Wall clock time and date at job start Wed Apr 1 2020 04:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.77701 * 2 1 4 4 C 1.54319 * 110.71746 * 123.24010 * 2 1 3 5 5 N 1.47020 * 107.40432 * 96.25039 * 4 2 1 6 6 C 1.36934 * 125.65354 * 178.89643 * 5 4 2 7 7 H 1.08002 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.38817 * 120.00204 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00041 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99781 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46964 * 89.99976 * 10 8 6 12 12 H 1.48502 * 109.47064 * 210.00088 * 10 8 6 13 13 H 1.48501 * 109.47400 * 330.00135 * 10 8 6 14 14 C 1.47433 * 108.70039 * 358.85911 * 5 4 2 15 15 C 1.54903 * 104.83374 * 24.13048 * 14 5 4 16 16 H 1.08998 * 111.00552 * 204.91783 * 15 14 5 17 17 N 1.46498 * 111.00714 * 81.10118 * 15 14 5 18 18 C 1.34772 * 119.99791 * 86.45342 * 17 15 14 19 19 O 1.21628 * 120.00381 * 354.93906 * 18 17 15 20 20 C 1.47162 * 120.00077 * 174.94231 * 18 17 15 21 21 C 1.38401 * 126.88488 * 5.49565 * 20 18 17 22 22 C 1.39678 * 105.36350 * 179.97438 * 21 20 18 23 23 N 1.30870 * 107.85701 * 0.35216 * 22 21 20 24 24 N 1.28439 * 110.92784 * 359.77690 * 23 22 21 25 25 C 1.46494 * 125.19185 * 179.97438 * 24 23 22 26 26 C 1.54266 * 110.03569 * 62.49021 * 25 24 23 27 27 C 1.54892 * 104.19902 * 217.10962 * 26 25 24 28 28 C 1.54887 * 102.74761 * 37.93865 * 27 26 25 29 29 C 1.53880 * 110.03070 * 305.32500 * 25 24 23 30 30 H 1.09002 * 109.47183 * 298.20952 * 1 2 3 31 31 H 1.08996 * 109.47304 * 58.21382 * 1 2 3 32 32 H 1.08998 * 109.46983 * 178.21648 * 1 2 3 33 33 H 1.09000 * 109.46729 * 181.78857 * 3 2 1 34 34 H 1.08993 * 109.47276 * 301.78667 * 3 2 1 35 35 H 1.09002 * 109.47065 * 61.78724 * 3 2 1 36 36 H 1.09001 * 109.88861 * 336.75016 * 4 2 1 37 37 H 1.09007 * 109.88390 * 215.74044 * 4 2 1 38 38 H 0.96999 * 120.00038 * 180.02562 * 9 8 6 39 39 H 1.08995 * 110.36564 * 142.97170 * 14 5 4 40 40 H 1.09003 * 110.36071 * 265.18155 * 14 5 4 41 41 H 0.97001 * 120.00069 * 266.46000 * 17 15 14 42 42 H 1.08007 * 127.31974 * 359.97438 * 21 20 18 43 43 H 1.07995 * 126.07077 * 180.14781 * 22 21 20 44 44 H 1.08997 * 110.02327 * 183.93636 * 25 24 23 45 45 H 1.09005 * 110.48471 * 335.78696 * 26 25 24 46 46 H 1.08994 * 110.48882 * 98.42503 * 26 25 24 47 47 H 1.08995 * 110.75225 * 279.62664 * 27 26 25 48 48 H 1.09000 * 110.75630 * 156.25495 * 27 26 25 49 49 H 1.08999 * 110.48802 * 203.37591 * 28 27 26 50 50 H 1.09006 * 110.59879 * 80.79262 * 28 27 26 51 51 H 1.09002 * 110.03286 * 238.56773 * 29 25 24 52 52 H 1.08996 * 110.03104 * 359.94916 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 2.3744 -2.1534 0.7416 6 6 2.8980 -3.1615 1.5063 7 1 3.1277 -2.9863 2.5470 8 6 3.1335 -4.4086 0.9440 9 7 2.8540 -4.6220 -0.3243 10 14 3.8484 -5.7835 1.9870 11 1 2.7448 -6.5516 2.6174 12 1 4.6540 -6.6886 1.1284 13 1 4.7147 -5.2035 3.0445 14 6 2.0157 -2.2546 -0.6848 15 6 2.0792 -0.8001 -1.2138 16 1 1.4396 -0.6738 -2.0874 17 7 3.4588 -0.4109 -1.5160 18 6 3.9879 -0.6879 -2.7241 19 8 3.3537 -1.3412 -3.5305 20 6 5.3331 -0.2001 -3.0677 21 6 6.2167 0.4587 -2.2307 22 6 7.3472 0.7115 -3.0111 23 7 7.1213 0.2379 -4.2100 24 7 5.9571 -0.3002 -4.2788 25 6 5.3853 -0.9255 -5.4739 26 6 6.2388 -2.1395 -5.8949 27 6 6.2167 -2.1009 -7.4432 28 6 6.2877 -0.5840 -7.7483 29 6 5.4163 0.0636 -6.6523 30 1 -0.3634 0.4858 0.9056 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1620 1.4058 -0.0321 34 1 1.6956 1.9622 -0.8735 35 1 1.7474 1.9425 0.9056 36 1 1.3263 -0.8255 1.9978 37 1 2.9854 -0.3191 1.5793 38 1 3.0182 -5.4936 -0.7172 39 1 2.7337 -2.8820 -1.2129 40 1 1.0085 -2.6566 -0.7950 41 1 3.9915 0.0461 -0.8464 42 1 6.0645 0.7215 -1.1942 43 1 8.2466 1.2121 -2.6842 44 1 4.3602 -1.2392 -5.2768 45 1 7.2590 -2.0352 -5.5253 46 1 5.7926 -3.0646 -5.5300 47 1 5.2908 -2.5291 -7.8270 48 1 7.0829 -2.6187 -7.8550 49 1 5.8772 -0.3739 -8.7359 50 1 7.3152 -0.2267 -7.6794 51 1 4.4064 0.2291 -7.0276 52 1 5.8560 1.0090 -6.3348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974630171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:30 Heat of formation + Delta-G solvation = 62.812550 kcal Electronic energy + Delta-G solvation = -32226.292692 eV Core-core repulsion = 28227.888330 eV Total energy + Delta-G solvation = -3998.404361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.45373 -39.59211 -38.00421 -37.76165 -33.91730 -33.22972 -32.13405 -30.81578 -30.62204 -28.90744 -28.09572 -27.64270 -26.82068 -25.62157 -23.91175 -22.62797 -22.14976 -20.90529 -20.76929 -19.90324 -19.51597 -18.58572 -17.59499 -16.73349 -16.16792 -15.82466 -15.69666 -15.55111 -14.82009 -14.47619 -14.27366 -14.04753 -13.89436 -13.77075 -13.66814 -13.48211 -13.21001 -13.08039 -12.63369 -12.20627 -11.96201 -11.91554 -11.80609 -11.68459 -11.34129 -11.33335 -11.25228 -11.18861 -11.03136 -11.02095 -10.78797 -10.76425 -10.61249 -10.42154 -10.21290 -9.97840 -9.83059 -9.69695 -9.52997 -9.04800 -8.87886 -8.68458 -8.39970 -6.81428 -5.62831 -3.05780 1.49413 2.50074 2.74842 3.40209 3.45048 3.47497 3.51685 3.60728 4.31348 4.40921 4.48959 4.75088 4.81449 4.87666 4.94864 5.21045 5.21694 5.25752 5.27038 5.30019 5.35218 5.42469 5.48902 5.52338 5.59832 5.69008 5.70609 5.73453 5.75392 5.84896 5.85449 5.87842 6.00026 6.03323 6.06791 6.10736 6.14914 6.19551 6.23508 6.36890 6.46856 6.56946 6.61353 6.67741 6.71857 6.91538 6.94293 7.46086 7.62373 7.82476 7.94076 8.22453 8.39590 8.55124 9.22184 9.83956 10.47547 11.39803 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.003676 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.738223 B = 7616.054399 C = 8853.359830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.132 4.132 4 C 0.142 3.858 5 N -0.600 5.600 6 C -0.226 4.226 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.146 3.854 15 C 0.126 3.874 16 H 0.086 0.914 17 N -0.683 5.683 18 C 0.589 3.411 19 O -0.541 6.541 20 C -0.026 4.026 21 C -0.194 4.194 22 C -0.009 4.009 23 N -0.280 5.280 24 N -0.248 5.248 25 C 0.130 3.870 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.129 4.129 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.022 0.978 38 H 0.252 0.748 39 H 0.115 0.885 40 H 0.021 0.979 41 H 0.399 0.601 42 H 0.157 0.843 43 H 0.182 0.818 44 H 0.140 0.860 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 13.241 -9.610 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.021 3.979 15 C 0.021 3.979 16 H 0.104 0.896 17 N -0.333 5.333 18 C 0.374 3.626 19 O -0.420 6.420 20 C -0.155 4.155 21 C -0.223 4.223 22 C -0.185 4.185 23 N -0.113 5.113 24 N -0.036 5.036 25 C 0.030 3.970 26 C -0.169 4.169 27 C -0.159 4.159 28 C -0.157 4.157 29 C -0.167 4.167 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.133 0.867 40 H 0.039 0.961 41 H 0.235 0.765 42 H 0.175 0.825 43 H 0.199 0.801 44 H 0.158 0.842 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.095 0.905 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.088 12.375 -11.372 17.297 hybrid contribution 0.332 -0.473 1.942 2.026 sum 4.421 11.902 -9.430 15.815 Atomic orbital electron populations 1.21687 0.93425 1.02521 1.00963 1.21883 0.96076 0.94535 0.96256 1.21728 1.00418 0.95386 1.01436 1.21410 0.96509 0.86833 0.93613 1.44447 1.74160 1.06714 1.07332 1.19018 1.34230 0.89284 0.92846 0.90567 1.24779 1.01668 0.97612 0.96312 1.69795 1.53616 1.22182 1.10830 0.86129 0.78585 0.82123 0.78978 1.21651 1.21741 1.20734 1.22312 1.00246 0.90276 0.85107 1.22615 0.80419 0.98494 0.96355 0.89608 1.45504 1.15117 1.59100 1.13600 1.16812 0.83391 0.79634 0.82792 1.90712 1.62036 1.39439 1.49786 1.21570 0.97314 1.08234 0.88353 1.22222 0.94463 1.04881 1.00731 1.23484 1.00355 1.04854 0.89768 1.73062 1.01234 1.13454 1.23530 1.45891 1.09541 1.39156 1.08989 1.22848 1.00258 0.92717 0.81212 1.22727 1.00627 0.97146 0.96383 1.22463 1.02323 0.96398 0.94690 1.22322 1.00224 0.95251 0.97933 1.22470 1.01112 0.98708 0.94446 0.92575 0.93083 0.91713 0.92904 0.92765 0.92544 0.95812 0.96041 0.93717 0.86728 0.96093 0.76475 0.82547 0.80062 0.84206 0.90295 0.90264 0.90896 0.90971 0.91345 0.91169 0.90497 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.44 37.16 0.31 -1.55 16 2 C -0.09 -1.38 0.81 -152.54 -0.12 -1.50 16 3 C -0.13 -1.66 8.17 37.16 0.30 -1.36 16 4 C 0.14 2.78 6.40 -3.07 -0.02 2.76 16 5 N -0.60 -14.75 3.39 -170.07 -0.58 -15.33 16 6 C -0.23 -6.17 10.27 -15.06 -0.15 -6.33 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.03 10.09 55.49 0.56 -26.47 16 10 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.15 3.52 5.27 -2.53 -0.01 3.51 16 15 C 0.13 2.36 2.53 -65.65 -0.17 2.19 16 16 H 0.09 1.60 7.71 -51.93 -0.40 1.20 16 17 N -0.68 -11.88 4.67 -52.76 -0.25 -12.13 16 18 C 0.59 10.89 7.79 -12.64 -0.10 10.79 16 19 O -0.54 -11.35 14.21 5.25 0.07 -11.28 16 20 C -0.03 -0.43 6.96 -82.06 -0.57 -1.00 16 21 C -0.19 -2.69 10.50 -38.98 -0.41 -3.10 16 22 C -0.01 -0.12 12.03 -17.42 -0.21 -0.33 16 23 N -0.28 -4.14 11.04 30.59 0.34 -3.80 16 24 N -0.25 -3.84 3.06 -49.61 -0.15 -4.00 16 25 C 0.13 1.82 3.58 -66.81 -0.24 1.58 16 26 C -0.13 -1.68 6.51 -25.07 -0.16 -1.84 16 27 C -0.12 -1.19 6.91 -24.74 -0.17 -1.36 16 28 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 29 C -0.13 -1.46 6.47 -25.61 -0.17 -1.63 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.07 7.46 -51.93 -0.39 0.68 16 33 H 0.05 0.64 6.21 -51.93 -0.32 0.31 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 37 H 0.02 0.41 7.82 -51.92 -0.41 0.00 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.12 3.25 5.87 -51.93 -0.31 2.94 16 40 H 0.02 0.55 7.73 -51.93 -0.40 0.15 16 41 H 0.40 6.23 5.85 -40.82 -0.24 5.99 16 42 H 0.16 1.80 7.59 -52.48 -0.40 1.40 16 43 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.14 2.23 5.41 -51.93 -0.28 1.95 16 45 H 0.08 1.08 7.77 -51.93 -0.40 0.68 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.08 0.92 7.62 -51.93 -0.40 0.53 16 LS Contribution 402.80 15.07 6.07 6.07 Total: -1.00 -32.00 402.80 -9.66 -41.65 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -8.54 Total: 8.85 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.15 Total: -0.77 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.08 Total: -61.72 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.28 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.00 -9.66 -41.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974630171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.464 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds