Wall clock time and date at job start Wed Apr 1 2020 04:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.78066 * 2 1 4 4 C 1.54427 * 110.72511 * 236.70140 * 2 1 3 5 5 N 1.47018 * 107.28427 * 263.85044 * 4 2 1 6 6 C 1.36934 * 125.64837 * 181.09953 * 5 4 2 7 7 H 1.07990 * 120.00242 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99853 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00232 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00023 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47257 * 89.99779 * 10 8 6 12 12 H 1.48499 * 109.47100 * 209.99783 * 10 8 6 13 13 H 1.48496 * 109.47010 * 330.00113 * 10 8 6 14 14 C 1.47423 * 108.70120 * 1.05555 * 5 4 2 15 15 C 1.54906 * 104.83420 * 335.87648 * 14 5 4 16 16 H 1.09007 * 111.00601 * 155.11884 * 15 14 5 17 17 N 1.46501 * 111.00255 * 278.93268 * 15 14 5 18 18 C 1.34779 * 119.99630 * 270.41550 * 17 15 14 19 19 O 1.21568 * 120.00555 * 0.02562 * 18 17 15 20 20 C 1.47719 * 119.99531 * 179.97438 * 18 17 15 21 21 C 1.41503 * 126.51480 * 180.02562 * 20 18 17 22 22 C 1.35366 * 105.50235 * 180.02562 * 21 20 18 23 23 N 1.35034 * 107.22683 * 0.02562 * 22 21 20 24 24 C 1.46501 * 124.88533 * 179.97438 * 23 22 21 25 25 C 1.54270 * 110.03162 * 327.09352 * 24 23 22 26 26 C 1.54961 * 104.16191 * 95.75208 * 25 24 23 27 27 C 1.54895 * 102.77671 * 37.88526 * 26 25 24 28 28 C 1.53869 * 110.03042 * 84.30880 * 24 23 22 29 29 N 1.28471 * 110.23221 * 0.22618 * 23 22 21 30 30 H 1.09006 * 109.46998 * 296.76082 * 1 2 3 31 31 H 1.08994 * 109.46825 * 56.76137 * 1 2 3 32 32 H 1.08993 * 109.46973 * 176.76373 * 1 2 3 33 33 H 1.09003 * 109.47552 * 183.23900 * 3 2 1 34 34 H 1.09001 * 109.47183 * 303.23771 * 3 2 1 35 35 H 1.08997 * 109.47709 * 63.23783 * 3 2 1 36 36 H 1.09002 * 109.87593 * 144.42671 * 4 2 1 37 37 H 1.09003 * 110.00528 * 23.34568 * 4 2 1 38 38 H 0.96993 * 120.00257 * 179.97438 * 9 8 6 39 39 H 1.08995 * 110.37065 * 217.03204 * 14 5 4 40 40 H 1.09003 * 110.36648 * 94.71192 * 14 5 4 41 41 H 0.96993 * 119.99831 * 90.42037 * 17 15 14 42 42 H 1.08002 * 127.25378 * 0.02562 * 21 20 18 43 43 H 1.07998 * 126.38387 * 180.02562 * 22 21 20 44 44 H 1.09002 * 110.01794 * 205.69995 * 24 23 22 45 45 H 1.08997 * 110.48585 * 214.40010 * 25 24 23 46 46 H 1.09002 * 110.48442 * 337.03893 * 25 24 23 47 47 H 1.09001 * 110.71970 * 279.57802 * 26 25 24 48 48 H 1.08991 * 110.92569 * 156.29385 * 26 25 24 49 49 H 1.08997 * 110.48689 * 203.40743 * 27 26 25 50 50 H 1.09000 * 110.59637 * 80.82119 * 27 26 25 51 51 H 1.08999 * 110.03405 * 359.95371 * 28 24 23 52 52 H 1.09001 * 110.03705 * 121.33517 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0765 -0.7929 -1.2072 5 7 2.3717 -2.1546 -0.7379 6 6 2.8947 -3.1653 -1.4995 7 1 3.1255 -2.9932 -2.5403 8 6 3.1280 -4.4112 -0.9336 9 7 2.8471 -4.6209 0.3350 10 14 3.8407 -5.7903 -1.9727 11 1 5.3232 -5.7532 -1.8952 12 1 3.3511 -7.0969 -1.4644 13 1 3.4145 -5.6173 -3.3846 14 6 2.0125 -2.2512 0.6886 15 6 2.0790 -0.7954 1.2138 16 1 1.4399 -0.6656 2.0873 17 7 3.4595 -0.4082 1.5144 18 6 3.9681 -0.6262 2.7434 19 8 3.2815 -1.1446 3.6023 20 6 5.3603 -0.2362 3.0463 21 6 6.0308 -0.4001 4.2816 22 6 7.2741 0.0988 4.0874 23 7 7.3356 0.5336 2.8104 24 6 8.5122 1.1476 2.1901 25 6 9.3009 1.9576 3.2398 26 6 10.4029 0.9810 3.7226 27 6 10.7986 0.2405 2.4209 28 6 9.4637 0.0561 1.6699 29 7 6.2122 0.3361 2.2193 30 1 -0.3633 0.4628 0.9177 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 3.1610 1.4062 -0.0581 34 1 1.6751 1.9700 -0.8595 35 1 1.7691 1.9344 0.9175 36 1 2.9875 -0.3228 -1.5777 37 1 1.3289 -0.8279 -1.9997 38 1 3.0098 -5.4916 0.7303 39 1 2.7289 -2.8788 1.2186 40 1 1.0037 -2.6488 0.7997 41 1 4.0074 0.0051 0.8291 42 1 5.6342 -0.8323 5.1885 43 1 8.0686 0.1412 4.8176 44 1 8.2055 1.7973 1.3704 45 1 9.7474 2.8409 2.7833 46 1 8.6522 2.2419 4.0684 47 1 10.0039 0.2825 4.4582 48 1 11.2540 1.5256 4.1311 49 1 11.2428 -0.7275 2.6527 50 1 11.4881 0.8442 1.8308 51 1 9.0505 -0.9305 1.8796 52 1 9.6183 0.1755 0.5975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974636505.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:41 Heat of formation + Delta-G solvation = 42.437346 kcal Electronic energy + Delta-G solvation = -31716.695347 eV Core-core repulsion = 27717.407451 eV Total energy + Delta-G solvation = -3999.287897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.72381 -41.08832 -39.41553 -38.81123 -35.68333 -34.54959 -33.24717 -32.61674 -31.76430 -30.00248 -29.72288 -28.85481 -27.98000 -27.41439 -25.53286 -24.20735 -23.05881 -22.11452 -21.66200 -21.22105 -20.64554 -20.09244 -18.72916 -18.70937 -17.79628 -17.37621 -16.99998 -16.59270 -16.40625 -15.76940 -15.64684 -15.62579 -15.30755 -15.18924 -14.66371 -14.52810 -14.41827 -14.12702 -13.83745 -13.74019 -13.64234 -13.04513 -13.01654 -12.93354 -12.86937 -12.63935 -12.58129 -12.51358 -12.12778 -12.11420 -12.06305 -12.02395 -11.91011 -11.80917 -11.78525 -11.50763 -11.46544 -11.37412 -11.15563 -10.77142 -10.25918 -10.08805 -9.86120 -8.85131 -7.75704 -5.21142 0.56799 1.19237 1.41460 1.44092 1.50072 1.53113 2.23720 2.46833 2.47660 3.22124 3.33325 3.48997 3.54827 3.62230 3.69099 3.83979 3.88711 3.96574 4.06941 4.12217 4.27268 4.40047 4.40318 4.43402 4.51394 4.53846 4.66702 4.70201 4.74662 4.78177 4.83756 4.84671 4.86247 4.90580 4.99397 5.02794 5.05507 5.10451 5.19223 5.21023 5.22399 5.28621 5.31812 5.36160 5.41198 5.46709 5.52426 5.68222 5.82761 5.93050 6.30729 6.53165 6.95114 7.08586 7.25533 7.78445 8.42764 9.24898 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.003449 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.896267 B = 8116.269289 C = 9577.120329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.123 4.123 4 C 0.139 3.861 5 N -0.618 5.618 6 C -0.234 4.234 7 H 0.084 0.916 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.978 3.022 11 H -0.289 1.289 12 H -0.296 1.296 13 H -0.265 1.265 14 C 0.155 3.845 15 C 0.133 3.867 16 H 0.084 0.916 17 N -0.681 5.681 18 C 0.595 3.405 19 O -0.578 6.578 20 C -0.043 4.043 21 C -0.204 4.204 22 C 0.003 3.997 23 N -0.266 5.266 24 C 0.131 3.869 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.118 4.118 28 C -0.138 4.138 29 N -0.275 5.275 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.030 0.970 38 H 0.242 0.758 39 H 0.066 0.934 40 H -0.009 1.009 41 H 0.407 0.593 42 H 0.161 0.839 43 H 0.219 0.781 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.048 0.952 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.579 19.379 5.805 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 C -0.180 4.180 4 C 0.014 3.986 5 N -0.343 5.343 6 C -0.363 4.363 7 H 0.102 0.898 8 C -0.262 4.262 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.216 1.216 12 H -0.223 1.223 13 H -0.190 1.190 14 C 0.029 3.971 15 C 0.027 3.973 16 H 0.102 0.898 17 N -0.331 5.331 18 C 0.381 3.619 19 O -0.457 6.457 20 C -0.202 4.202 21 C -0.232 4.232 22 C -0.140 4.140 23 N -0.055 5.055 24 C 0.032 3.968 25 C -0.163 4.163 26 C -0.164 4.164 27 C -0.156 4.156 28 C -0.176 4.176 29 N -0.112 5.112 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.009 0.991 41 H 0.243 0.757 42 H 0.179 0.821 43 H 0.236 0.764 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.114 0.886 49 H 0.088 0.912 50 H 0.106 0.894 51 H 0.067 0.933 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.321 19.266 5.211 25.161 hybrid contribution 0.001 -1.850 -0.017 1.850 sum 15.321 17.416 5.194 23.770 Atomic orbital electron populations 1.21682 0.91924 1.01446 1.03169 1.21843 0.97154 0.95722 0.92642 1.21667 1.00357 0.92929 1.03083 1.21650 0.96968 0.84810 0.95187 1.44668 1.73967 1.08237 1.07467 1.19448 1.33352 0.90083 0.93459 0.89838 1.25653 1.02853 1.00200 0.97451 1.70130 1.55150 1.22034 1.12532 0.85076 0.77642 0.78364 0.78255 1.21619 1.22277 1.18990 1.21938 0.96866 0.93068 0.85245 1.22294 0.81998 0.95686 0.97299 0.89802 1.45566 1.14377 1.60989 1.12127 1.17302 0.84737 0.77503 0.82355 1.90717 1.60905 1.45597 1.48437 1.21834 0.94931 1.08622 0.94785 1.21977 0.94604 1.07835 0.98784 1.23212 0.99551 1.02491 0.88744 1.46157 1.09192 1.41460 1.08684 1.22719 0.81017 0.95149 0.97940 1.22835 0.97201 0.98802 0.97423 1.22657 0.98738 0.97824 0.97131 1.22378 0.95241 1.01533 0.96432 1.22622 0.95990 0.97145 1.01864 1.73447 0.93920 1.18284 1.25581 0.91102 0.89967 0.94520 0.93118 0.90070 0.91597 0.95359 0.95225 0.94780 0.91579 0.99109 0.75675 0.82113 0.76421 0.86870 0.86795 0.89894 0.91199 0.88593 0.91175 0.89354 0.93337 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 8.41 71.98 0.61 -3.18 16 2 C -0.07 -2.50 0.81 -50.96 -0.04 -2.54 16 3 C -0.12 -3.25 8.08 71.98 0.58 -2.67 16 4 C 0.14 5.79 6.41 86.77 0.56 6.34 16 5 N -0.62 -33.11 3.39 -691.81 -2.35 -35.46 16 6 C -0.23 -13.67 10.27 84.03 0.86 -12.80 16 7 H 0.08 4.61 7.83 -2.92 -0.02 4.59 16 8 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 9 N -0.95 -61.07 10.09 21.65 0.22 -60.85 16 10 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 14 C 0.16 8.45 5.27 86.85 0.46 8.91 16 15 C 0.13 5.70 2.61 46.38 0.12 5.82 16 16 H 0.08 3.64 7.53 -2.38 -0.02 3.62 16 17 N -0.68 -28.21 4.62 -438.94 -2.03 -30.24 16 18 C 0.60 26.16 7.83 86.75 0.68 26.84 16 19 O -0.58 -29.02 16.62 -3.93 -0.07 -29.09 16 20 C -0.04 -1.62 7.13 42.46 0.30 -1.31 16 21 C -0.20 -6.25 10.81 22.41 0.24 -6.01 16 22 C 0.00 0.07 10.01 83.54 0.84 0.90 16 23 N -0.27 -6.37 3.12 -323.94 -1.01 -7.38 16 24 C 0.13 2.03 3.88 45.72 0.18 2.20 16 25 C -0.12 -1.00 5.92 31.70 0.19 -0.81 16 26 C -0.13 -0.84 6.67 31.91 0.21 -0.62 16 27 C -0.12 -1.08 6.83 31.67 0.22 -0.87 16 28 C -0.14 -2.11 6.59 31.32 0.21 -1.90 16 29 N -0.28 -8.99 11.67 -48.17 -0.56 -9.55 16 30 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.31 7.57 -2.39 -0.02 1.29 16 33 H 0.05 1.38 6.42 -2.39 -0.02 1.37 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.15 7.77 -2.39 -0.02 1.13 16 37 H 0.03 1.21 7.85 -2.39 -0.02 1.19 16 38 H 0.24 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.07 4.26 5.87 -2.39 -0.01 4.25 16 40 H -0.01 -0.52 7.80 -2.39 -0.02 -0.54 16 41 H 0.41 15.83 6.75 -92.71 -0.63 15.20 16 42 H 0.16 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.22 2.73 6.23 -2.91 -0.02 2.71 16 44 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.08 0.71 7.29 -2.39 -0.02 0.69 16 47 H 0.07 0.50 6.64 -2.39 -0.02 0.48 16 48 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.05 1.05 7.92 -2.39 -0.02 1.03 16 52 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -81.44 404.65 3.19 -78.25 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.29 Total: 29.56 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 6.67 Total: 14.63 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -5.73 Total: -143.48 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.07 Total: -29.09 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -81.44 3.19 -78.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974636505.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.685 kcal (2) G-P(sol) polarization free energy of solvation -81.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds