Wall clock time and date at job start Wed Apr 1 2020 04:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.91394 * 2 1 4 4 C 1.54904 * 111.00403 * 236.10128 * 2 1 3 5 5 N 1.47425 * 104.83110 * 278.93406 * 4 2 1 6 6 C 1.36933 * 125.64869 * 155.82832 * 5 4 2 7 7 H 1.08003 * 120.00807 * 359.97438 * 6 5 4 8 8 C 1.38821 * 120.00011 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99819 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99837 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47333 * 60.00426 * 10 8 6 12 12 H 1.48501 * 109.46987 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47259 * 299.99787 * 10 8 6 14 14 C 1.47024 * 108.70391 * 335.86972 * 5 4 2 15 15 C 1.54327 * 107.26733 * 1.06081 * 14 5 4 16 16 H 1.09003 * 110.86973 * 140.62425 * 15 14 5 17 17 N 1.46495 * 110.71922 * 263.82634 * 15 14 5 18 18 C 1.34779 * 120.00142 * 268.52614 * 17 15 14 19 19 O 1.21288 * 119.99812 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.00015 * 180.02562 * 18 17 15 21 21 C 1.50703 * 109.46907 * 179.97438 * 20 18 17 22 22 N 1.31071 * 125.96161 * 270.32438 * 21 20 18 23 23 N 1.40299 * 108.27087 * 180.10600 * 22 21 20 24 24 H 0.97001 * 126.09531 * 179.83217 * 23 22 21 25 25 C 1.34329 * 107.81502 * 359.55899 * 23 22 21 26 26 C 1.35750 * 107.84334 * 0.31523 * 25 23 22 27 27 C 1.50838 * 124.11045 * 179.82698 * 26 25 23 28 28 C 1.53364 * 108.37490 * 343.46730 * 27 26 25 29 29 C 1.53112 * 109.50396 * 49.95984 * 28 27 26 30 30 C 1.50827 * 128.03168 * 180.39360 * 25 23 22 31 31 H 1.09004 * 109.47194 * 296.09931 * 1 2 3 32 32 H 1.09000 * 109.47263 * 56.09692 * 1 2 3 33 33 H 1.09000 * 109.47058 * 176.09438 * 1 2 3 34 34 H 1.09001 * 109.47007 * 183.90289 * 3 2 1 35 35 H 1.09001 * 109.47069 * 303.90070 * 3 2 1 36 36 H 1.08999 * 109.47098 * 63.90232 * 3 2 1 37 37 H 1.09002 * 110.37279 * 37.77378 * 4 2 1 38 38 H 1.09003 * 110.36833 * 159.98514 * 4 2 1 39 39 H 0.97004 * 120.00120 * 179.97438 * 9 8 6 40 40 H 1.08994 * 109.88466 * 241.64419 * 14 5 4 41 41 H 1.08996 * 109.87989 * 120.47494 * 14 5 4 42 42 H 0.97003 * 120.00319 * 88.52597 * 17 15 14 43 43 H 1.08994 * 109.47481 * 59.99992 * 20 18 17 44 44 H 1.09000 * 109.47345 * 299.99107 * 20 18 17 45 45 H 1.09005 * 109.68762 * 103.19051 * 27 26 25 46 46 H 1.09004 * 109.68397 * 223.71312 * 27 26 25 47 47 H 1.08999 * 109.46459 * 169.96842 * 28 27 26 48 48 H 1.08993 * 109.46481 * 289.95560 * 28 27 26 49 49 H 1.08997 * 109.46489 * 49.72347 * 29 28 27 50 50 H 1.09005 * 109.46286 * 169.70245 * 29 28 27 51 51 H 1.08996 * 109.68183 * 283.14805 * 30 25 23 52 52 H 1.09002 * 109.68224 * 43.70356 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0852 -0.8065 -1.2003 5 7 2.0138 -2.2158 -0.7734 6 6 1.9444 -3.2998 -1.6072 7 1 1.9384 -3.1581 -2.6779 8 6 1.8819 -4.5809 -1.0764 9 7 1.8888 -4.7537 0.2284 10 14 1.7865 -6.0596 -2.2139 11 1 2.9876 -6.0912 -3.0865 12 1 1.7290 -7.3036 -1.4049 13 1 0.5664 -5.9596 -3.0544 14 6 2.0285 -2.2646 0.6960 15 6 2.0861 -0.8079 1.2022 16 1 1.4540 -0.6767 2.0805 17 7 3.4666 -0.4155 1.4961 18 6 3.9655 -0.5840 2.7368 19 8 3.2713 -1.0601 3.6100 20 6 5.3854 -0.1799 3.0393 21 6 5.6928 -0.4698 4.4859 22 7 5.5111 0.3517 5.4910 23 7 5.9221 -0.2941 6.6667 24 1 5.9014 0.0802 7.5614 25 6 6.3437 -1.5252 6.3335 26 6 6.2136 -1.6597 4.9890 27 6 6.5864 -2.9048 4.2235 28 6 7.4847 -3.7702 5.1158 29 6 6.8305 -3.9386 6.4898 30 6 6.8736 -2.6042 7.2445 31 1 -0.3634 0.4521 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0700 34 1 3.1636 1.4026 -0.0699 35 1 1.6704 1.9732 -0.8530 36 1 1.7835 1.9300 0.9229 37 1 1.4672 -0.6460 -2.0837 38 1 3.1175 -0.5218 -1.4037 39 1 1.8447 -5.6489 0.5993 40 1 2.9063 -2.8116 1.0400 41 1 1.1219 -2.7479 1.0598 42 1 4.0218 -0.0345 0.7979 43 1 5.5082 0.8862 2.8487 44 1 6.0672 -0.7438 2.4027 45 1 5.6848 -3.4591 3.9625 46 1 7.1243 -2.6306 3.3160 47 1 7.6195 -4.7488 4.6552 48 1 8.4547 -3.2868 5.2322 49 1 5.7939 -4.2507 6.3627 50 1 7.3705 -4.6953 7.0589 51 1 7.9011 -2.3747 7.5265 52 1 6.2526 -2.6678 8.1381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974581716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:26 Heat of formation + Delta-G solvation = 20.849018 kcal Electronic energy + Delta-G solvation = -31711.920355 eV Core-core repulsion = 27711.696318 eV Total energy + Delta-G solvation = -4000.224037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.55779 -41.12685 -39.37683 -37.37381 -35.65216 -34.57283 -34.34954 -32.58076 -31.26667 -30.36957 -29.95815 -28.95653 -27.93227 -27.33677 -25.12193 -24.45288 -23.03780 -22.62174 -21.67088 -20.79617 -19.95007 -19.65630 -18.65954 -18.47357 -18.09194 -17.27620 -16.64334 -16.33319 -15.98623 -15.62544 -15.47551 -15.30211 -14.90672 -14.84537 -14.75635 -14.51773 -14.43589 -14.02358 -13.92082 -13.76790 -13.70655 -13.42502 -13.12957 -13.00677 -12.91322 -12.83040 -12.73390 -12.62430 -12.55794 -12.14859 -11.82654 -11.79126 -11.72481 -11.71579 -11.50467 -11.46675 -11.38812 -11.28806 -10.98398 -10.70182 -10.22529 -9.92562 -9.20942 -8.85892 -7.80200 -5.16925 0.87927 1.45658 1.49141 1.55498 1.60258 1.73490 1.91539 2.44683 2.52376 3.37843 3.51770 3.53684 3.68144 3.75504 3.88573 3.99538 4.01722 4.02535 4.10876 4.18244 4.31266 4.36372 4.42983 4.51658 4.54970 4.64056 4.65924 4.73240 4.78706 4.79729 4.85950 4.91774 4.98079 5.01676 5.06354 5.08405 5.15991 5.19204 5.19701 5.29648 5.34581 5.38038 5.41354 5.47409 5.48729 5.58427 5.68840 5.75209 5.80218 6.20485 6.46019 6.66070 6.71613 7.11205 7.37162 7.81229 8.45860 9.28771 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.003415 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.300174 B = 8197.217933 C =10317.250267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.123 4.123 4 C 0.139 3.861 5 N -0.619 5.619 6 C -0.238 4.238 7 H 0.087 0.913 8 C -0.067 4.067 9 N -0.954 5.954 10 Si 0.976 3.024 11 H -0.274 1.274 12 H -0.300 1.300 13 H -0.277 1.277 14 C 0.196 3.804 15 C 0.139 3.861 16 H 0.070 0.930 17 N -0.698 5.698 18 C 0.516 3.484 19 O -0.583 6.583 20 C -0.055 4.055 21 C 0.091 3.909 22 N -0.319 5.319 23 N -0.463 5.463 24 H 0.449 0.551 25 C 0.089 3.911 26 C -0.249 4.249 27 C -0.045 4.045 28 C -0.113 4.113 29 C -0.116 4.116 30 C -0.050 4.050 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.243 0.757 40 H 0.002 0.998 41 H 0.000 1.000 42 H 0.412 0.588 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.036 0.964 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.045 0.955 50 H 0.099 0.901 51 H 0.112 0.888 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.995 11.522 10.076 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.077 4.077 3 C -0.180 4.180 4 C 0.014 3.986 5 N -0.345 5.345 6 C -0.367 4.367 7 H 0.105 0.895 8 C -0.260 4.260 9 N -0.603 5.603 10 Si 0.804 3.196 11 H -0.200 1.200 12 H -0.227 1.227 13 H -0.203 1.203 14 C 0.069 3.931 15 C 0.033 3.967 16 H 0.088 0.912 17 N -0.350 5.350 18 C 0.303 3.697 19 O -0.463 6.463 20 C -0.096 4.096 21 C -0.074 4.074 22 N -0.143 5.143 23 N -0.172 5.172 24 H 0.295 0.705 25 C -0.041 4.041 26 C -0.260 4.260 27 C -0.083 4.083 28 C -0.151 4.151 29 C -0.154 4.154 30 C -0.089 4.089 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.018 0.982 42 H 0.249 0.751 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.054 0.946 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.064 0.936 50 H 0.118 0.882 51 H 0.130 0.870 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.096 12.149 11.034 20.388 hybrid contribution -0.220 -1.834 -0.470 1.906 sum 11.876 10.316 10.564 18.949 Atomic orbital electron populations 1.21595 0.93212 1.00949 1.02430 1.21985 0.96432 0.95972 0.93272 1.21641 1.01294 0.92328 1.02775 1.21893 0.97851 0.83229 0.95635 1.44659 1.86606 1.01585 1.01669 1.19448 1.42404 0.85058 0.89775 0.89516 1.25650 1.02891 1.00288 0.97185 1.70238 1.58422 1.20488 1.11132 0.85187 0.78353 0.78459 0.77562 1.19969 1.22653 1.20265 1.21046 0.96968 0.91380 0.83663 1.22008 0.82854 0.94654 0.97218 0.91212 1.45756 1.13917 1.63915 1.11432 1.20882 0.89628 0.77288 0.81945 1.90698 1.62089 1.45854 1.47643 1.20043 0.92907 1.06193 0.90500 1.21488 0.98040 0.92991 0.94924 1.77278 1.23758 1.22094 0.91178 1.45861 1.51052 1.11026 1.09273 0.70455 1.21424 0.98809 0.88289 0.95614 1.20006 1.14098 0.97967 0.93911 1.19994 0.98553 0.91965 0.97834 1.21577 0.98660 0.99736 0.95113 1.21586 1.01073 0.96512 0.96206 1.20511 1.02596 0.89859 0.95922 0.92007 0.90250 0.95233 0.91355 0.90404 0.92131 0.93464 0.94668 0.94814 0.97936 0.98192 0.75068 0.84640 0.85008 0.94584 0.90725 0.90940 0.90172 0.93618 0.88224 0.87041 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 8.57 71.98 0.62 -3.34 16 2 C -0.08 -2.42 0.83 -50.79 -0.04 -2.46 16 3 C -0.12 -2.75 8.22 71.98 0.59 -2.16 16 4 C 0.14 5.27 6.12 86.85 0.53 5.80 16 5 N -0.62 -31.51 3.38 -691.99 -2.34 -33.85 16 6 C -0.24 -13.33 10.28 84.04 0.86 -12.47 16 7 H 0.09 4.57 7.83 -2.91 -0.02 4.54 16 8 C -0.07 -3.93 5.49 84.87 0.47 -3.46 16 9 N -0.95 -60.23 10.31 21.65 0.22 -60.01 16 10 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 C 0.20 10.27 4.79 86.73 0.42 10.69 16 15 C 0.14 5.52 2.59 46.18 0.12 5.64 16 16 H 0.07 3.04 7.45 -2.39 -0.02 3.02 16 17 N -0.70 -23.13 4.45 -436.92 -1.95 -25.08 16 18 C 0.52 18.50 7.82 87.66 0.69 19.18 16 19 O -0.58 -27.20 15.68 -3.05 -0.05 -27.25 16 20 C -0.06 -1.47 6.13 29.10 0.18 -1.29 16 21 C 0.09 2.81 5.71 42.93 0.24 3.06 16 22 N -0.32 -9.89 12.71 -47.62 -0.61 -10.50 16 23 N -0.46 -11.14 7.34 -47.98 -0.35 -11.49 16 24 H 0.45 7.33 8.96 -213.19 -1.91 5.42 16 25 C 0.09 2.12 7.08 41.64 0.29 2.42 16 26 C -0.25 -7.23 5.91 -20.14 -0.12 -7.35 16 27 C -0.05 -1.23 6.05 30.01 0.18 -1.04 16 28 C -0.11 -2.20 5.90 30.75 0.18 -2.02 16 29 C -0.12 -1.98 5.90 30.75 0.18 -1.80 16 30 C -0.05 -0.75 6.30 30.01 0.19 -0.56 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.03 1.16 7.91 -2.39 -0.02 1.14 16 34 H 0.07 1.33 6.48 -2.39 -0.02 1.31 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 38 H 0.04 1.24 7.98 -2.39 -0.02 1.22 16 39 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.00 0.15 7.41 -2.39 -0.02 0.13 16 41 H 0.00 0.00 7.38 -2.39 -0.02 -0.02 16 42 H 0.41 10.80 7.11 -92.71 -0.66 10.14 16 43 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.13 2.90 7.87 -2.39 -0.02 2.89 16 45 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.07 1.85 7.94 -2.38 -0.02 1.83 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.08 1.28 8.11 -2.39 -0.02 1.26 16 49 H 0.04 1.02 8.11 -2.39 -0.02 1.00 16 50 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 51 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -84.19 406.78 0.90 -83.29 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -1.64 Total: 27.35 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 5.58 Total: 8.83 kcal Atomic # 7 Polarization: -135.91 SS G_CDS: -5.02 Total: -140.93 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -84.19 0.90 -83.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974581716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.142 kcal (2) G-P(sol) polarization free energy of solvation -84.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds