Wall clock time and date at job start Wed Apr 1 2020 04:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 110.77848 * 2 1 4 4 C 1.54329 * 110.71940 * 236.75852 * 2 1 3 5 5 N 1.47022 * 107.27091 * 219.44125 * 4 2 1 6 6 C 1.36933 * 125.64708 * 178.89614 * 5 4 2 7 7 H 1.08002 * 119.99941 * 0.02562 * 6 5 4 8 8 C 1.38806 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.31624 * 120.00054 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00177 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47108 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46937 * 119.99675 * 10 8 6 13 13 H 1.48496 * 109.47252 * 239.99674 * 10 8 6 14 14 C 1.47427 * 108.70333 * 358.94517 * 5 4 2 15 15 C 1.54911 * 104.83226 * 24.12694 * 14 5 4 16 16 H 1.09007 * 111.03752 * 204.90587 * 15 14 5 17 17 N 1.46495 * 111.00828 * 81.06609 * 15 14 5 18 18 C 1.34773 * 119.99891 * 92.80092 * 17 15 14 19 19 O 1.21284 * 120.00243 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99941 * 180.02562 * 18 17 15 21 21 C 1.50702 * 109.47238 * 179.97438 * 20 18 17 22 22 N 1.31069 * 125.95828 * 269.95802 * 21 20 18 23 23 N 1.40303 * 108.26412 * 180.02562 * 22 21 20 24 24 H 0.97001 * 126.08910 * 179.97438 * 23 22 21 25 25 C 1.34319 * 107.81870 * 359.94771 * 23 22 21 26 26 C 1.35747 * 107.84563 * 0.08208 * 25 23 22 27 27 C 1.50841 * 124.11303 * 179.81276 * 26 25 23 28 28 C 1.53369 * 108.37533 * 343.44734 * 27 26 25 29 29 C 1.53117 * 109.50724 * 49.95508 * 28 27 26 30 30 C 1.50826 * 128.03151 * 180.10409 * 25 23 22 31 31 H 1.08997 * 109.47153 * 296.76279 * 1 2 3 32 32 H 1.09002 * 109.47397 * 56.76704 * 1 2 3 33 33 H 1.09001 * 109.47040 * 176.76278 * 1 2 3 34 34 H 1.09000 * 109.47202 * 183.24279 * 3 2 1 35 35 H 1.09003 * 109.46952 * 303.23531 * 3 2 1 36 36 H 1.08995 * 109.47385 * 63.23930 * 3 2 1 37 37 H 1.08997 * 109.88056 * 338.86412 * 4 2 1 38 38 H 1.08998 * 109.87670 * 100.02602 * 4 2 1 39 39 H 0.97003 * 120.00157 * 180.02562 * 9 8 6 40 40 H 1.09003 * 110.36556 * 265.28968 * 14 5 4 41 41 H 1.08998 * 110.37041 * 142.96428 * 14 5 4 42 42 H 0.97004 * 119.99876 * 272.80601 * 17 15 14 43 43 H 1.09003 * 109.47271 * 60.00371 * 20 18 17 44 44 H 1.09003 * 109.47288 * 300.00443 * 20 18 17 45 45 H 1.08994 * 109.68346 * 103.16925 * 27 26 25 46 46 H 1.08999 * 109.68461 * 223.73023 * 27 26 25 47 47 H 1.09001 * 109.46252 * 169.95964 * 28 27 26 48 48 H 1.08996 * 109.46872 * 289.95074 * 28 27 26 49 49 H 1.09000 * 109.46080 * 169.70815 * 29 28 27 50 50 H 1.09004 * 109.46378 * 49.72892 * 29 28 27 51 51 H 1.09004 * 109.68581 * 283.17388 * 30 25 23 52 52 H 1.09001 * 109.68513 * 43.73132 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0760 -0.7913 -1.2073 5 7 3.2445 -1.5507 -0.7390 6 6 4.0034 -2.3981 -1.5014 7 1 3.7597 -2.5525 -2.5422 8 6 5.0856 -3.0587 -0.9365 9 7 5.3828 -2.8701 0.3318 10 14 6.1204 -4.2153 -1.9762 11 1 5.5815 -4.2534 -3.3595 12 1 7.5246 -3.7329 -2.0047 13 1 6.0774 -5.5794 -1.3910 14 6 3.4633 -1.2498 0.6875 15 6 2.0789 -0.7955 1.2138 16 1 2.1843 -0.1519 2.0873 17 7 1.2271 -1.9487 1.5145 18 6 1.2025 -2.4617 2.7606 19 8 1.8853 -1.9682 3.6331 20 6 0.3267 -3.6484 3.0698 21 6 0.4820 -4.0228 4.5212 22 7 1.3570 -4.8683 5.0086 23 7 1.1746 -4.9379 6.3979 24 1 1.6848 -5.4862 7.0144 25 6 0.1682 -4.1097 6.7224 26 6 -0.2795 -3.5311 5.5789 27 6 -1.4116 -2.5360 5.5213 28 6 -2.1982 -2.6221 6.8351 29 6 -1.2288 -2.5423 8.0176 30 6 -0.4027 -3.8324 8.0906 31 1 -0.3633 0.4627 0.9175 32 1 -0.3634 0.5632 -0.8596 33 1 -0.3633 -1.0260 -0.0580 34 1 3.1610 1.4062 -0.0581 35 1 1.6750 1.9700 -0.8596 36 1 1.7691 1.9343 0.9175 37 1 1.3129 -1.4758 -1.5775 38 1 2.3740 -0.1024 -1.9977 39 1 6.1393 -3.3315 0.7265 40 1 4.1931 -0.4478 0.7985 41 1 3.7960 -2.1426 1.2170 42 1 0.6808 -2.3432 0.8167 43 1 0.6219 -4.4907 2.4441 44 1 -0.7141 -3.3940 2.8691 45 1 -1.0103 -1.5300 5.3989 46 1 -2.0678 -2.7744 4.6843 47 1 -2.9062 -1.7950 6.8894 48 1 -2.7400 -3.5671 6.8729 49 1 -1.7931 -2.4194 8.9421 50 1 -0.5616 -1.6909 7.8835 51 1 -1.0418 -4.6607 8.3965 52 1 0.4080 -3.7089 8.8086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974581713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:21 Heat of formation + Delta-G solvation = 20.802886 kcal Electronic energy + Delta-G solvation = -31705.416572 eV Core-core repulsion = 27705.190535 eV Total energy + Delta-G solvation = -4000.226037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53741 -41.07930 -39.35638 -37.32726 -35.64436 -34.55557 -34.34713 -32.58936 -31.21565 -30.34808 -29.94323 -28.99329 -27.87835 -27.33689 -25.06422 -24.39781 -23.01402 -22.64033 -21.61147 -20.76616 -19.90404 -19.61548 -18.69529 -18.46535 -18.05042 -17.37218 -16.59969 -16.24932 -16.06160 -15.63480 -15.38907 -15.16283 -14.86800 -14.80075 -14.62718 -14.51687 -14.41940 -14.09656 -13.93966 -13.75837 -13.64402 -13.62358 -13.04128 -13.00322 -12.91667 -12.81464 -12.76614 -12.60073 -12.53807 -12.04705 -11.77745 -11.73813 -11.72932 -11.65543 -11.41812 -11.40131 -11.33404 -11.31436 -10.95340 -10.76620 -10.23559 -9.88103 -9.17777 -8.83716 -7.75290 -5.20413 0.91874 1.43141 1.44269 1.54713 1.64025 1.77683 1.93628 2.48331 2.51563 3.34571 3.55773 3.61915 3.71038 3.71918 3.91762 4.00876 4.04493 4.07861 4.12366 4.21955 4.36135 4.39618 4.46219 4.54215 4.55341 4.66697 4.69940 4.78443 4.82851 4.85238 4.87146 4.92655 4.96444 5.07452 5.08074 5.12548 5.14975 5.24260 5.25387 5.34184 5.34950 5.37416 5.46218 5.50024 5.54231 5.57726 5.73674 5.75495 5.85362 6.31635 6.48390 6.70437 6.74791 7.09315 7.40652 7.80218 8.43840 9.24993 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003155 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.946718 B = 8873.013516 C =10530.061779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.228 4.228 7 H 0.086 0.914 8 C -0.072 4.072 9 N -0.950 5.950 10 Si 0.976 3.024 11 H -0.260 1.260 12 H -0.297 1.297 13 H -0.297 1.297 14 C 0.154 3.846 15 C 0.139 3.861 16 H 0.076 0.924 17 N -0.692 5.692 18 C 0.518 3.482 19 O -0.584 6.584 20 C -0.056 4.056 21 C 0.090 3.910 22 N -0.337 5.337 23 N -0.468 5.468 24 H 0.446 0.554 25 C 0.085 3.915 26 C -0.243 4.243 27 C -0.041 4.041 28 C -0.113 4.113 29 C -0.114 4.114 30 C -0.052 4.052 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.025 0.975 39 H 0.240 0.760 40 H -0.020 1.020 41 H 0.064 0.936 42 H 0.409 0.591 43 H 0.108 0.892 44 H 0.151 0.849 45 H 0.053 0.947 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.098 0.902 50 H 0.052 0.948 51 H 0.107 0.893 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.054 1.785 12.638 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C -0.184 4.184 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.357 4.357 7 H 0.104 0.896 8 C -0.264 4.264 9 N -0.600 5.600 10 Si 0.805 3.195 11 H -0.184 1.184 12 H -0.225 1.225 13 H -0.224 1.224 14 C 0.028 3.972 15 C 0.033 3.967 16 H 0.094 0.906 17 N -0.343 5.343 18 C 0.304 3.696 19 O -0.463 6.463 20 C -0.098 4.098 21 C -0.075 4.075 22 N -0.161 5.161 23 N -0.176 5.176 24 H 0.291 0.709 25 C -0.045 4.045 26 C -0.254 4.254 27 C -0.079 4.079 28 C -0.151 4.151 29 C -0.152 4.152 30 C -0.091 4.091 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.050 0.950 40 H -0.002 1.002 41 H 0.082 0.918 42 H 0.246 0.754 43 H 0.126 0.874 44 H 0.169 0.831 45 H 0.072 0.928 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.091 0.909 49 H 0.117 0.883 50 H 0.071 0.929 51 H 0.125 0.875 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.458 1.213 12.937 24.236 hybrid contribution 1.476 -0.722 -0.414 1.695 sum -18.982 0.491 12.523 22.746 Atomic orbital electron populations 1.21677 0.90721 1.02609 1.02979 1.21829 0.97707 0.95163 0.92701 1.21692 0.99833 0.93933 1.02970 1.21675 0.88815 0.93123 0.95133 1.44697 1.31856 1.50372 1.07394 1.19484 1.06298 1.16406 0.93480 0.89586 1.25643 1.00568 1.02815 0.97384 1.70154 1.30023 1.47205 1.12628 0.85026 0.78073 0.77928 0.78444 1.18371 1.22471 1.22433 1.21930 0.91980 0.97941 0.85395 1.22102 0.90859 0.86938 0.96832 0.90562 1.45609 1.45369 1.32609 1.10725 1.20770 0.82225 0.84476 0.82083 1.90675 1.44944 1.62745 1.47983 1.20047 1.02738 0.96333 0.90635 1.21540 0.94115 0.95652 0.96209 1.77420 1.23728 1.25363 0.89552 1.45930 1.28908 1.36714 1.06098 0.70868 1.21575 0.90777 0.93463 0.98726 1.20084 1.06205 1.08250 0.90880 1.20053 0.92978 0.95277 0.99625 1.21592 0.97492 1.03190 0.92810 1.21588 0.97894 0.95759 0.99966 1.20540 1.00026 1.00331 0.88224 0.91517 0.90520 0.91842 0.95115 0.90091 0.91356 0.94296 0.95734 0.95039 1.00188 0.91753 0.75408 0.87384 0.83100 0.92802 0.89997 0.89801 0.90925 0.88340 0.92940 0.87528 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.07 71.98 0.58 -2.10 16 2 C -0.07 -2.30 0.80 -50.99 -0.04 -2.34 16 3 C -0.13 -3.70 8.41 71.98 0.61 -3.09 16 4 C 0.14 5.32 6.41 86.73 0.56 5.87 16 5 N -0.62 -31.69 3.39 -691.98 -2.35 -34.04 16 6 C -0.23 -12.85 10.27 84.03 0.86 -11.98 16 7 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 8 C -0.07 -4.25 5.49 84.86 0.47 -3.78 16 9 N -0.95 -60.80 10.09 21.65 0.22 -60.58 16 10 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 14 C 0.15 8.14 5.27 86.86 0.46 8.60 16 15 C 0.14 5.53 2.67 46.39 0.12 5.65 16 16 H 0.08 3.20 7.44 -2.38 -0.02 3.18 16 17 N -0.69 -24.18 4.54 -435.96 -1.98 -26.16 16 18 C 0.52 19.42 7.82 87.66 0.69 20.11 16 19 O -0.58 -27.66 15.67 -3.04 -0.05 -27.71 16 20 C -0.06 -1.63 6.13 29.10 0.18 -1.45 16 21 C 0.09 2.95 5.71 42.93 0.24 3.20 16 22 N -0.34 -12.21 12.71 -47.63 -0.61 -12.82 16 23 N -0.47 -12.73 7.34 -47.99 -0.35 -13.09 16 24 H 0.45 9.09 8.96 -213.19 -1.91 7.17 16 25 C 0.08 2.01 7.08 41.64 0.29 2.30 16 26 C -0.24 -6.53 5.91 -20.14 -0.12 -6.65 16 27 C -0.04 -0.81 6.06 30.02 0.18 -0.63 16 28 C -0.11 -1.48 5.90 30.76 0.18 -1.30 16 29 C -0.11 -1.43 5.90 30.76 0.18 -1.25 16 30 C -0.05 -0.72 6.30 30.01 0.19 -0.53 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.28 6.48 -2.39 -0.02 1.26 16 34 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.40 7.76 -2.39 -0.02 1.38 16 38 H 0.02 0.96 7.84 -2.39 -0.02 0.94 16 39 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 40 H -0.02 -1.15 7.80 -2.39 -0.02 -1.17 16 41 H 0.06 4.06 5.87 -2.39 -0.01 4.04 16 42 H 0.41 12.03 7.18 -92.71 -0.67 11.37 16 43 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.15 2.89 7.87 -2.39 -0.02 2.87 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.34 7.94 -2.39 -0.02 1.32 16 47 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 48 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 49 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 50 H 0.05 0.85 8.11 -2.39 -0.02 0.83 16 51 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 52 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -85.63 405.35 0.90 -84.73 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -1.64 Total: 29.34 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.63 Total: 10.63 kcal Atomic # 7 Polarization: -141.62 SS G_CDS: -5.07 Total: -146.69 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -85.63 0.90 -84.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974581713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.535 kcal (2) G-P(sol) polarization free energy of solvation -85.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds