Wall clock time and date at job start Wed Apr 1 2020 04:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.78066 * 2 1 4 4 C 1.54427 * 110.72511 * 236.70140 * 2 1 3 5 5 N 1.47018 * 107.28427 * 263.85044 * 4 2 1 6 6 C 1.36934 * 125.64837 * 181.09953 * 5 4 2 7 7 H 1.07990 * 120.00242 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99853 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00232 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00023 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47257 * 89.99779 * 10 8 6 12 12 H 1.48499 * 109.47100 * 209.99783 * 10 8 6 13 13 H 1.48496 * 109.47010 * 330.00113 * 10 8 6 14 14 C 1.47423 * 108.70120 * 1.05555 * 5 4 2 15 15 C 1.54906 * 104.83420 * 335.87648 * 14 5 4 16 16 H 1.09007 * 111.00601 * 155.11884 * 15 14 5 17 17 N 1.46501 * 111.00255 * 278.93268 * 15 14 5 18 18 C 1.34779 * 119.99630 * 270.41550 * 17 15 14 19 19 O 1.21568 * 120.00555 * 0.02562 * 18 17 15 20 20 C 1.47719 * 119.99531 * 179.97438 * 18 17 15 21 21 C 1.41503 * 126.51480 * 180.02562 * 20 18 17 22 22 C 1.35366 * 105.50235 * 180.02562 * 21 20 18 23 23 N 1.35034 * 107.22683 * 0.02562 * 22 21 20 24 24 C 1.46501 * 124.88533 * 179.97438 * 23 22 21 25 25 C 1.54270 * 110.03162 * 327.09352 * 24 23 22 26 26 C 1.54961 * 104.16191 * 95.75208 * 25 24 23 27 27 C 1.54895 * 102.77671 * 37.88526 * 26 25 24 28 28 C 1.53869 * 110.03042 * 84.30880 * 24 23 22 29 29 N 1.28471 * 110.23221 * 0.22618 * 23 22 21 30 30 H 1.09006 * 109.46998 * 296.76082 * 1 2 3 31 31 H 1.08994 * 109.46825 * 56.76137 * 1 2 3 32 32 H 1.08993 * 109.46973 * 176.76373 * 1 2 3 33 33 H 1.09003 * 109.47552 * 183.23900 * 3 2 1 34 34 H 1.09001 * 109.47183 * 303.23771 * 3 2 1 35 35 H 1.08997 * 109.47709 * 63.23783 * 3 2 1 36 36 H 1.09002 * 109.87593 * 144.42671 * 4 2 1 37 37 H 1.09003 * 110.00528 * 23.34568 * 4 2 1 38 38 H 0.96993 * 120.00257 * 179.97438 * 9 8 6 39 39 H 1.08995 * 110.37065 * 217.03204 * 14 5 4 40 40 H 1.09003 * 110.36648 * 94.71192 * 14 5 4 41 41 H 0.96993 * 119.99831 * 90.42037 * 17 15 14 42 42 H 1.08002 * 127.25378 * 0.02562 * 21 20 18 43 43 H 1.07998 * 126.38387 * 180.02562 * 22 21 20 44 44 H 1.09002 * 110.01794 * 205.69995 * 24 23 22 45 45 H 1.08997 * 110.48585 * 214.40010 * 25 24 23 46 46 H 1.09002 * 110.48442 * 337.03893 * 25 24 23 47 47 H 1.09001 * 110.71970 * 279.57802 * 26 25 24 48 48 H 1.08991 * 110.92569 * 156.29385 * 26 25 24 49 49 H 1.08997 * 110.48689 * 203.40743 * 27 26 25 50 50 H 1.09000 * 110.59637 * 80.82119 * 27 26 25 51 51 H 1.08999 * 110.03405 * 359.95371 * 28 24 23 52 52 H 1.09001 * 110.03705 * 121.33517 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0765 -0.7929 -1.2072 5 7 2.3717 -2.1546 -0.7379 6 6 2.8947 -3.1653 -1.4995 7 1 3.1255 -2.9932 -2.5403 8 6 3.1280 -4.4112 -0.9336 9 7 2.8471 -4.6209 0.3350 10 14 3.8407 -5.7903 -1.9727 11 1 5.3232 -5.7532 -1.8952 12 1 3.3511 -7.0969 -1.4644 13 1 3.4145 -5.6173 -3.3846 14 6 2.0125 -2.2512 0.6886 15 6 2.0790 -0.7954 1.2138 16 1 1.4399 -0.6656 2.0873 17 7 3.4595 -0.4082 1.5144 18 6 3.9681 -0.6262 2.7434 19 8 3.2815 -1.1446 3.6023 20 6 5.3603 -0.2362 3.0463 21 6 6.0308 -0.4001 4.2816 22 6 7.2741 0.0988 4.0874 23 7 7.3356 0.5336 2.8104 24 6 8.5122 1.1476 2.1901 25 6 9.3009 1.9576 3.2398 26 6 10.4029 0.9810 3.7226 27 6 10.7986 0.2405 2.4209 28 6 9.4637 0.0561 1.6699 29 7 6.2122 0.3361 2.2193 30 1 -0.3633 0.4628 0.9177 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 3.1610 1.4062 -0.0581 34 1 1.6751 1.9700 -0.8595 35 1 1.7691 1.9344 0.9175 36 1 2.9875 -0.3228 -1.5777 37 1 1.3289 -0.8279 -1.9997 38 1 3.0098 -5.4916 0.7303 39 1 2.7289 -2.8788 1.2186 40 1 1.0037 -2.6488 0.7997 41 1 4.0074 0.0051 0.8291 42 1 5.6342 -0.8323 5.1885 43 1 8.0686 0.1412 4.8176 44 1 8.2055 1.7973 1.3704 45 1 9.7474 2.8409 2.7833 46 1 8.6522 2.2419 4.0684 47 1 10.0039 0.2825 4.4582 48 1 11.2540 1.5256 4.1311 49 1 11.2428 -0.7275 2.6527 50 1 11.4881 0.8442 1.8308 51 1 9.0505 -0.9305 1.8796 52 1 9.6183 0.1755 0.5975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974636505.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:42 Heat of formation + Delta-G solvation = 64.503251 kcal Electronic energy + Delta-G solvation = -31715.738498 eV Core-core repulsion = 27717.407451 eV Total energy + Delta-G solvation = -3998.331047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.61692 -39.44570 -38.38211 -37.49782 -33.72172 -32.92382 -32.25876 -30.67140 -30.58619 -29.18023 -28.49507 -27.72856 -26.66300 -25.52281 -23.94038 -22.72432 -22.00436 -21.18674 -20.30071 -19.97913 -19.37733 -18.59193 -17.64177 -16.72873 -16.55154 -16.02908 -15.70286 -15.60314 -14.97519 -14.54553 -14.16167 -13.94724 -13.80576 -13.66715 -13.57176 -13.40152 -13.08813 -12.89258 -12.52725 -12.26309 -12.07629 -11.89567 -11.81774 -11.64905 -11.63362 -11.59853 -11.42250 -11.20557 -11.08103 -11.04790 -10.92584 -10.73814 -10.68807 -10.31783 -10.14007 -9.85354 -9.72116 -9.60800 -9.47738 -9.09296 -8.89272 -8.59721 -8.18622 -6.71818 -5.54433 -2.97214 1.87248 2.33612 2.45096 3.44450 3.48892 3.51633 3.75666 3.89095 3.97815 4.06869 4.39939 4.55569 4.68071 4.76442 4.81953 4.94040 4.95149 5.07986 5.10692 5.16076 5.30626 5.34640 5.39345 5.43092 5.53565 5.56974 5.60789 5.67163 5.71950 5.72667 5.83450 5.88494 5.90419 5.94274 5.97943 6.13178 6.19089 6.28348 6.38042 6.48761 6.57200 6.59465 6.71372 6.79139 6.88243 6.88775 7.11893 7.59370 7.70575 7.96196 8.01711 8.29479 8.48862 8.86245 9.30578 9.92286 10.56948 11.48122 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.003449 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.896267 B = 8116.269289 C = 9577.120329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.600 5.600 6 C -0.223 4.223 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.291 1.291 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.146 3.854 15 C 0.124 3.876 16 H 0.087 0.913 17 N -0.687 5.687 18 C 0.601 3.399 19 O -0.539 6.539 20 C -0.005 4.005 21 C -0.180 4.180 22 C -0.024 4.024 23 N -0.278 5.278 24 C 0.144 3.856 25 C -0.134 4.134 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.137 4.137 29 N -0.261 5.261 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.023 0.977 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.021 0.979 41 H 0.402 0.598 42 H 0.160 0.840 43 H 0.175 0.825 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.079 0.921 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.241 16.443 6.431 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.326 5.326 6 C -0.352 4.352 7 H 0.093 0.907 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.021 3.979 15 C 0.018 3.982 16 H 0.105 0.895 17 N -0.337 5.337 18 C 0.385 3.615 19 O -0.414 6.414 20 C -0.166 4.166 21 C -0.209 4.209 22 C -0.166 4.166 23 N -0.066 5.066 24 C 0.043 3.957 25 C -0.172 4.172 26 C -0.167 4.167 27 C -0.161 4.161 28 C -0.176 4.176 29 N -0.096 5.096 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.039 0.961 41 H 0.237 0.763 42 H 0.177 0.823 43 H 0.193 0.807 44 H 0.128 0.872 45 H 0.109 0.891 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.097 0.903 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.975 16.280 5.886 21.634 hybrid contribution 0.634 -0.965 -0.168 1.167 sum 13.610 15.315 5.718 21.271 Atomic orbital electron populations 1.21681 0.93558 1.02463 1.00826 1.21848 0.95943 0.94574 0.96433 1.21711 1.00581 0.95402 1.01138 1.21420 0.96406 0.86808 0.93622 1.44442 1.74142 1.06657 1.07389 1.19016 1.34092 0.89231 0.92836 0.90653 1.24778 1.01802 0.97595 0.96309 1.69809 1.53623 1.22246 1.10742 0.86131 0.78686 0.81894 0.79119 1.21820 1.21694 1.20817 1.22311 1.00057 0.90509 0.85066 1.22549 0.81204 0.98169 0.96258 0.89483 1.45634 1.14639 1.61335 1.12078 1.16803 0.83588 0.78393 0.82693 1.90763 1.59481 1.43822 1.47381 1.22111 0.95706 1.05838 0.92953 1.21768 0.93271 1.06436 0.99377 1.22690 0.99997 1.05306 0.88635 1.45675 1.09469 1.43072 1.08416 1.22224 0.82143 0.94766 0.96575 1.22799 0.97582 0.98458 0.98357 1.22631 0.98283 0.98003 0.97734 1.22377 0.96609 1.01066 0.96040 1.22626 0.94747 0.99033 1.01176 1.73532 0.92828 1.17977 1.25257 0.93062 0.92765 0.91735 0.92806 0.92829 0.92870 0.96151 0.95903 0.93752 0.86935 0.96129 0.76262 0.82267 0.80742 0.87202 0.89088 0.90015 0.91027 0.90669 0.90965 0.90995 0.90274 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.41 37.16 0.31 -1.71 16 2 C -0.09 -1.53 0.81 -152.62 -0.12 -1.66 16 3 C -0.13 -1.90 8.08 37.15 0.30 -1.60 16 4 C 0.14 3.02 6.41 -3.01 -0.02 3.00 16 5 N -0.60 -15.60 3.39 -170.02 -0.58 -16.18 16 6 C -0.22 -6.36 10.27 -15.06 -0.15 -6.52 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.93 10.09 55.49 0.56 -27.37 16 10 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.15 3.75 5.27 -2.53 -0.01 3.74 16 15 C 0.12 2.55 2.61 -65.78 -0.17 2.38 16 16 H 0.09 1.81 7.53 -51.92 -0.39 1.42 16 17 N -0.69 -13.72 4.62 -52.71 -0.24 -13.96 16 18 C 0.60 12.54 7.83 -12.39 -0.10 12.44 16 19 O -0.54 -12.69 16.62 5.31 0.09 -12.60 16 20 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 21 C -0.18 -2.74 10.81 -39.36 -0.43 -3.16 16 22 C -0.02 -0.28 10.01 -17.17 -0.17 -0.46 16 23 N -0.28 -3.49 3.12 -53.74 -0.17 -3.66 16 24 C 0.14 1.27 3.88 -66.81 -0.26 1.01 16 25 C -0.13 -0.79 5.92 -25.03 -0.15 -0.94 16 26 C -0.13 -0.68 6.67 -24.70 -0.16 -0.84 16 27 C -0.12 -0.74 6.83 -25.07 -0.17 -0.91 16 28 C -0.14 -1.16 6.59 -25.62 -0.17 -1.32 16 29 N -0.26 -4.24 11.67 33.42 0.39 -3.85 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.15 7.57 -51.93 -0.39 0.75 16 33 H 0.05 0.79 6.42 -51.93 -0.33 0.46 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.43 7.77 -51.93 -0.40 0.02 16 37 H 0.02 0.48 7.85 -51.93 -0.41 0.08 16 38 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.11 3.37 5.87 -51.93 -0.30 3.06 16 40 H 0.02 0.57 7.80 -51.93 -0.41 0.16 16 41 H 0.40 7.66 6.75 -40.82 -0.28 7.38 16 42 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.18 1.40 6.23 -52.49 -0.33 1.08 16 44 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.52 7.29 -51.93 -0.38 0.14 16 47 H 0.07 0.39 6.64 -51.93 -0.34 0.05 16 48 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 52 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 404.65 15.07 6.10 6.10 Total: -1.00 -34.53 404.65 -9.61 -44.14 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.57 Total: 7.20 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -2.16 Total: 2.41 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -0.04 Total: -65.02 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.53 -9.61 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974636505.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.640 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds