Wall clock time and date at job start Wed Apr 1 2020 04:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.77701 * 2 1 4 4 C 1.54319 * 110.71746 * 123.24010 * 2 1 3 5 5 N 1.47020 * 107.40432 * 96.25039 * 4 2 1 6 6 C 1.36934 * 125.65354 * 178.89643 * 5 4 2 7 7 H 1.08002 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.38817 * 120.00204 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00041 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99781 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46964 * 89.99976 * 10 8 6 12 12 H 1.48502 * 109.47064 * 210.00088 * 10 8 6 13 13 H 1.48501 * 109.47400 * 330.00135 * 10 8 6 14 14 C 1.47433 * 108.70039 * 358.85911 * 5 4 2 15 15 C 1.54903 * 104.83374 * 24.13048 * 14 5 4 16 16 H 1.08998 * 111.00552 * 204.91783 * 15 14 5 17 17 N 1.46498 * 111.00714 * 81.10118 * 15 14 5 18 18 C 1.34772 * 119.99791 * 86.45342 * 17 15 14 19 19 O 1.21628 * 120.00381 * 354.93906 * 18 17 15 20 20 C 1.47162 * 120.00077 * 174.94231 * 18 17 15 21 21 C 1.38401 * 126.88488 * 5.49565 * 20 18 17 22 22 C 1.39678 * 105.36350 * 179.97438 * 21 20 18 23 23 N 1.30870 * 107.85701 * 0.35216 * 22 21 20 24 24 N 1.28439 * 110.92784 * 359.77690 * 23 22 21 25 25 C 1.46494 * 125.19185 * 179.97438 * 24 23 22 26 26 C 1.54266 * 110.03569 * 62.49021 * 25 24 23 27 27 C 1.54892 * 104.19902 * 217.10962 * 26 25 24 28 28 C 1.54887 * 102.74761 * 37.93865 * 27 26 25 29 29 C 1.53880 * 110.03070 * 305.32500 * 25 24 23 30 30 H 1.09002 * 109.47183 * 298.20952 * 1 2 3 31 31 H 1.08996 * 109.47304 * 58.21382 * 1 2 3 32 32 H 1.08998 * 109.46983 * 178.21648 * 1 2 3 33 33 H 1.09000 * 109.46729 * 181.78857 * 3 2 1 34 34 H 1.08993 * 109.47276 * 301.78667 * 3 2 1 35 35 H 1.09002 * 109.47065 * 61.78724 * 3 2 1 36 36 H 1.09001 * 109.88861 * 336.75016 * 4 2 1 37 37 H 1.09007 * 109.88390 * 215.74044 * 4 2 1 38 38 H 0.96999 * 120.00038 * 180.02562 * 9 8 6 39 39 H 1.08995 * 110.36564 * 142.97170 * 14 5 4 40 40 H 1.09003 * 110.36071 * 265.18155 * 14 5 4 41 41 H 0.97001 * 120.00069 * 266.46000 * 17 15 14 42 42 H 1.08007 * 127.31974 * 359.97438 * 21 20 18 43 43 H 1.07995 * 126.07077 * 180.14781 * 22 21 20 44 44 H 1.08997 * 110.02327 * 183.93636 * 25 24 23 45 45 H 1.09005 * 110.48471 * 335.78696 * 26 25 24 46 46 H 1.08994 * 110.48882 * 98.42503 * 26 25 24 47 47 H 1.08995 * 110.75225 * 279.62664 * 27 26 25 48 48 H 1.09000 * 110.75630 * 156.25495 * 27 26 25 49 49 H 1.08999 * 110.48802 * 203.37591 * 28 27 26 50 50 H 1.09006 * 110.59879 * 80.79262 * 28 27 26 51 51 H 1.09002 * 110.03286 * 238.56773 * 29 25 24 52 52 H 1.08996 * 110.03104 * 359.94916 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 2.3744 -2.1534 0.7416 6 6 2.8980 -3.1615 1.5063 7 1 3.1277 -2.9863 2.5470 8 6 3.1335 -4.4086 0.9440 9 7 2.8540 -4.6220 -0.3243 10 14 3.8484 -5.7835 1.9870 11 1 2.7448 -6.5516 2.6174 12 1 4.6540 -6.6886 1.1284 13 1 4.7147 -5.2035 3.0445 14 6 2.0157 -2.2546 -0.6848 15 6 2.0792 -0.8001 -1.2138 16 1 1.4396 -0.6738 -2.0874 17 7 3.4588 -0.4109 -1.5160 18 6 3.9879 -0.6879 -2.7241 19 8 3.3537 -1.3412 -3.5305 20 6 5.3331 -0.2001 -3.0677 21 6 6.2167 0.4587 -2.2307 22 6 7.3472 0.7115 -3.0111 23 7 7.1213 0.2379 -4.2100 24 7 5.9571 -0.3002 -4.2788 25 6 5.3853 -0.9255 -5.4739 26 6 6.2388 -2.1395 -5.8949 27 6 6.2167 -2.1009 -7.4432 28 6 6.2877 -0.5840 -7.7483 29 6 5.4163 0.0636 -6.6523 30 1 -0.3634 0.4858 0.9056 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1620 1.4058 -0.0321 34 1 1.6956 1.9622 -0.8735 35 1 1.7474 1.9425 0.9056 36 1 1.3263 -0.8255 1.9978 37 1 2.9854 -0.3191 1.5793 38 1 3.0182 -5.4936 -0.7172 39 1 2.7337 -2.8820 -1.2129 40 1 1.0085 -2.6566 -0.7950 41 1 3.9915 0.0461 -0.8464 42 1 6.0645 0.7215 -1.1942 43 1 8.2466 1.2121 -2.6842 44 1 4.3602 -1.2392 -5.2768 45 1 7.2590 -2.0352 -5.5253 46 1 5.7926 -3.0646 -5.5300 47 1 5.2908 -2.5291 -7.8270 48 1 7.0829 -2.6187 -7.8550 49 1 5.8772 -0.3739 -8.7359 50 1 7.3152 -0.2267 -7.6794 51 1 4.4064 0.2291 -7.0276 52 1 5.8560 1.0090 -6.3348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974630171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:29 Heat of formation + Delta-G solvation = 43.740426 kcal Electronic energy + Delta-G solvation = -32227.119721 eV Core-core repulsion = 28227.888330 eV Total energy + Delta-G solvation = -3999.231391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.58633 -41.09432 -39.31012 -38.93117 -35.72315 -34.70829 -33.19914 -32.60577 -31.96684 -29.83658 -29.70090 -28.62912 -28.02381 -27.40189 -25.48342 -24.08189 -23.20273 -22.31837 -21.71914 -21.42965 -20.83473 -19.86758 -18.84084 -18.70095 -17.48142 -17.21377 -16.84304 -16.72083 -16.51056 -15.80391 -15.71607 -15.44234 -15.27915 -15.24081 -14.76322 -14.63913 -14.40686 -14.25477 -14.00109 -13.72696 -13.65609 -13.07864 -13.02039 -12.91948 -12.86000 -12.66963 -12.64129 -12.56122 -12.18731 -12.14046 -12.12032 -12.07627 -11.77820 -11.77526 -11.72144 -11.55971 -11.44286 -11.35599 -10.97805 -10.75117 -10.30155 -9.99917 -9.90834 -8.84192 -7.75609 -5.20186 0.24539 1.35939 1.43449 1.45019 1.53554 1.67881 2.14966 2.26090 2.48315 3.33140 3.34185 3.47196 3.53006 3.59434 3.70709 3.80099 3.91432 3.97027 4.07555 4.15397 4.28570 4.36387 4.37764 4.40613 4.46218 4.51232 4.61794 4.65516 4.73115 4.74596 4.83601 4.86815 4.89578 4.92121 4.94559 5.03133 5.05807 5.10896 5.11965 5.15671 5.21511 5.29657 5.34801 5.35800 5.48758 5.54239 5.57481 5.66693 5.80676 5.84028 6.32473 6.46818 7.07869 7.10023 7.16165 7.80085 8.43218 9.24648 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.003676 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.738223 B = 7616.054399 C = 8853.359830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.126 4.126 4 C 0.136 3.864 5 N -0.618 5.618 6 C -0.231 4.231 7 H 0.085 0.915 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.974 3.026 11 H -0.288 1.288 12 H -0.301 1.301 13 H -0.265 1.265 14 C 0.155 3.845 15 C 0.139 3.861 16 H 0.083 0.917 17 N -0.675 5.675 18 C 0.584 3.416 19 O -0.577 6.577 20 C -0.061 4.061 21 C -0.181 4.181 22 C -0.006 4.006 23 N -0.288 5.288 24 N -0.255 5.255 25 C 0.121 3.879 26 C -0.130 4.130 27 C -0.114 4.114 28 C -0.111 4.111 29 C -0.122 4.122 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.027 0.973 37 H 0.036 0.964 38 H 0.241 0.759 39 H 0.069 0.931 40 H -0.013 1.013 41 H 0.410 0.590 42 H 0.182 0.818 43 H 0.221 0.779 44 H 0.114 0.886 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.071 0.929 51 H 0.084 0.916 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 16.171 -9.008 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.183 4.183 4 C 0.012 3.988 5 N -0.344 5.344 6 C -0.360 4.360 7 H 0.103 0.897 8 C -0.260 4.260 9 N -0.598 5.598 10 Si 0.803 3.197 11 H -0.215 1.215 12 H -0.228 1.228 13 H -0.190 1.190 14 C 0.028 3.972 15 C 0.033 3.967 16 H 0.101 0.899 17 N -0.325 5.325 18 C 0.371 3.629 19 O -0.458 6.458 20 C -0.189 4.189 21 C -0.210 4.210 22 C -0.181 4.181 23 N -0.121 5.121 24 N -0.043 5.043 25 C 0.021 3.979 26 C -0.169 4.169 27 C -0.152 4.152 28 C -0.149 4.149 29 C -0.161 4.161 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.005 0.995 41 H 0.248 0.752 42 H 0.199 0.801 43 H 0.238 0.762 44 H 0.131 0.869 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.110 0.890 50 H 0.090 0.910 51 H 0.103 0.897 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.387 15.359 -10.728 19.494 hybrid contribution -0.076 -1.379 1.813 2.279 sum 5.311 13.980 -8.915 17.411 Atomic orbital electron populations 1.21698 0.92259 1.01257 1.03216 1.21868 0.96947 0.95933 0.92468 1.21711 1.00766 0.92519 1.03351 1.21668 0.97256 0.84744 0.95169 1.44676 1.73880 1.08334 1.07461 1.19437 1.33031 0.90087 0.93445 0.89741 1.25590 1.02965 1.00099 0.97352 1.70114 1.55343 1.21807 1.12533 0.85138 0.77828 0.79165 0.77607 1.21469 1.22809 1.18951 1.21935 0.96827 0.93172 0.85248 1.22293 0.81471 0.95624 0.97306 0.89863 1.45369 1.14707 1.58780 1.13648 1.17208 0.84147 0.78948 0.82633 1.90697 1.63239 1.40971 1.50872 1.21507 0.97046 1.10531 0.89799 1.22610 0.93807 1.03069 1.01539 1.24164 1.01201 1.03914 0.88789 1.73064 1.00827 1.13560 1.24650 1.46026 1.09770 1.39446 1.09013 1.22898 0.99032 0.93995 0.81965 1.22704 0.99462 0.95838 0.98877 1.22470 1.03401 0.97248 0.92039 1.22306 1.00026 0.94284 0.98257 1.22448 1.02073 0.97659 0.93882 0.90247 0.90900 0.94769 0.92274 0.91286 0.90233 0.95531 0.94585 0.94919 0.91310 0.99543 0.75222 0.80068 0.76240 0.86872 0.91232 0.92329 0.90276 0.89382 0.88995 0.90991 0.89696 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 8.44 71.98 0.61 -2.86 16 2 C -0.07 -2.15 0.81 -50.90 -0.04 -2.19 16 3 C -0.13 -2.68 8.17 71.98 0.59 -2.10 16 4 C 0.14 5.15 6.40 86.73 0.56 5.70 16 5 N -0.62 -30.94 3.39 -691.98 -2.35 -33.29 16 6 C -0.23 -12.82 10.27 84.04 0.86 -11.96 16 7 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 8 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 9 N -0.95 -59.04 10.09 21.65 0.22 -58.82 16 10 Si 0.97 46.73 29.55 68.60 2.03 48.75 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 13 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 14 C 0.15 7.85 5.27 86.85 0.46 8.31 16 15 C 0.14 5.27 2.53 46.47 0.12 5.39 16 16 H 0.08 3.21 7.71 -2.39 -0.02 3.19 16 17 N -0.67 -23.51 4.67 -439.08 -2.05 -25.56 16 18 C 0.58 22.34 7.79 86.59 0.67 23.02 16 19 O -0.58 -25.85 14.21 -4.12 -0.06 -25.91 16 20 C -0.06 -2.00 6.96 40.78 0.28 -1.72 16 21 C -0.18 -4.69 10.50 22.66 0.24 -4.46 16 22 C -0.01 -0.13 12.03 85.18 1.02 0.89 16 23 N -0.29 -8.20 11.04 -57.14 -0.63 -8.83 16 24 N -0.25 -7.96 3.06 -310.88 -0.95 -8.91 16 25 C 0.12 3.54 3.58 45.72 0.16 3.70 16 26 C -0.13 -3.49 6.51 31.67 0.21 -3.28 16 27 C -0.11 -2.16 6.91 31.89 0.22 -1.94 16 28 C -0.11 -1.92 6.83 31.67 0.22 -1.70 16 29 C -0.12 -2.72 6.47 31.32 0.20 -2.52 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.03 1.13 7.46 -2.39 -0.02 1.11 16 33 H 0.06 1.20 6.21 -2.39 -0.01 1.18 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.03 1.00 7.84 -2.39 -0.02 0.99 16 37 H 0.04 1.28 7.82 -2.38 -0.02 1.26 16 38 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.07 4.18 5.87 -2.39 -0.01 4.16 16 40 H -0.01 -0.74 7.73 -2.39 -0.02 -0.76 16 41 H 0.41 12.23 5.85 -92.71 -0.54 11.69 16 42 H 0.18 3.61 7.59 -2.91 -0.02 3.59 16 43 H 0.22 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.11 3.91 5.41 -2.39 -0.01 3.90 16 45 H 0.07 1.96 7.77 -2.38 -0.02 1.94 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 51 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.07 1.63 7.62 -2.39 -0.02 1.62 16 Total: -1.00 -74.91 402.80 3.42 -71.49 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.37 Total: 32.22 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 6.84 Total: 8.86 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -5.76 Total: -135.41 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.06 Total: -25.91 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.91 3.42 -71.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974630171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.230 kcal (2) G-P(sol) polarization free energy of solvation -74.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds