Wall clock time and date at job start Wed Apr 1 2020 04:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.91388 * 2 1 4 4 C 1.54911 * 111.00206 * 236.10454 * 2 1 3 5 5 N 1.47429 * 104.82827 * 278.92881 * 4 2 1 6 6 C 1.36942 * 125.64425 * 155.82562 * 5 4 2 7 7 H 1.07998 * 120.00343 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99809 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99916 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00277 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46885 * 60.00113 * 10 8 6 12 12 H 1.48496 * 109.47474 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46903 * 300.00552 * 10 8 6 14 14 C 1.47022 * 108.70625 * 335.87584 * 5 4 2 15 15 C 1.54320 * 107.26989 * 1.05742 * 14 5 4 16 16 H 1.08996 * 110.87496 * 140.62959 * 15 14 5 17 17 N 1.46506 * 110.72004 * 263.83378 * 15 14 5 18 18 C 1.34781 * 119.99569 * 268.51928 * 17 15 14 19 19 O 1.21279 * 120.00290 * 0.02562 * 18 17 15 20 20 C 1.50699 * 119.99923 * 179.97438 * 18 17 15 21 21 C 1.50701 * 109.47221 * 180.02562 * 20 18 17 22 22 C 1.34856 * 125.96491 * 125.00115 * 21 20 18 23 23 N 1.36308 * 106.68777 * 179.97438 * 22 21 20 24 24 C 1.35418 * 107.40068 * 0.03981 * 23 22 21 25 25 N 1.30096 * 108.62981 * 359.94663 * 24 23 22 26 26 C 1.51158 * 124.00061 * 179.86957 * 24 23 22 27 27 C 1.53398 * 108.14560 * 344.03824 * 26 24 23 28 28 C 1.53148 * 109.27698 * 48.83601 * 27 26 24 29 29 C 1.46477 * 127.77591 * 180.02562 * 23 22 21 30 30 H 1.09001 * 109.47157 * 296.09267 * 1 2 3 31 31 H 1.09001 * 109.47407 * 56.09746 * 1 2 3 32 32 H 1.09003 * 109.46955 * 176.09803 * 1 2 3 33 33 H 1.09001 * 109.47110 * 183.90530 * 3 2 1 34 34 H 1.09001 * 109.47112 * 303.90463 * 3 2 1 35 35 H 1.08999 * 109.46958 * 63.90401 * 3 2 1 36 36 H 1.08994 * 110.37109 * 37.77160 * 4 2 1 37 37 H 1.08998 * 110.36636 * 159.98664 * 4 2 1 38 38 H 0.97000 * 119.99796 * 180.02562 * 9 8 6 39 39 H 1.09002 * 109.87805 * 241.64094 * 14 5 4 40 40 H 1.08994 * 109.88206 * 120.47518 * 14 5 4 41 41 H 0.96996 * 120.00632 * 88.52154 * 17 15 14 42 42 H 1.09002 * 109.46975 * 60.00138 * 20 18 17 43 43 H 1.09001 * 109.47433 * 300.00876 * 20 18 17 44 44 H 1.08001 * 126.65162 * 359.97340 * 22 21 20 45 45 H 1.08999 * 109.77464 * 224.36340 * 26 24 23 46 46 H 1.08999 * 109.71073 * 103.67967 * 26 24 23 47 47 H 1.09002 * 109.51221 * 288.88058 * 27 26 24 48 48 H 1.08997 * 109.50592 * 168.78547 * 27 26 24 49 49 H 1.09000 * 109.46695 * 50.49998 * 28 27 26 50 50 H 1.09003 * 109.46864 * 170.48488 * 28 27 26 51 51 H 1.08996 * 109.57864 * 43.11139 * 29 23 22 52 52 H 1.08996 * 109.69312 * 282.76940 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 2.0139 -2.2158 -0.7734 6 6 1.9445 -3.2998 -1.6074 7 1 1.9391 -3.1580 -2.6780 8 6 1.8809 -4.5808 -1.0766 9 7 1.8870 -4.7536 0.2282 10 14 1.7854 -6.0595 -2.2140 11 1 2.9871 -6.0917 -3.0860 12 1 1.7268 -7.3034 -1.4051 13 1 0.5659 -5.9588 -3.0554 14 6 2.0286 -2.2647 0.6959 15 6 2.0862 -0.8080 1.2021 16 1 1.4542 -0.6768 2.0804 17 7 3.4668 -0.4156 1.4960 18 6 3.9656 -0.5840 2.7368 19 8 3.2718 -1.0609 3.6097 20 6 5.3859 -0.1810 3.0390 21 6 5.6936 -0.4717 4.4853 22 6 6.7161 -1.2230 4.9420 23 7 6.6243 -1.2240 6.3020 24 6 5.5476 -0.4736 6.6357 25 7 4.9976 -0.0274 5.5444 26 6 5.0977 -0.2260 8.0573 27 6 5.7858 -1.2558 8.9624 28 6 7.2843 -1.2843 8.6476 29 6 7.5040 -1.8973 7.2602 30 1 -0.3633 0.4520 0.9229 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1636 1.4026 -0.0700 34 1 1.6704 1.9732 -0.8529 35 1 1.7836 1.9299 0.9229 36 1 1.4672 -0.6460 -2.0837 37 1 3.1175 -0.5218 -1.4038 38 1 1.8429 -5.6488 0.5991 39 1 2.9065 -2.8117 1.0398 40 1 1.1220 -2.7480 1.0598 41 1 4.0219 -0.0345 0.7978 42 1 5.5095 0.8850 2.8480 43 1 6.0671 -0.7454 2.4023 44 1 7.4628 -1.7264 4.3457 45 1 4.0159 -0.3400 8.1269 46 1 5.3824 0.7807 8.3630 47 1 5.3573 -2.2419 8.7832 48 1 5.6383 -0.9791 10.0063 49 1 7.6779 -0.2679 8.6622 50 1 7.8014 -1.8848 9.3960 51 1 8.5431 -1.7606 6.9608 52 1 7.2693 -2.9613 7.2895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974618175.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:33 Heat of formation + Delta-G solvation = 17.930082 kcal Electronic energy + Delta-G solvation = -31186.684057 eV Core-core repulsion = 27186.333446 eV Total energy + Delta-G solvation = -4000.350611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.22188 -41.09300 -39.34490 -37.48157 -35.63692 -34.39567 -34.13011 -32.74147 -32.58550 -30.07996 -29.61698 -28.42105 -27.82419 -27.32119 -25.22990 -24.67527 -23.11873 -22.53171 -21.63585 -20.90093 -20.08829 -19.85810 -18.66655 -18.03414 -17.70577 -17.19390 -16.74849 -16.59251 -16.13081 -15.65811 -15.50607 -15.33465 -15.11194 -15.05175 -14.85638 -14.57492 -14.48296 -14.42009 -14.04839 -13.75240 -13.44407 -13.41301 -13.18281 -13.09273 -12.92071 -12.75152 -12.64261 -12.62007 -12.55968 -12.15728 -12.05456 -11.94351 -11.86182 -11.83070 -11.71447 -11.49288 -11.28695 -10.87849 -10.75679 -10.62032 -10.36635 -9.86026 -9.11940 -8.87682 -7.81557 -5.18810 1.11345 1.43410 1.47575 1.53916 1.85792 1.93702 2.07010 2.49010 2.55202 3.35927 3.36767 3.53882 3.63050 3.72719 3.75729 3.80347 3.98604 4.00341 4.10827 4.19047 4.25018 4.35173 4.41431 4.43454 4.46433 4.54124 4.57330 4.63483 4.75479 4.83686 4.84161 4.86013 4.91366 4.96529 4.97530 4.99241 5.08609 5.10062 5.16253 5.19044 5.27578 5.35968 5.39045 5.43526 5.47112 5.58356 5.74047 5.82685 5.84229 6.18541 6.36033 6.76602 7.09132 7.27937 7.50384 7.79503 8.44502 9.27150 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.002686 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.411255 B =10423.722294 C =11828.456100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.121 4.121 4 C 0.139 3.861 5 N -0.620 5.620 6 C -0.236 4.236 7 H 0.088 0.912 8 C -0.072 4.072 9 N -0.954 5.954 10 Si 0.979 3.021 11 H -0.274 1.274 12 H -0.301 1.301 13 H -0.275 1.275 14 C 0.196 3.804 15 C 0.140 3.860 16 H 0.066 0.934 17 N -0.703 5.703 18 C 0.508 3.492 19 O -0.578 6.578 20 C -0.043 4.043 21 C -0.017 4.017 22 C -0.049 4.049 23 N -0.457 5.457 24 C 0.186 3.814 25 N -0.510 5.510 26 C -0.034 4.034 27 C -0.121 4.121 28 C -0.126 4.126 29 C 0.093 3.907 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.035 0.965 38 H 0.242 0.758 39 H -0.001 1.001 40 H -0.001 1.001 41 H 0.410 0.590 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.202 0.798 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.107 0.893 49 H 0.078 0.922 50 H 0.117 0.883 51 H 0.111 0.889 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.545 13.836 13.711 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.077 4.077 3 C -0.179 4.179 4 C 0.015 3.985 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.106 0.894 8 C -0.265 4.265 9 N -0.604 5.604 10 Si 0.807 3.193 11 H -0.199 1.199 12 H -0.227 1.227 13 H -0.201 1.201 14 C 0.070 3.930 15 C 0.034 3.966 16 H 0.084 0.916 17 N -0.356 5.356 18 C 0.296 3.704 19 O -0.456 6.456 20 C -0.084 4.084 21 C -0.146 4.146 22 C -0.183 4.183 23 N -0.140 5.140 24 C -0.077 4.077 25 N -0.229 5.229 26 C -0.073 4.073 27 C -0.159 4.159 28 C -0.164 4.164 29 C -0.028 4.028 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.247 0.753 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.219 0.781 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.076 0.924 48 H 0.125 0.875 49 H 0.097 0.903 50 H 0.135 0.865 51 H 0.129 0.871 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.474 13.694 14.393 24.005 hybrid contribution 0.360 -2.002 -0.872 2.213 sum 13.833 11.692 13.521 22.603 Atomic orbital electron populations 1.21594 0.93230 1.00911 1.02416 1.21986 0.96427 0.95976 0.93292 1.21626 1.01245 0.92336 1.02701 1.21888 0.97833 0.83177 0.95636 1.44684 1.86567 1.01658 1.01657 1.19458 1.42208 0.85019 0.89787 0.89399 1.25714 1.03024 1.00470 0.97275 1.70267 1.58523 1.20389 1.11201 0.85138 0.78392 0.78268 0.77460 1.19936 1.22715 1.20142 1.21037 0.96749 0.91537 0.83688 1.21952 0.83185 0.94466 0.97031 0.91568 1.45806 1.13756 1.64414 1.11612 1.21169 0.90302 0.77349 0.81618 1.90690 1.62062 1.45379 1.47491 1.19917 0.92178 1.05097 0.91186 1.20338 0.96017 1.03791 0.94497 1.22676 1.04817 1.06947 0.83900 1.45546 1.23454 1.38544 1.06415 1.23922 0.88877 0.97246 0.97647 1.69853 1.28523 1.26451 0.98105 1.20344 1.01153 1.01696 0.84061 1.21685 0.95118 0.98416 1.00708 1.21907 0.96876 1.03056 0.94544 1.22342 0.94535 0.97279 0.88642 0.92074 0.90173 0.95279 0.91435 0.90346 0.92260 0.93373 0.94703 0.94932 0.98270 0.98300 0.75308 0.85673 0.85391 0.78120 0.90242 0.88102 0.92362 0.87479 0.90282 0.86463 0.87066 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 8.57 71.98 0.62 -3.49 16 2 C -0.08 -2.54 0.83 -50.79 -0.04 -2.58 16 3 C -0.12 -2.90 8.22 71.98 0.59 -2.31 16 4 C 0.14 5.47 6.12 86.86 0.53 6.00 16 5 N -0.62 -32.39 3.38 -691.99 -2.34 -34.73 16 6 C -0.24 -13.46 10.28 84.03 0.86 -12.59 16 7 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 8 C -0.07 -4.30 5.49 84.86 0.47 -3.83 16 9 N -0.95 -61.58 10.31 21.65 0.22 -61.36 16 10 Si 0.98 47.49 29.55 68.60 2.03 49.51 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.20 10.66 4.79 86.73 0.42 11.08 16 15 C 0.14 5.85 2.59 46.18 0.12 5.97 16 16 H 0.07 3.05 7.45 -2.39 -0.02 3.03 16 17 N -0.70 -24.80 4.45 -436.92 -1.95 -26.75 16 18 C 0.51 19.49 7.82 87.66 0.69 20.17 16 19 O -0.58 -28.74 15.21 -3.02 -0.05 -28.79 16 20 C -0.04 -1.21 6.26 29.10 0.18 -1.03 16 21 C -0.02 -0.55 5.87 41.41 0.24 -0.31 16 22 C -0.05 -1.28 11.53 83.22 0.96 -0.32 16 23 N -0.46 -10.72 3.13 -513.67 -1.61 -12.33 16 24 C 0.19 5.31 7.65 138.27 1.06 6.37 16 25 N -0.51 -18.46 10.62 -175.57 -1.86 -20.32 16 26 C -0.03 -0.66 6.34 30.13 0.19 -0.47 16 27 C -0.12 -1.48 5.95 30.78 0.18 -1.30 16 28 C -0.13 -1.09 5.94 30.73 0.18 -0.91 16 29 C 0.09 1.20 6.98 86.47 0.60 1.81 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.03 1.17 7.91 -2.39 -0.02 1.15 16 33 H 0.07 1.42 6.48 -2.39 -0.02 1.40 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 37 H 0.04 1.27 7.98 -2.39 -0.02 1.25 16 38 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.00 -0.06 7.41 -2.39 -0.02 -0.07 16 40 H 0.00 -0.07 7.38 -2.39 -0.02 -0.09 16 41 H 0.41 11.54 7.11 -92.71 -0.66 10.88 16 42 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.13 2.78 8.11 -2.39 -0.02 2.76 16 44 H 0.20 3.70 8.06 -2.91 -0.02 3.67 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 47 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 48 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.08 0.66 8.12 -2.39 -0.02 0.65 16 50 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 51 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -90.61 407.12 2.54 -88.07 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.25 Total: 24.44 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 7.85 Total: 22.26 kcal Atomic # 7 Polarization: -147.95 SS G_CDS: -7.54 Total: -155.49 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.79 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -90.61 2.54 -88.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974618175.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.998 kcal (2) G-P(sol) polarization free energy of solvation -90.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds