Wall clock time and date at job start Wed Apr 1 2020 04:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 110.77848 * 2 1 4 4 C 1.54329 * 110.71940 * 236.75852 * 2 1 3 5 5 N 1.47022 * 107.27091 * 219.44125 * 4 2 1 6 6 C 1.36933 * 125.64708 * 178.89614 * 5 4 2 7 7 H 1.08002 * 119.99941 * 0.02562 * 6 5 4 8 8 C 1.38806 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.31624 * 120.00054 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00177 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47108 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46937 * 119.99675 * 10 8 6 13 13 H 1.48496 * 109.47252 * 239.99674 * 10 8 6 14 14 C 1.47427 * 108.70333 * 358.94517 * 5 4 2 15 15 C 1.54911 * 104.83226 * 24.12694 * 14 5 4 16 16 H 1.09007 * 111.03752 * 204.90587 * 15 14 5 17 17 N 1.46495 * 111.00828 * 81.06609 * 15 14 5 18 18 C 1.34773 * 119.99891 * 92.80092 * 17 15 14 19 19 O 1.21284 * 120.00243 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99941 * 180.02562 * 18 17 15 21 21 C 1.50702 * 109.47238 * 179.97438 * 20 18 17 22 22 N 1.31069 * 125.95828 * 269.95802 * 21 20 18 23 23 N 1.40303 * 108.26412 * 180.02562 * 22 21 20 24 24 H 0.97001 * 126.08910 * 179.97438 * 23 22 21 25 25 C 1.34319 * 107.81870 * 359.94771 * 23 22 21 26 26 C 1.35747 * 107.84563 * 0.08208 * 25 23 22 27 27 C 1.50841 * 124.11303 * 179.81276 * 26 25 23 28 28 C 1.53369 * 108.37533 * 343.44734 * 27 26 25 29 29 C 1.53117 * 109.50724 * 49.95508 * 28 27 26 30 30 C 1.50826 * 128.03151 * 180.10409 * 25 23 22 31 31 H 1.08997 * 109.47153 * 296.76279 * 1 2 3 32 32 H 1.09002 * 109.47397 * 56.76704 * 1 2 3 33 33 H 1.09001 * 109.47040 * 176.76278 * 1 2 3 34 34 H 1.09000 * 109.47202 * 183.24279 * 3 2 1 35 35 H 1.09003 * 109.46952 * 303.23531 * 3 2 1 36 36 H 1.08995 * 109.47385 * 63.23930 * 3 2 1 37 37 H 1.08997 * 109.88056 * 338.86412 * 4 2 1 38 38 H 1.08998 * 109.87670 * 100.02602 * 4 2 1 39 39 H 0.97003 * 120.00157 * 180.02562 * 9 8 6 40 40 H 1.09003 * 110.36556 * 265.28968 * 14 5 4 41 41 H 1.08998 * 110.37041 * 142.96428 * 14 5 4 42 42 H 0.97004 * 119.99876 * 272.80601 * 17 15 14 43 43 H 1.09003 * 109.47271 * 60.00371 * 20 18 17 44 44 H 1.09003 * 109.47288 * 300.00443 * 20 18 17 45 45 H 1.08994 * 109.68346 * 103.16925 * 27 26 25 46 46 H 1.08999 * 109.68461 * 223.73023 * 27 26 25 47 47 H 1.09001 * 109.46252 * 169.95964 * 28 27 26 48 48 H 1.08996 * 109.46872 * 289.95074 * 28 27 26 49 49 H 1.09000 * 109.46080 * 169.70815 * 29 28 27 50 50 H 1.09004 * 109.46378 * 49.72892 * 29 28 27 51 51 H 1.09004 * 109.68581 * 283.17388 * 30 25 23 52 52 H 1.09001 * 109.68513 * 43.73132 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0760 -0.7913 -1.2073 5 7 3.2445 -1.5507 -0.7390 6 6 4.0034 -2.3981 -1.5014 7 1 3.7597 -2.5525 -2.5422 8 6 5.0856 -3.0587 -0.9365 9 7 5.3828 -2.8701 0.3318 10 14 6.1204 -4.2153 -1.9762 11 1 5.5815 -4.2534 -3.3595 12 1 7.5246 -3.7329 -2.0047 13 1 6.0774 -5.5794 -1.3910 14 6 3.4633 -1.2498 0.6875 15 6 2.0789 -0.7955 1.2138 16 1 2.1843 -0.1519 2.0873 17 7 1.2271 -1.9487 1.5145 18 6 1.2025 -2.4617 2.7606 19 8 1.8853 -1.9682 3.6331 20 6 0.3267 -3.6484 3.0698 21 6 0.4820 -4.0228 4.5212 22 7 1.3570 -4.8683 5.0086 23 7 1.1746 -4.9379 6.3979 24 1 1.6848 -5.4862 7.0144 25 6 0.1682 -4.1097 6.7224 26 6 -0.2795 -3.5311 5.5789 27 6 -1.4116 -2.5360 5.5213 28 6 -2.1982 -2.6221 6.8351 29 6 -1.2288 -2.5423 8.0176 30 6 -0.4027 -3.8324 8.0906 31 1 -0.3633 0.4627 0.9175 32 1 -0.3634 0.5632 -0.8596 33 1 -0.3633 -1.0260 -0.0580 34 1 3.1610 1.4062 -0.0581 35 1 1.6750 1.9700 -0.8596 36 1 1.7691 1.9343 0.9175 37 1 1.3129 -1.4758 -1.5775 38 1 2.3740 -0.1024 -1.9977 39 1 6.1393 -3.3315 0.7265 40 1 4.1931 -0.4478 0.7985 41 1 3.7960 -2.1426 1.2170 42 1 0.6808 -2.3432 0.8167 43 1 0.6219 -4.4907 2.4441 44 1 -0.7141 -3.3940 2.8691 45 1 -1.0103 -1.5300 5.3989 46 1 -2.0678 -2.7744 4.6843 47 1 -2.9062 -1.7950 6.8894 48 1 -2.7400 -3.5671 6.8729 49 1 -1.7931 -2.4194 8.9421 50 1 -0.5616 -1.6909 7.8835 51 1 -1.0418 -4.6607 8.3965 52 1 0.4080 -3.7089 8.8086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974581713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:23 Heat of formation + Delta-G solvation = 45.471178 kcal Electronic energy + Delta-G solvation = -31704.346875 eV Core-core repulsion = 27705.190535 eV Total energy + Delta-G solvation = -3999.156340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51680 -39.53239 -37.78450 -36.58161 -33.74481 -33.38644 -32.89688 -30.65422 -30.26401 -29.38245 -28.64615 -27.63553 -26.53165 -25.54747 -23.63407 -23.34110 -22.17796 -21.10484 -19.95374 -19.41888 -18.76216 -18.47575 -17.50820 -16.77510 -16.52917 -15.74324 -15.41841 -14.79505 -14.51493 -14.19322 -14.04689 -13.97988 -13.79531 -13.73951 -13.47509 -13.42054 -13.13147 -13.09780 -12.69617 -12.57584 -12.19428 -12.04861 -11.87679 -11.75625 -11.62780 -11.22536 -11.11925 -11.08947 -11.00942 -10.91965 -10.74564 -10.71748 -10.34714 -10.31523 -10.12815 -9.88946 -9.73896 -9.63658 -9.49156 -9.03061 -8.62417 -8.23575 -8.18362 -6.75324 -5.57411 -3.00664 1.95245 2.76226 2.88776 3.23192 3.43415 3.48130 3.51514 3.88491 4.42551 4.53369 4.58815 4.67161 4.71599 5.05222 5.06165 5.12223 5.18697 5.27363 5.31277 5.34876 5.38851 5.43206 5.51652 5.57789 5.58148 5.63939 5.69058 5.80785 5.85971 5.87348 5.89923 5.93729 6.08748 6.10975 6.15745 6.18248 6.24578 6.31325 6.32746 6.48000 6.53873 6.67052 6.74672 6.76288 6.84324 7.08477 7.38148 7.56908 7.68375 7.82310 7.95021 8.14854 8.45518 8.85077 9.27498 9.89355 10.53530 11.44918 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003155 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.946718 B = 8873.013516 C =10530.061779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.224 4.224 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.915 5.915 10 Si 0.911 3.089 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.146 3.854 15 C 0.126 3.874 16 H 0.086 0.914 17 N -0.702 5.702 18 C 0.521 3.479 19 O -0.535 6.535 20 C -0.064 4.064 21 C 0.112 3.888 22 N -0.278 5.278 23 N -0.470 5.470 24 H 0.435 0.565 25 C 0.079 3.921 26 C -0.222 4.222 27 C -0.041 4.041 28 C -0.118 4.118 29 C -0.114 4.114 30 C -0.054 4.054 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.251 0.749 40 H 0.018 0.982 41 H 0.112 0.888 42 H 0.396 0.604 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.081 0.919 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.222 1.395 12.722 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.563 5.563 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.020 3.980 15 C 0.021 3.979 16 H 0.104 0.896 17 N -0.353 5.353 18 C 0.305 3.695 19 O -0.412 6.412 20 C -0.106 4.106 21 C -0.055 4.055 22 N -0.100 5.100 23 N -0.177 5.177 24 H 0.279 0.721 25 C -0.051 4.051 26 C -0.233 4.233 27 C -0.079 4.079 28 C -0.155 4.155 29 C -0.152 4.152 30 C -0.093 4.093 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.130 0.870 42 H 0.230 0.770 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.571 0.821 13.075 21.124 hybrid contribution 0.248 -0.631 -0.463 0.821 sum -16.323 0.189 12.613 20.629 Atomic orbital electron populations 1.21700 0.94613 1.01236 1.01130 1.21846 0.94845 0.95660 0.96548 1.21682 1.01884 0.94234 1.00778 1.21408 0.90283 0.92943 0.93659 1.44467 1.30666 1.50175 1.07393 1.19054 1.06408 1.16937 0.92866 0.90571 1.24794 0.98803 1.00604 0.96315 1.69826 1.29813 1.45909 1.10783 0.86057 0.80163 0.80564 0.79040 1.20609 1.21850 1.21827 1.22306 0.89362 1.01284 0.85053 1.22473 0.93160 0.86211 0.96103 0.89582 1.45719 1.46036 1.33121 1.10407 1.20072 0.82671 0.84152 0.82621 1.90700 1.42885 1.61098 1.46505 1.19997 1.01267 0.98429 0.90918 1.21191 0.93748 0.95397 0.95165 1.77542 1.21912 1.23265 0.87320 1.45895 1.28462 1.36342 1.07022 0.72134 1.20815 0.92106 0.95152 0.96979 1.19633 1.05184 1.07322 0.91175 1.19973 0.93501 0.97175 0.97277 1.21591 0.97564 1.01970 0.94394 1.21546 0.98065 0.96893 0.98701 1.20321 0.99265 0.99123 0.90635 0.92880 0.92901 0.92841 0.91829 0.92792 0.93125 0.96078 0.95986 0.93785 0.96387 0.87005 0.76957 0.87433 0.87493 0.91145 0.91328 0.91524 0.91865 0.91186 0.91179 0.90041 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.07 37.16 0.30 -1.37 16 2 C -0.09 -1.46 0.80 -152.67 -0.12 -1.58 16 3 C -0.13 -1.97 8.41 37.16 0.31 -1.65 16 4 C 0.14 2.87 6.41 -3.06 -0.02 2.85 16 5 N -0.60 -15.11 3.39 -170.07 -0.58 -15.69 16 6 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.68 10.09 55.49 0.56 -27.12 16 10 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 C 0.15 3.64 5.27 -2.53 -0.01 3.63 16 15 C 0.13 2.46 2.67 -65.78 -0.18 2.29 16 16 H 0.09 1.75 7.44 -51.92 -0.39 1.36 16 17 N -0.70 -12.32 4.54 -51.73 -0.24 -12.55 16 18 C 0.52 9.57 7.82 -10.99 -0.09 9.48 16 19 O -0.54 -12.09 15.67 5.55 0.09 -12.01 16 20 C -0.06 -0.94 6.13 -29.03 -0.18 -1.12 16 21 C 0.11 1.80 5.71 -82.52 -0.47 1.33 16 22 N -0.28 -4.84 12.71 33.59 0.43 -4.42 16 23 N -0.47 -6.31 7.34 33.48 0.25 -6.06 16 24 H 0.44 4.35 8.96 -182.44 -1.64 2.71 16 25 C 0.08 0.97 7.08 -82.33 -0.58 0.38 16 26 C -0.22 -3.04 5.91 -105.05 -0.62 -3.66 16 27 C -0.04 -0.44 6.06 -27.62 -0.17 -0.61 16 28 C -0.12 -0.94 5.90 -26.48 -0.16 -1.10 16 29 C -0.11 -0.87 5.90 -26.48 -0.16 -1.03 16 30 C -0.05 -0.44 6.30 -27.63 -0.17 -0.61 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.65 6.48 -51.93 -0.34 0.32 16 34 H 0.06 1.11 7.57 -51.93 -0.39 0.72 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.41 7.76 -51.93 -0.40 0.01 16 38 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 39 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.02 0.49 7.80 -51.93 -0.41 0.09 16 41 H 0.11 3.29 5.87 -51.93 -0.30 2.98 16 42 H 0.40 6.13 7.18 -40.82 -0.29 5.83 16 43 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.11 1.14 7.87 -51.93 -0.41 0.73 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.64 7.94 -51.93 -0.41 0.23 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 52 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 405.35 15.07 6.11 6.11 Total: -1.00 -36.07 405.35 -10.97 -47.05 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -10.00 Total: 6.67 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.56 Total: 0.47 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: 0.42 Total: -65.84 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.07 -10.97 -47.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974581713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.517 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds