Wall clock time and date at job start Wed Apr 1 2020 04:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28831 * 125.15097 * 2 1 4 4 C 1.30105 * 110.77874 * 179.97438 * 3 2 1 5 5 C 1.40091 * 107.72876 * 0.10174 * 4 3 2 6 6 C 1.37003 * 125.15101 * 179.97438 * 2 1 3 7 7 C 1.47164 * 127.04265 * 0.03708 * 6 2 1 8 8 O 1.21620 * 119.99998 * 267.12318 * 7 6 2 9 9 N 1.34782 * 119.99727 * 87.13162 * 7 6 2 10 10 C 1.46493 * 119.99763 * 185.30491 * 9 7 6 11 11 H 1.08998 * 110.64154 * 34.29616 * 10 9 7 12 12 C 1.54326 * 110.72143 * 271.15574 * 10 9 7 13 13 N 1.47482 * 107.03384 * 263.78966 * 12 10 9 14 14 C 1.36941 * 125.58947 * 181.00202 * 13 12 10 15 15 H 1.08007 * 119.99833 * 180.02562 * 14 13 12 16 16 C 1.38805 * 120.00392 * 0.02822 * 14 13 12 17 17 N 1.31625 * 119.99850 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00177 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47301 * 119.99760 * 18 16 14 21 21 H 1.48504 * 109.46778 * 239.99374 * 18 16 14 22 22 C 1.47429 * 108.76139 * 1.02531 * 13 12 10 23 23 C 1.54910 * 104.82853 * 335.89077 * 22 13 12 24 24 C 1.53000 * 111.00552 * 278.93486 * 23 22 13 25 25 C 1.52997 * 111.00156 * 155.08602 * 23 22 13 26 26 C 1.50389 * 124.19899 * 179.83447 * 5 4 3 27 27 C 1.53498 * 108.12488 * 343.68548 * 26 5 4 28 28 C 1.53027 * 109.70098 * 50.03126 * 27 26 5 29 29 C 1.50867 * 129.05310 * 180.13914 * 4 3 2 30 30 H 1.09001 * 109.47244 * 85.26098 * 1 2 3 31 31 H 1.08997 * 109.47254 * 205.25858 * 1 2 3 32 32 H 1.09000 * 109.47316 * 325.25977 * 1 2 3 33 33 H 0.96998 * 119.99977 * 5.30423 * 9 7 6 34 34 H 1.09002 * 109.88328 * 23.24829 * 12 10 9 35 35 H 1.09000 * 109.88447 * 144.40978 * 12 10 9 36 36 H 0.96996 * 119.99786 * 180.02562 * 17 16 14 37 37 H 1.08997 * 110.36469 * 217.05911 * 22 13 12 38 38 H 1.08990 * 110.45693 * 94.77815 * 22 13 12 39 39 H 1.08997 * 109.46835 * 172.19617 * 24 23 22 40 40 H 1.09000 * 109.47336 * 292.19707 * 24 23 22 41 41 H 1.09004 * 109.46696 * 52.19859 * 24 23 22 42 42 H 1.08999 * 109.46842 * 307.80179 * 25 23 22 43 43 H 1.08996 * 109.47254 * 67.80210 * 25 23 22 44 44 H 1.08999 * 109.46977 * 187.80634 * 25 23 22 45 45 H 1.09007 * 109.72789 * 224.03037 * 26 5 4 46 46 H 1.09001 * 109.77218 * 103.36811 * 26 5 4 47 47 H 1.08997 * 109.43347 * 289.95518 * 27 26 5 48 48 H 1.09002 * 109.42872 * 170.09916 * 27 26 5 49 49 H 1.08992 * 109.40198 * 168.46847 * 28 27 26 50 50 H 1.08997 * 109.33247 * 48.67596 * 28 27 26 51 51 H 1.09000 * 109.72457 * 43.42380 * 29 4 3 52 52 H 1.09000 * 109.72129 * 282.76220 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2067 1.0534 0.0000 4 6 3.4670 0.7304 0.0005 5 6 3.5490 -0.6681 -0.0014 6 6 2.2537 -1.1202 0.0005 7 6 1.8037 -2.5213 0.0004 8 8 1.6675 -3.1164 1.0523 9 7 1.5426 -3.1451 -1.1655 10 6 0.9844 -4.4995 -1.1626 11 1 0.3097 -4.6352 -0.3173 12 6 2.1107 -5.5543 -1.1369 13 7 2.3427 -5.9726 -2.5320 14 6 3.2511 -6.9119 -2.9418 15 1 3.3465 -7.1491 -3.9911 16 6 4.0491 -7.5592 -2.0086 17 7 3.9332 -7.2698 -0.7298 18 14 5.2886 -8.8400 -2.5677 19 1 5.2236 -8.9802 -4.0446 20 1 6.6544 -8.4137 -2.1702 21 1 4.9729 -10.1447 -1.9326 22 6 1.4363 -5.2126 -3.4119 23 6 0.2555 -4.7958 -2.4998 24 6 -0.7435 -5.9432 -2.3374 25 6 -0.4361 -3.5413 -3.0371 26 6 4.8402 -1.4391 -0.0051 27 6 5.9672 -0.4813 -0.4160 28 6 5.8934 0.7938 0.4269 29 6 4.6786 1.6294 0.0036 30 1 -0.3634 0.0849 -1.0241 31 1 -0.3633 -0.9294 0.4385 32 1 -0.3634 0.8445 0.5856 33 1 1.7244 -2.6972 -2.0065 34 1 3.0189 -5.1168 -0.7223 35 1 1.8026 -6.4111 -0.5377 36 1 4.4911 -7.7219 -0.0778 37 1 1.0816 -5.8435 -4.2270 38 1 1.9400 -4.3306 -3.8073 39 1 -1.4865 -5.6743 -1.5866 40 1 -1.2403 -6.1299 -3.2895 41 1 -0.2155 -6.8425 -2.0205 42 1 0.3068 -2.7624 -3.2091 43 1 -0.9390 -3.7771 -3.9749 44 1 -1.1686 -3.1907 -2.3101 45 1 4.7765 -2.2602 -0.7192 46 1 5.0373 -1.8330 0.9919 47 1 5.8597 -0.2259 -1.4702 48 1 6.9306 -0.9657 -0.2573 49 1 6.8026 1.3771 0.2813 50 1 5.7997 0.5258 1.4792 51 1 4.5293 2.4456 0.7105 52 1 4.8399 2.0327 -0.9961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974625239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:20 Heat of formation + Delta-G solvation = 56.967904 kcal Electronic energy + Delta-G solvation = -32411.140294 eV Core-core repulsion = 28412.482490 eV Total energy + Delta-G solvation = -3998.657804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.58819 -39.69558 -37.85121 -37.02930 -33.91761 -33.12467 -32.70790 -31.86994 -30.71468 -29.33526 -28.05917 -27.31320 -26.79942 -25.66145 -23.96321 -23.40957 -22.44624 -21.94096 -20.25452 -19.67750 -19.14485 -18.69169 -17.44146 -16.72308 -16.43124 -15.85233 -15.66949 -15.02957 -14.85141 -14.46640 -14.04336 -13.95621 -13.90320 -13.82380 -13.65707 -13.34091 -13.11021 -13.02548 -12.79853 -12.61399 -12.47841 -12.07278 -12.03571 -11.81004 -11.73844 -11.42509 -11.25771 -11.12798 -11.01602 -10.86982 -10.80441 -10.76961 -10.46210 -10.30171 -10.16229 -10.07787 -9.90173 -9.81299 -9.66258 -8.93738 -8.67280 -8.55316 -8.50956 -6.84143 -5.69717 -3.04673 1.76707 2.20800 2.66200 2.91780 3.39977 3.45050 3.46151 3.48218 4.25203 4.49402 4.74272 4.79156 4.86057 4.89278 4.90334 4.94624 5.14451 5.20401 5.21003 5.24012 5.34313 5.48564 5.52326 5.55060 5.56967 5.59788 5.66296 5.73327 5.84606 5.89115 5.94406 5.95671 6.06645 6.09866 6.11502 6.16492 6.17038 6.31330 6.32940 6.36024 6.51022 6.56625 6.61567 6.63636 6.65363 6.81247 6.88729 7.51993 7.60500 7.73839 7.85397 8.11507 8.23599 8.39624 9.20663 9.81720 10.46644 11.41108 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010279 B = 0.003975 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.235322 B = 7043.116792 C = 8960.703124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.287 5.287 3 N -0.282 5.282 4 C 0.032 3.968 5 C -0.151 4.151 6 C -0.016 4.016 7 C 0.590 3.410 8 O -0.519 6.519 9 N -0.695 5.695 10 C 0.123 3.877 11 H 0.088 0.912 12 C 0.176 3.824 13 N -0.603 5.603 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.918 5.918 18 Si 0.909 3.091 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.144 3.856 23 C -0.089 4.089 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.050 4.050 27 C -0.115 4.115 28 C -0.117 4.117 29 C -0.028 4.028 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.398 0.602 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.252 0.748 37 H 0.041 0.959 38 H 0.015 0.985 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.077 0.923 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 16.668 -1.029 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.075 5.075 3 N -0.111 5.111 4 C -0.128 4.128 5 C -0.162 4.162 6 C -0.142 4.142 7 C 0.371 3.629 8 O -0.393 6.393 9 N -0.346 5.346 10 C 0.018 3.982 11 H 0.106 0.894 12 C 0.051 3.949 13 N -0.329 5.329 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.202 4.202 17 N -0.565 5.565 18 Si 0.740 3.260 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.018 3.982 23 C -0.090 4.090 24 C -0.183 4.183 25 C -0.189 4.189 26 C -0.088 4.088 27 C -0.153 4.153 28 C -0.155 4.155 29 C -0.067 4.067 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.234 0.766 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.387 16.965 -0.165 18.129 hybrid contribution 1.150 -1.169 -0.613 1.751 sum -5.237 15.797 -0.778 16.661 Atomic orbital electron populations 1.22083 0.73402 1.05150 1.04188 1.45600 1.06972 1.01466 1.53469 1.72742 1.03656 1.13306 1.21419 1.21828 0.91891 0.93300 1.05790 1.20363 0.93342 0.94061 1.08394 1.21049 0.91643 0.89104 1.12440 1.16917 0.77682 0.83689 0.84567 1.90857 1.50794 1.66265 1.31399 1.46025 1.63563 1.17405 1.07578 1.22582 0.96942 0.81359 0.97297 0.89375 1.21602 0.93720 0.93098 0.86491 1.44548 1.42159 1.44742 1.01478 1.19060 1.11512 1.12604 0.92642 0.90452 1.24792 0.99895 1.00099 0.95426 1.69963 1.42072 1.44655 0.99790 0.86089 0.81118 0.81219 0.77584 1.20581 1.21785 1.21787 1.21615 0.89059 0.94540 0.93005 1.22015 0.95869 0.95519 0.95619 1.21598 0.97480 0.98383 1.00863 1.21682 0.99760 0.96827 1.00635 1.20038 0.89305 0.96852 1.02614 1.21564 0.98312 0.95402 0.99991 1.21578 0.96969 0.96398 1.00513 1.19976 0.88819 0.95686 1.02255 0.89875 0.88964 0.88718 0.76640 0.93091 0.92669 0.93704 0.94041 0.96768 0.93348 0.92793 0.91081 0.93186 0.92482 0.92928 0.90266 0.90459 0.91660 0.91217 0.91155 0.91531 0.90449 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.22 59.84 0.67 1.57 16 2 N -0.29 -4.01 3.77 -64.11 -0.24 -4.25 16 3 N -0.28 -4.10 11.89 33.65 0.40 -3.70 16 4 C 0.03 0.45 7.13 -82.55 -0.59 -0.13 16 5 C -0.15 -2.34 6.02 -104.46 -0.63 -2.97 16 6 C -0.02 -0.25 6.70 -82.31 -0.55 -0.80 16 7 C 0.59 10.49 6.95 -12.63 -0.09 10.41 16 8 O -0.52 -11.20 16.85 5.26 0.09 -11.11 16 9 N -0.69 -11.47 4.50 -53.19 -0.24 -11.71 16 10 C 0.12 2.24 2.50 -66.10 -0.17 2.08 16 11 H 0.09 1.65 7.61 -51.93 -0.39 1.26 16 12 C 0.18 4.22 4.82 -2.81 -0.01 4.20 16 13 N -0.60 -14.66 3.39 -169.70 -0.58 -15.24 16 14 C -0.23 -6.24 10.28 -15.06 -0.15 -6.40 16 15 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 16 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 17 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 18 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.14 2.77 6.14 -2.53 -0.02 2.75 16 23 C -0.09 -1.40 0.83 -152.36 -0.13 -1.52 16 24 C -0.13 -1.90 8.57 37.16 0.32 -1.58 16 25 C -0.13 -1.58 8.22 37.16 0.31 -1.28 16 26 C -0.05 -0.73 6.22 -27.78 -0.17 -0.90 16 27 C -0.12 -1.30 5.88 -26.46 -0.16 -1.46 16 28 C -0.12 -1.14 5.85 -26.51 -0.16 -1.29 16 29 C -0.03 -0.30 6.32 -27.59 -0.17 -0.47 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.89 7.67 -51.93 -0.40 0.50 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.40 5.98 7.00 -40.82 -0.29 5.69 16 34 H 0.05 1.41 7.41 -51.93 -0.38 1.03 16 35 H 0.06 1.50 7.39 -51.93 -0.38 1.11 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 38 H 0.01 0.28 7.98 -51.93 -0.41 -0.14 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 42 H 0.05 0.58 6.43 -51.93 -0.33 0.24 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 51 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 52 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 408.21 15.07 6.15 6.15 Total: -1.00 -33.25 408.21 -9.54 -42.79 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.89 Total: 4.54 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.79 Total: 1.95 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.08 Total: -61.29 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.25 -9.54 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974625239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.758 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds