 3.42 16 15 C 0.13 2.28 2.65 -65.78 -0.17 2.10 16 16 H 0.09 1.64 7.47 -51.93 -0.39 1.26 16 17 N -0.68 -11.51 4.52 -52.88 -0.24 -11.75 16 18 C 0.59 10.28 7.79 -12.64 -0.10 10.18 16 19 O -0.54 -10.35 12.05 5.25 0.06 -10.29 16 20 C -0.02 -0.36 6.96 -82.06 -0.57 -0.93 16 21 C -0.20 -2.67 10.50 -38.99 -0.41 -3.08 16 22 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 23 N -0.29 -4.25 11.90 30.59 0.36 -3.88 16 24 N -0.25 -3.81 3.35 -57.14 -0.19 -4.00 16 25 C 0.12 1.63 5.82 -4.04 -0.02 1.61 16 26 C -0.13 -1.68 3.97 -89.80 -0.36 -2.03 16 27 C -0.13 -2.09 7.35 -25.92 -0.19 -2.28 16 28 C -0.14 -1.81 8.08 -25.92 -0.21 -2.02 16 29 C -0.13 -1.39 7.64 -25.92 -0.20 -1.59 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.06 7.57 -51.93 -0.39 0.67 16 33 H 0.05 0.64 6.63 -51.93 -0.34 0.30 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.02 0.40 7.68 -51.93 -0.40 0.00 16 37 H 0.02 0.47 7.85 -51.93 -0.41 0.06 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.11 3.11 5.87 -51.93 -0.30 2.81 16 40 H 0.02 0.53 7.80 -51.92 -0.41 0.12 16 41 H 0.40 6.24 6.39 -40.82 -0.26 5.98 16 42 H 0.16 1.75 7.60 -52.49 -0.40 1.35 16 43 H 0.18 1.71 8.06 -52.48 -0.42 1.29 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.12 1.77 5.67 -51.93 -0.29 1.47 16 46 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.11 1.87 5.95 -51.93 -0.31 1.56 16 48 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.08 0.86 8.10 -51.93 -0.42 0.43 16 LS Contribution 403.83 15.07 6.09 6.09 Total: -1.00 -30.63 403.83 -9.72 -40.34 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -8.52 Total: 10.41 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.24 Total: -3.09 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.08 Total: -60.39 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.06 Total: -10.29 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.63 -9.72 -40.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974578596.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.939 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds