Wall clock time and date at job start Wed Apr 1 2020 04:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.77682 * 2 1 4 4 C 1.54426 * 110.72527 * 236.71115 * 2 1 3 5 5 N 1.47025 * 107.27751 * 263.84767 * 4 2 1 6 6 C 1.36941 * 125.64908 * 181.10064 * 5 4 2 7 7 H 1.08002 * 119.99854 * 359.97066 * 6 5 4 8 8 C 1.38809 * 120.00422 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99600 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00224 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46710 * 90.00167 * 10 8 6 12 12 H 1.48501 * 109.47211 * 209.99665 * 10 8 6 13 13 H 1.48499 * 109.47285 * 330.00177 * 10 8 6 14 14 C 1.47418 * 108.70541 * 1.05410 * 5 4 2 15 15 C 1.54909 * 104.83369 * 335.87982 * 14 5 4 16 16 H 1.08993 * 111.00610 * 155.11989 * 15 14 5 17 17 N 1.46506 * 111.00036 * 278.93353 * 15 14 5 18 18 C 1.34778 * 119.99856 * 265.96182 * 17 15 14 19 19 O 1.21633 * 120.00098 * 5.02014 * 18 17 15 20 20 C 1.47161 * 120.00236 * 185.02374 * 18 17 15 21 21 C 1.38404 * 126.88308 * 3.60012 * 20 18 17 22 22 C 1.39668 * 105.36049 * 179.91877 * 21 20 18 23 23 N 1.30863 * 107.86047 * 0.35627 * 22 21 20 24 24 N 1.28441 * 110.92904 * 359.76874 * 23 22 21 25 25 C 1.46495 * 125.19104 * 179.97438 * 24 23 22 26 26 C 1.53001 * 109.47330 * 275.57393 * 25 24 23 27 27 C 1.53783 * 113.61325 * 273.33913 * 26 25 24 28 28 C 1.53785 * 87.08267 * 220.02191 * 27 26 25 29 29 C 1.53780 * 87.08119 * 25.43224 * 28 27 26 30 30 H 1.08999 * 109.47153 * 296.75536 * 1 2 3 31 31 H 1.09003 * 109.47178 * 56.75970 * 1 2 3 32 32 H 1.08999 * 109.46999 * 176.76125 * 1 2 3 33 33 H 1.09005 * 109.47062 * 188.58023 * 3 2 1 34 34 H 1.08997 * 109.47336 * 308.57752 * 3 2 1 35 35 H 1.08999 * 109.47160 * 68.57822 * 3 2 1 36 36 H 1.08994 * 109.88365 * 144.42283 * 4 2 1 37 37 H 1.09001 * 110.00794 * 23.33308 * 4 2 1 38 38 H 0.97006 * 119.99824 * 179.97438 * 9 8 6 39 39 H 1.08998 * 110.37284 * 217.03821 * 14 5 4 40 40 H 1.09008 * 110.36228 * 94.71551 * 14 5 4 41 41 H 0.96999 * 120.00318 * 85.96129 * 17 15 14 42 42 H 1.08001 * 127.31544 * 0.04433 * 21 20 18 43 43 H 1.08003 * 126.07190 * 180.17111 * 22 21 20 44 44 H 1.09005 * 109.47193 * 35.57718 * 25 24 23 45 45 H 1.09000 * 109.46954 * 155.57143 * 25 24 23 46 46 H 1.08994 * 112.85164 * 44.64709 * 26 25 24 47 47 H 1.09000 * 113.61652 * 334.56844 * 27 26 25 48 48 H 1.08996 * 113.61477 * 105.46941 * 27 26 25 49 49 H 1.09003 * 113.60812 * 270.88752 * 28 27 26 50 50 H 1.08997 * 113.69108 * 139.99140 * 28 27 26 51 51 H 1.09001 * 113.61937 * 220.02077 * 29 28 27 52 52 H 1.08997 * 113.61381 * 89.11711 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0765 -0.7927 -1.2073 5 7 2.3717 -2.1545 -0.7381 6 6 2.8947 -3.1652 -1.4997 7 1 3.1255 -2.9930 -2.5407 8 6 3.1281 -4.4111 -0.9341 9 7 2.8472 -4.6209 0.3346 10 14 3.8408 -5.7901 -1.9732 11 1 5.3233 -5.7528 -1.8955 12 1 3.3513 -7.0967 -1.4650 13 1 3.4147 -5.6169 -3.3852 14 6 2.0126 -2.2512 0.6884 15 6 2.0789 -0.7954 1.2137 16 1 1.4400 -0.6658 2.0871 17 7 3.4595 -0.4082 1.5143 18 6 3.9399 -0.5432 2.7663 19 8 3.2591 -1.0705 3.6253 20 6 5.2880 -0.0526 3.0941 21 6 6.1521 0.6268 2.2530 22 6 7.2939 0.8753 3.0180 23 7 7.0984 0.3668 4.2078 24 7 5.9398 -0.1817 4.2876 25 6 5.4000 -0.8453 5.4769 26 6 5.8899 -2.2941 5.5192 27 6 5.0003 -3.2685 4.7294 28 6 5.2109 -4.2687 5.8784 29 6 5.4606 -3.0528 6.7862 30 1 -0.3633 0.4626 0.9176 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1517 1.4097 -0.1533 34 1 1.6025 1.9975 -0.8034 35 1 1.8507 1.9033 0.9567 36 1 2.9873 -0.3226 -1.5779 37 1 1.3288 -0.8278 -1.9998 38 1 3.0099 -5.4917 0.7299 39 1 2.7291 -2.8788 1.2183 40 1 1.0037 -2.6490 0.7994 41 1 4.0279 -0.0545 0.8123 42 1 5.9791 0.9071 1.2245 43 1 8.1819 1.3924 2.6855 44 1 5.7384 -0.3210 6.3706 45 1 4.3107 -0.8310 5.4379 46 1 6.9518 -2.3886 5.2925 47 1 3.9685 -2.9325 4.6267 48 1 5.4375 -3.5908 3.7843 49 1 6.0870 -4.9042 5.7489 50 1 4.3145 -4.8314 6.1391 51 1 6.2695 -3.2008 7.5016 52 1 4.5547 -2.6577 7.2458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974578596.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:49 Heat of formation + Delta-G solvation = 68.936767 kcal Electronic energy + Delta-G solvation = -32610.388517 eV Core-core repulsion = 28612.249721 eV Total energy + Delta-G solvation = -3998.138795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.51295 -41.03688 -39.82294 -39.22408 -35.69083 -34.80149 -33.98202 -32.58341 -31.94028 -29.67631 -29.19866 -28.01704 -27.38616 -26.55754 -25.47842 -24.54823 -23.84794 -22.59088 -21.77302 -21.07290 -20.38222 -20.07940 -18.86506 -18.68679 -17.40527 -17.21317 -17.05478 -16.58410 -16.32126 -15.76025 -15.72261 -15.49042 -15.24595 -15.12407 -14.81050 -14.62726 -14.57216 -14.17882 -13.86715 -13.70087 -13.64256 -13.32404 -13.11405 -13.01627 -12.97725 -12.85199 -12.60667 -12.54188 -12.50814 -12.11938 -11.81513 -11.77213 -11.76912 -11.71102 -11.46203 -11.43492 -11.34173 -11.27086 -10.95945 -10.74092 -10.24244 -9.95581 -9.87081 -8.81965 -7.74265 -5.18341 0.27806 1.40053 1.43795 1.44579 1.53305 1.69652 2.20433 2.32111 2.48691 3.35297 3.42157 3.56450 3.61096 3.63523 3.67969 3.73217 3.79285 3.91933 3.99078 4.10231 4.18805 4.21802 4.40419 4.41297 4.44164 4.53352 4.63167 4.74073 4.75890 4.83283 4.85091 4.86633 4.88372 4.91919 4.95847 5.01157 5.02553 5.07205 5.13513 5.22374 5.22762 5.30824 5.35952 5.49369 5.50939 5.55559 5.57891 5.70781 5.79435 5.85378 6.33629 6.52125 7.08811 7.11546 7.20606 7.81426 8.44437 9.25487 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.004507 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.369306 B = 6211.087499 C = 7813.197750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.230 4.230 7 H 0.083 0.917 8 C -0.066 4.066 9 N -0.943 5.943 10 Si 0.971 3.029 11 H -0.290 1.290 12 H -0.299 1.299 13 H -0.267 1.267 14 C 0.156 3.844 15 C 0.140 3.860 16 H 0.087 0.913 17 N -0.677 5.677 18 C 0.586 3.414 19 O -0.566 6.566 20 C -0.052 4.052 21 C -0.186 4.186 22 C -0.004 4.004 23 N -0.298 5.298 24 N -0.259 5.259 25 C 0.121 3.879 26 C -0.117 4.117 27 C -0.144 4.144 28 C -0.139 4.139 29 C -0.106 4.106 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.241 0.759 39 H 0.070 0.930 40 H -0.013 1.013 41 H 0.408 0.592 42 H 0.181 0.819 43 H 0.220 0.780 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.025 0.975 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.093 0.907 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.512 13.918 7.961 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.359 4.359 7 H 0.101 0.899 8 C -0.258 4.258 9 N -0.593 5.593 10 Si 0.800 3.200 11 H -0.217 1.217 12 H -0.226 1.226 13 H -0.192 1.192 14 C 0.029 3.971 15 C 0.034 3.966 16 H 0.105 0.895 17 N -0.327 5.327 18 C 0.372 3.628 19 O -0.446 6.446 20 C -0.181 4.181 21 C -0.215 4.215 22 C -0.179 4.179 23 N -0.130 5.130 24 N -0.046 5.046 25 C 0.001 3.999 26 C -0.136 4.136 27 C -0.182 4.182 28 C -0.177 4.177 29 C -0.144 4.144 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.005 0.995 41 H 0.244 0.756 42 H 0.199 0.801 43 H 0.236 0.764 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.044 0.956 49 H 0.101 0.899 50 H 0.089 0.911 51 H 0.112 0.888 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.498 13.152 9.719 16.961 hybrid contribution 0.053 -1.328 -1.880 2.302 sum 4.550 11.825 7.838 14.899 Atomic orbital electron populations 1.21688 0.92371 1.01261 1.03032 1.21852 0.96844 0.95953 0.92778 1.21688 1.00976 0.92629 1.02857 1.21682 0.97154 0.84794 0.95111 1.44671 1.73893 1.08219 1.07534 1.19396 1.33052 0.90050 0.93433 0.89943 1.25541 1.02956 0.99962 0.97377 1.70097 1.55122 1.21854 1.12242 0.85181 0.77721 0.78695 0.78388 1.21709 1.22630 1.19215 1.21945 0.96788 0.93133 0.85199 1.22250 0.81621 0.95449 0.97300 0.89506 1.45320 1.14196 1.63945 1.09189 1.17120 0.84390 0.78230 0.83082 1.90687 1.60423 1.44971 1.48527 1.21495 0.96798 1.09799 0.89977 1.22613 0.93933 1.03490 1.01503 1.24132 1.01085 1.03551 0.89174 1.73138 1.01670 1.13533 1.24687 1.45872 1.09631 1.38677 1.10443 1.22437 1.00640 0.92425 0.84360 1.22858 0.99421 0.91871 0.99488 1.23018 1.00409 0.98078 0.96659 1.22804 1.02168 0.96688 0.96012 1.22785 1.02642 0.94358 0.94638 0.91198 0.90234 0.94732 0.92150 0.90423 0.91770 0.94679 0.95707 0.94942 0.91169 0.99550 0.75566 0.80144 0.76400 0.86529 0.87183 0.89573 0.90205 0.95635 0.89886 0.91084 0.88848 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.41 71.98 0.61 -2.84 16 2 C -0.07 -2.20 0.80 -50.96 -0.04 -2.24 16 3 C -0.12 -2.68 8.01 71.98 0.58 -2.10 16 4 C 0.14 5.15 6.41 86.76 0.56 5.70 16 5 N -0.62 -30.44 3.39 -691.79 -2.35 -32.79 16 6 C -0.23 -12.63 10.27 84.03 0.86 -11.77 16 7 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 8 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 9 N -0.94 -57.47 10.09 21.65 0.22 -57.25 16 10 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 14 C 0.16 7.71 5.27 86.86 0.46 8.17 16 15 C 0.14 5.18 2.65 46.38 0.12 5.30 16 16 H 0.09 3.28 7.47 -2.39 -0.02 3.26 16 17 N -0.68 -22.95 4.52 -439.47 -1.98 -24.93 16 18 C 0.59 20.98 7.79 86.59 0.67 21.65 16 19 O -0.57 -22.87 12.05 -4.13 -0.05 -22.92 16 20 C -0.05 -1.64 6.96 40.79 0.28 -1.36 16 21 C -0.19 -4.70 10.50 22.65 0.24 -4.47 16 22 C 0.00 -0.10 12.03 85.18 1.02 0.93 16 23 N -0.30 -8.34 11.90 -57.14 -0.68 -9.02 16 24 N -0.26 -7.72 3.35 -334.69 -1.12 -8.84 16 25 C 0.12 3.21 5.82 86.38 0.50 3.71 16 26 C -0.12 -3.12 3.97 -10.26 -0.04 -3.16 16 27 C -0.14 -4.88 7.35 31.12 0.23 -4.65 16 28 C -0.14 -3.63 8.08 31.12 0.25 -3.38 16 29 C -0.11 -2.21 7.64 31.12 0.24 -1.97 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 33 H 0.06 1.23 6.63 -2.38 -0.02 1.22 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 1.24 7.68 -2.39 -0.02 1.22 16 37 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 38 H 0.24 14.56 8.31 -92.70 -0.77 13.79 16 39 H 0.07 4.14 5.87 -2.39 -0.01 4.12 16 40 H -0.01 -0.73 7.80 -2.38 -0.02 -0.75 16 41 H 0.41 12.31 6.39 -92.71 -0.59 11.72 16 42 H 0.18 3.50 7.60 -2.91 -0.02 3.48 16 43 H 0.22 3.23 8.06 -2.91 -0.02 3.20 16 44 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.11 3.25 5.67 -2.39 -0.01 3.24 16 46 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.08 3.11 5.95 -2.39 -0.01 3.10 16 48 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.10 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -71.80 403.83 3.40 -68.41 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.33 Total: 34.69 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 7.01 Total: 4.25 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -5.91 Total: -132.84 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -71.80 3.40 -68.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974578596.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.343 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds