Wall clock time and date at job start Wed Apr 1 2020 04:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28831 * 125.15097 * 2 1 4 4 C 1.30105 * 110.77874 * 179.97438 * 3 2 1 5 5 C 1.40091 * 107.72876 * 0.10174 * 4 3 2 6 6 C 1.37003 * 125.15101 * 179.97438 * 2 1 3 7 7 C 1.47164 * 127.04265 * 0.03708 * 6 2 1 8 8 O 1.21620 * 119.99998 * 267.12318 * 7 6 2 9 9 N 1.34782 * 119.99727 * 87.13162 * 7 6 2 10 10 C 1.46493 * 119.99763 * 185.30491 * 9 7 6 11 11 H 1.08998 * 110.64154 * 34.29616 * 10 9 7 12 12 C 1.54326 * 110.72143 * 271.15574 * 10 9 7 13 13 N 1.47482 * 107.03384 * 263.78966 * 12 10 9 14 14 C 1.36941 * 125.58947 * 181.00202 * 13 12 10 15 15 H 1.08007 * 119.99833 * 180.02562 * 14 13 12 16 16 C 1.38805 * 120.00392 * 0.02822 * 14 13 12 17 17 N 1.31625 * 119.99850 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00177 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47301 * 119.99760 * 18 16 14 21 21 H 1.48504 * 109.46778 * 239.99374 * 18 16 14 22 22 C 1.47429 * 108.76139 * 1.02531 * 13 12 10 23 23 C 1.54910 * 104.82853 * 335.89077 * 22 13 12 24 24 C 1.53000 * 111.00552 * 278.93486 * 23 22 13 25 25 C 1.52997 * 111.00156 * 155.08602 * 23 22 13 26 26 C 1.50389 * 124.19899 * 179.83447 * 5 4 3 27 27 C 1.53498 * 108.12488 * 343.68548 * 26 5 4 28 28 C 1.53027 * 109.70098 * 50.03126 * 27 26 5 29 29 C 1.50867 * 129.05310 * 180.13914 * 4 3 2 30 30 H 1.09001 * 109.47244 * 85.26098 * 1 2 3 31 31 H 1.08997 * 109.47254 * 205.25858 * 1 2 3 32 32 H 1.09000 * 109.47316 * 325.25977 * 1 2 3 33 33 H 0.96998 * 119.99977 * 5.30423 * 9 7 6 34 34 H 1.09002 * 109.88328 * 23.24829 * 12 10 9 35 35 H 1.09000 * 109.88447 * 144.40978 * 12 10 9 36 36 H 0.96996 * 119.99786 * 180.02562 * 17 16 14 37 37 H 1.08997 * 110.36469 * 217.05911 * 22 13 12 38 38 H 1.08990 * 110.45693 * 94.77815 * 22 13 12 39 39 H 1.08997 * 109.46835 * 172.19617 * 24 23 22 40 40 H 1.09000 * 109.47336 * 292.19707 * 24 23 22 41 41 H 1.09004 * 109.46696 * 52.19859 * 24 23 22 42 42 H 1.08999 * 109.46842 * 307.80179 * 25 23 22 43 43 H 1.08996 * 109.47254 * 67.80210 * 25 23 22 44 44 H 1.08999 * 109.46977 * 187.80634 * 25 23 22 45 45 H 1.09007 * 109.72789 * 224.03037 * 26 5 4 46 46 H 1.09001 * 109.77218 * 103.36811 * 26 5 4 47 47 H 1.08997 * 109.43347 * 289.95518 * 27 26 5 48 48 H 1.09002 * 109.42872 * 170.09916 * 27 26 5 49 49 H 1.08992 * 109.40198 * 168.46847 * 28 27 26 50 50 H 1.08997 * 109.33247 * 48.67596 * 28 27 26 51 51 H 1.09000 * 109.72457 * 43.42380 * 29 4 3 52 52 H 1.09000 * 109.72129 * 282.76220 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2067 1.0534 0.0000 4 6 3.4670 0.7304 0.0005 5 6 3.5490 -0.6681 -0.0014 6 6 2.2537 -1.1202 0.0005 7 6 1.8037 -2.5213 0.0004 8 8 1.6675 -3.1164 1.0523 9 7 1.5426 -3.1451 -1.1655 10 6 0.9844 -4.4995 -1.1626 11 1 0.3097 -4.6352 -0.3173 12 6 2.1107 -5.5543 -1.1369 13 7 2.3427 -5.9726 -2.5320 14 6 3.2511 -6.9119 -2.9418 15 1 3.3465 -7.1491 -3.9911 16 6 4.0491 -7.5592 -2.0086 17 7 3.9332 -7.2698 -0.7298 18 14 5.2886 -8.8400 -2.5677 19 1 5.2236 -8.9802 -4.0446 20 1 6.6544 -8.4137 -2.1702 21 1 4.9729 -10.1447 -1.9326 22 6 1.4363 -5.2126 -3.4119 23 6 0.2555 -4.7958 -2.4998 24 6 -0.7435 -5.9432 -2.3374 25 6 -0.4361 -3.5413 -3.0371 26 6 4.8402 -1.4391 -0.0051 27 6 5.9672 -0.4813 -0.4160 28 6 5.8934 0.7938 0.4269 29 6 4.6786 1.6294 0.0036 30 1 -0.3634 0.0849 -1.0241 31 1 -0.3633 -0.9294 0.4385 32 1 -0.3634 0.8445 0.5856 33 1 1.7244 -2.6972 -2.0065 34 1 3.0189 -5.1168 -0.7223 35 1 1.8026 -6.4111 -0.5377 36 1 4.4911 -7.7219 -0.0778 37 1 1.0816 -5.8435 -4.2270 38 1 1.9400 -4.3306 -3.8073 39 1 -1.4865 -5.6743 -1.5866 40 1 -1.2403 -6.1299 -3.2895 41 1 -0.2155 -6.8425 -2.0205 42 1 0.3068 -2.7624 -3.2091 43 1 -0.9390 -3.7771 -3.9749 44 1 -1.1686 -3.1907 -2.3101 45 1 4.7765 -2.2602 -0.7192 46 1 5.0373 -1.8330 0.9919 47 1 5.8597 -0.2259 -1.4702 48 1 6.9306 -0.9657 -0.2573 49 1 6.8026 1.3771 0.2813 50 1 5.7997 0.5258 1.4792 51 1 4.5293 2.4456 0.7105 52 1 4.8399 2.0327 -0.9961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974625239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:19 Heat of formation + Delta-G solvation = 35.928180 kcal Electronic energy + Delta-G solvation = -32412.052645 eV Core-core repulsion = 28412.482490 eV Total energy + Delta-G solvation = -3999.570155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.70132 -41.21357 -39.41110 -37.98563 -35.73853 -34.64557 -33.70693 -32.92293 -32.60586 -30.54135 -29.58424 -28.27729 -27.99633 -27.42090 -25.53460 -24.45134 -23.84106 -22.98016 -22.03760 -21.08764 -20.22202 -19.96734 -18.71273 -18.66080 -17.71924 -17.11766 -16.86778 -16.74735 -16.03883 -15.87147 -15.60854 -15.44668 -15.36696 -14.85570 -14.79707 -14.70793 -14.22695 -13.97885 -13.84829 -13.82782 -13.68753 -13.46902 -13.43670 -13.16223 -12.97849 -12.87453 -12.73044 -12.71802 -12.61133 -12.28142 -12.08358 -11.90415 -11.80298 -11.74538 -11.67658 -11.57875 -11.36968 -11.29518 -11.19735 -10.76193 -10.16963 -10.07181 -9.61405 -8.89707 -7.83628 -5.20135 0.57173 0.99870 1.44341 1.45046 1.55039 1.55457 1.62198 2.14821 2.48931 3.26572 3.35169 3.40515 3.51648 3.70050 3.89457 3.93374 4.00350 4.03108 4.06097 4.10514 4.27112 4.31949 4.35695 4.47265 4.51630 4.53876 4.59485 4.62131 4.65186 4.68175 4.83033 4.85789 4.93003 4.97488 5.00486 5.03343 5.09283 5.14824 5.16718 5.21159 5.23271 5.29701 5.33265 5.45797 5.46773 5.54533 5.54951 5.64500 5.72962 5.78708 6.16945 6.32180 6.95918 7.01097 7.08294 7.77126 8.41388 9.25938 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010279 B = 0.003975 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.235322 B = 7043.116792 C = 8960.703124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.281 5.281 3 N -0.284 5.284 4 C 0.029 3.971 5 C -0.168 4.168 6 C -0.036 4.036 7 C 0.597 3.403 8 O -0.564 6.564 9 N -0.680 5.680 10 C 0.136 3.864 11 H 0.085 0.915 12 C 0.193 3.807 13 N -0.620 5.620 14 C -0.235 4.235 15 H 0.086 0.914 16 C -0.067 4.067 17 N -0.953 5.953 18 Si 0.974 3.026 19 H -0.261 1.261 20 H -0.296 1.296 21 H -0.295 1.295 22 C 0.138 3.862 23 C -0.072 4.072 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.052 4.052 27 C -0.110 4.110 28 C -0.111 4.111 29 C -0.028 4.028 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.409 0.591 34 H 0.001 0.999 35 H 0.009 0.991 36 H 0.243 0.757 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.057 0.943 51 H 0.093 0.907 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 19.373 -3.276 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.070 5.070 3 N -0.114 5.114 4 C -0.131 4.131 5 C -0.179 4.179 6 C -0.163 4.163 7 C 0.381 3.619 8 O -0.442 6.442 9 N -0.331 5.331 10 C 0.031 3.969 11 H 0.103 0.897 12 C 0.067 3.933 13 N -0.346 5.346 14 C -0.364 4.364 15 H 0.104 0.896 16 C -0.259 4.259 17 N -0.602 5.602 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.223 1.223 21 H -0.222 1.222 22 C 0.013 3.987 23 C -0.073 4.073 24 C -0.181 4.181 25 C -0.182 4.182 26 C -0.090 4.090 27 C -0.148 4.148 28 C -0.149 4.149 29 C -0.066 4.066 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.246 0.754 34 H 0.019 0.981 35 H 0.027 0.973 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.120 0.880 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.528 19.710 -2.484 21.245 hybrid contribution 1.458 -2.021 0.068 2.493 sum -6.070 17.689 -2.416 18.857 Atomic orbital electron populations 1.22462 0.71083 1.05916 1.06330 1.45969 1.08247 1.00441 1.52294 1.72754 1.03949 1.13229 1.21507 1.22392 0.92816 0.92987 1.04868 1.20589 0.93212 0.95228 1.08848 1.20814 0.92555 0.88609 1.14317 1.17150 0.76409 0.84400 0.83989 1.90831 1.52787 1.67571 1.32990 1.45835 1.62930 1.16436 1.07888 1.22249 0.94894 0.80549 0.99249 0.89698 1.21154 0.93429 0.92815 0.85894 1.44788 1.42615 1.44779 1.02454 1.19496 1.11422 1.12529 0.93001 0.89581 1.25626 1.02245 1.02572 0.95498 1.70228 1.43079 1.45982 1.00915 0.85064 0.78267 0.78320 0.78044 1.18551 1.22320 1.22215 1.21885 0.89414 0.94314 0.93110 1.21988 0.94901 0.97866 0.92570 1.21593 0.97373 0.96270 1.02840 1.21661 1.00087 0.94416 1.02021 1.20022 0.91050 0.97011 1.00920 1.21560 0.97028 0.95546 1.00622 1.21573 0.98175 0.95649 0.99489 1.20165 0.87241 0.95448 1.03777 0.87199 0.89286 0.86740 0.75362 0.98081 0.97251 0.94752 0.93215 0.95609 0.91242 0.90195 0.95083 0.92483 0.90158 0.91009 0.93138 0.92114 0.91064 0.90421 0.88047 0.92386 0.88897 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.39 11.22 127.77 1.43 2.82 16 2 N -0.28 -7.48 3.77 -356.73 -1.34 -8.83 16 3 N -0.28 -7.76 11.89 -47.46 -0.56 -8.32 16 4 C 0.03 0.78 7.13 43.32 0.31 1.09 16 5 C -0.17 -5.26 6.02 -19.76 -0.12 -5.38 16 6 C -0.04 -1.15 6.70 40.44 0.27 -0.88 16 7 C 0.60 22.03 6.95 86.59 0.60 22.63 16 8 O -0.56 -25.80 16.85 -4.09 -0.07 -25.87 16 9 N -0.68 -22.76 4.50 -440.44 -1.98 -24.74 16 10 C 0.14 5.10 2.50 46.18 0.12 5.21 16 11 H 0.09 3.28 7.61 -2.39 -0.02 3.26 16 12 C 0.19 9.89 4.82 86.64 0.42 10.31 16 13 N -0.62 -31.16 3.39 -690.81 -2.34 -33.50 16 14 C -0.24 -13.10 10.28 84.03 0.86 -12.24 16 15 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 16 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 17 N -0.95 -59.68 10.31 21.65 0.22 -59.45 16 18 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 22 C 0.14 5.15 6.14 86.85 0.53 5.68 16 23 C -0.07 -2.15 0.83 -50.79 -0.04 -2.19 16 24 C -0.12 -3.53 8.57 71.98 0.62 -2.92 16 25 C -0.12 -2.49 8.22 71.98 0.59 -1.90 16 26 C -0.05 -1.60 6.22 29.92 0.19 -1.41 16 27 C -0.11 -2.42 5.88 30.77 0.18 -2.24 16 28 C -0.11 -1.93 5.85 30.74 0.18 -1.75 16 29 C -0.03 -0.51 6.32 30.04 0.19 -0.32 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.60 7.67 -2.39 -0.02 1.58 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.41 11.97 7.00 -92.71 -0.65 11.32 16 34 H 0.00 0.06 7.41 -2.39 -0.02 0.04 16 35 H 0.01 0.55 7.39 -2.39 -0.02 0.54 16 36 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 38 H 0.03 0.93 7.98 -2.39 -0.02 0.91 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.03 1.13 7.91 -2.39 -0.02 1.11 16 42 H 0.06 1.09 6.43 -2.39 -0.02 1.07 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 48 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 51 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -78.75 408.21 3.00 -75.75 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.26 Total: 23.23 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 6.79 Total: 13.11 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -6.01 Total: -134.85 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.07 Total: -25.87 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -78.75 3.00 -75.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974625239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.677 kcal (2) G-P(sol) polarization free energy of solvation -78.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds