Wall clock time and date at job start Wed Apr 1 2020 04:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 110.91078 * 2 1 4 4 C 1.54903 * 111.00587 * 236.09804 * 2 1 3 5 5 N 1.47428 * 104.83107 * 278.93543 * 4 2 1 6 6 C 1.36935 * 125.65017 * 155.82994 * 5 4 2 7 7 H 1.08007 * 119.99896 * 353.83811 * 6 5 4 8 8 C 1.38812 * 120.00467 * 173.84596 * 6 5 4 9 9 N 1.31626 * 119.99484 * 6.80074 * 8 6 5 10 10 Si 1.86795 * 120.00369 * 186.80522 * 8 6 5 11 11 H 1.48494 * 109.47239 * 94.97996 * 10 8 6 12 12 H 1.48493 * 109.47118 * 214.98431 * 10 8 6 13 13 H 1.48504 * 109.46995 * 334.98022 * 10 8 6 14 14 C 1.47023 * 108.70503 * 335.86848 * 5 4 2 15 15 C 1.54327 * 107.26756 * 1.06378 * 14 5 4 16 16 H 1.08999 * 110.87598 * 140.62775 * 15 14 5 17 17 N 1.46502 * 110.71963 * 263.82757 * 15 14 5 18 18 C 1.34775 * 120.00139 * 268.52355 * 17 15 14 19 19 O 1.21285 * 119.99834 * 0.02562 * 18 17 15 20 20 C 1.50698 * 120.00199 * 179.97438 * 18 17 15 21 21 C 1.50705 * 109.47074 * 180.02562 * 20 18 17 22 22 C 1.40059 * 126.09886 * 265.11900 * 21 20 18 23 23 N 1.31025 * 108.25414 * 180.29902 * 22 21 20 24 24 N 1.39659 * 108.12650 * 359.71142 * 23 22 21 25 25 C 1.34743 * 126.10194 * 84.99977 * 21 20 18 26 26 C 1.50871 * 127.76503 * 0.02582 * 25 21 20 27 27 C 1.53436 * 108.17492 * 163.91049 * 26 25 21 28 28 C 1.53149 * 109.18892 * 48.57740 * 27 26 25 29 29 C 1.46589 * 127.54938 * 180.12871 * 24 23 22 30 30 H 1.09001 * 109.47233 * 296.09497 * 1 2 3 31 31 H 1.08998 * 109.47403 * 56.10358 * 1 2 3 32 32 H 1.09011 * 109.46888 * 176.10157 * 1 2 3 33 33 H 1.09003 * 109.46245 * 183.90035 * 3 2 1 34 34 H 1.09002 * 109.47035 * 303.90170 * 3 2 1 35 35 H 1.08995 * 109.46807 * 63.90352 * 3 2 1 36 36 H 1.09001 * 110.36629 * 37.76738 * 4 2 1 37 37 H 1.08992 * 110.37095 * 159.98402 * 4 2 1 38 38 H 0.97003 * 119.99249 * 180.02562 * 9 8 6 39 39 H 1.08998 * 109.88764 * 241.64891 * 14 5 4 40 40 H 1.08995 * 109.88101 * 120.47326 * 14 5 4 41 41 H 0.97000 * 120.00313 * 88.52280 * 17 15 14 42 42 H 1.09001 * 109.47216 * 60.00259 * 20 18 17 43 43 H 1.09001 * 109.47377 * 299.99764 * 20 18 17 44 44 H 1.08000 * 125.87747 * 0.05054 * 22 21 20 45 45 H 1.08995 * 109.72339 * 283.58086 * 26 25 21 46 46 H 1.09002 * 109.71933 * 44.24063 * 26 25 21 47 47 H 1.09009 * 109.51909 * 168.48588 * 27 26 25 48 48 H 1.08995 * 109.52511 * 288.60333 * 27 26 25 49 49 H 1.09007 * 109.45920 * 50.58537 * 28 27 26 50 50 H 1.08997 * 109.46400 * 170.53216 * 28 27 26 51 51 H 1.08995 * 109.58162 * 42.88454 * 29 24 23 52 52 H 1.08998 * 109.69624 * 282.53721 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4293 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 2.0139 -2.2159 -0.7732 6 6 1.9446 -3.2999 -1.6070 7 1 1.8386 -3.1560 -2.6722 8 6 2.0103 -4.5838 -1.0833 9 7 2.0043 -4.7637 0.2206 10 14 2.1074 -6.0560 -2.2289 11 1 3.5286 -6.4423 -2.4191 12 1 1.3601 -7.1942 -1.6365 13 1 1.5108 -5.7018 -3.5418 14 6 2.0286 -2.2646 0.6961 15 6 2.0861 -0.8079 1.2023 16 1 1.4541 -0.6766 2.0806 17 7 3.4667 -0.4154 1.4962 18 6 3.9655 -0.5838 2.7369 19 8 3.2716 -1.0607 3.6099 20 6 5.3857 -0.1807 3.0392 21 6 5.6934 -0.4714 4.4856 22 6 5.5979 0.4362 5.5481 23 7 5.9524 -0.1811 6.6481 24 7 6.2773 -1.4994 6.3212 25 6 6.1073 -1.6513 4.9876 26 6 6.3575 -2.9371 4.2392 27 6 7.1856 -3.8623 5.1407 28 6 6.5467 -3.9136 6.5316 29 6 6.7250 -2.5603 7.2283 30 1 -0.3634 0.4520 0.9229 31 1 -0.3634 0.5731 -0.8530 32 1 -0.3633 -1.0254 -0.0699 33 1 3.1636 1.4026 -0.0699 34 1 1.6703 1.9732 -0.8530 35 1 1.7835 1.9299 0.9229 36 1 1.4672 -0.6462 -2.0836 37 1 3.1175 -0.5219 -1.4036 38 1 2.0506 -5.6608 0.5865 39 1 2.9064 -2.8115 1.0402 40 1 1.1219 -2.7479 1.0600 41 1 4.0218 -0.0344 0.7980 42 1 5.5093 0.8853 2.8482 43 1 6.0670 -0.7453 2.4026 44 1 5.2893 1.4684 5.4730 45 1 5.4071 -3.4131 3.9977 46 1 6.9082 -2.7278 3.3221 47 1 7.2068 -4.8646 4.7126 48 1 8.2027 -3.4787 5.2202 49 1 5.4837 -4.1349 6.4350 50 1 7.0271 -4.6927 7.1234 51 1 6.1283 -2.5374 8.1401 52 1 7.7762 -2.4127 7.4759 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974696032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:41 Heat of formation + Delta-G solvation = 32.142747 kcal Electronic energy + Delta-G solvation = -31843.228587 eV Core-core repulsion = 27843.494283 eV Total energy + Delta-G solvation = -3999.734304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.53885 -41.04399 -39.29593 -37.41378 -35.62390 -34.42590 -34.21484 -32.57855 -31.50523 -31.18401 -29.67819 -28.12075 -27.47596 -27.02541 -25.19092 -24.95011 -23.17581 -22.43910 -21.66070 -21.02711 -20.08888 -19.65097 -18.65677 -17.95657 -17.53106 -16.99254 -16.66498 -16.49708 -16.06489 -15.63538 -15.45438 -15.39668 -15.24663 -15.13483 -14.79569 -14.73414 -14.56047 -14.01108 -13.84799 -13.73798 -13.52665 -13.43576 -13.14134 -12.94400 -12.92061 -12.80640 -12.69663 -12.60142 -12.53120 -12.07968 -12.01723 -11.96243 -11.89284 -11.81999 -11.68865 -11.48355 -11.45845 -11.27136 -10.82425 -10.65512 -10.11693 -9.84596 -9.24826 -8.84582 -7.82181 -5.17520 0.93124 1.45454 1.46791 1.55918 1.61842 1.75267 1.87518 2.49728 2.55844 3.36007 3.42970 3.55857 3.64699 3.75532 3.77666 3.78848 3.98933 4.02124 4.11766 4.13832 4.29029 4.32406 4.36866 4.45631 4.49107 4.53550 4.59092 4.68332 4.77628 4.78350 4.84134 4.87776 4.90144 4.93433 4.99550 5.00063 5.05214 5.11112 5.18379 5.21361 5.21677 5.29485 5.38237 5.40316 5.50422 5.60242 5.74921 5.76562 5.85887 6.13282 6.20537 6.78419 6.79392 7.11161 7.50835 7.81077 8.46085 9.27387 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.003508 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.702087 B = 7979.435838 C =10136.063012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 C -0.122 4.122 4 C 0.139 3.861 5 N -0.619 5.619 6 C -0.237 4.237 7 H 0.086 0.914 8 C -0.066 4.066 9 N -0.951 5.951 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.301 1.301 13 H -0.265 1.265 14 C 0.195 3.805 15 C 0.140 3.860 16 H 0.069 0.931 17 N -0.702 5.702 18 C 0.508 3.492 19 O -0.587 6.587 20 C -0.048 4.048 21 C -0.234 4.234 22 C 0.053 3.947 23 N -0.332 5.332 24 N -0.378 5.378 25 C 0.094 3.906 26 C -0.065 4.065 27 C -0.120 4.120 28 C -0.133 4.133 29 C 0.126 3.874 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.036 0.964 38 H 0.243 0.757 39 H 0.007 0.993 40 H -0.007 1.007 41 H 0.410 0.590 42 H 0.136 0.864 43 H 0.111 0.889 44 H 0.204 0.796 45 H 0.061 0.939 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.054 0.946 50 H 0.124 0.876 51 H 0.091 0.909 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.069 11.398 7.073 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.077 4.077 3 C -0.179 4.179 4 C 0.014 3.986 5 N -0.345 5.345 6 C -0.366 4.366 7 H 0.103 0.897 8 C -0.259 4.259 9 N -0.600 5.600 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.228 1.228 13 H -0.190 1.190 14 C 0.068 3.932 15 C 0.033 3.967 16 H 0.088 0.912 17 N -0.354 5.354 18 C 0.296 3.704 19 O -0.466 6.466 20 C -0.088 4.088 21 C -0.246 4.246 22 C -0.133 4.133 23 N -0.153 5.153 24 N -0.161 5.161 25 C -0.034 4.034 26 C -0.103 4.103 27 C -0.157 4.157 28 C -0.171 4.171 29 C 0.006 3.994 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.025 0.975 40 H 0.012 0.988 41 H 0.248 0.752 42 H 0.154 0.846 43 H 0.129 0.871 44 H 0.220 0.780 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.109 0.891 48 H 0.103 0.897 49 H 0.072 0.928 50 H 0.142 0.858 51 H 0.109 0.891 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.800 10.862 9.092 18.436 hybrid contribution -0.505 -1.438 -1.348 2.034 sum 11.296 9.424 7.745 16.625 Atomic orbital electron populations 1.21600 0.93366 1.00842 1.02414 1.21986 0.96314 0.96076 0.93341 1.21632 1.01321 0.92218 1.02770 1.21889 0.97830 0.83250 0.95628 1.44676 1.86521 1.01631 1.01713 1.19474 1.41931 0.84959 0.90214 0.89659 1.25639 1.02850 1.00195 0.97180 1.70262 1.58235 1.20220 1.11325 0.85127 0.77329 0.78992 0.78345 1.21368 1.22779 1.18963 1.21072 0.96809 0.91685 0.83607 1.21954 0.83314 0.94370 0.97055 0.91246 1.45840 1.13658 1.64101 1.11786 1.21393 0.90424 0.77069 0.81491 1.90679 1.62311 1.45913 1.47730 1.19920 0.91042 1.05583 0.92278 1.19277 1.14912 0.93823 0.96562 1.24180 0.98706 1.01188 0.89193 1.77124 1.23646 0.90208 1.24274 1.48797 1.52441 1.08882 1.05976 1.21075 0.99652 0.97330 0.85360 1.20515 1.01029 0.90150 0.98627 1.21666 0.99232 1.00565 0.94251 1.21981 1.02035 0.95759 0.97357 1.22056 1.01582 0.83581 0.92139 0.91935 0.90380 0.95364 0.91273 0.90622 0.91939 0.93689 0.94649 0.94818 0.97528 0.98849 0.75245 0.84604 0.87103 0.77970 0.92044 0.88029 0.89143 0.89693 0.92753 0.85818 0.89051 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.57 71.98 0.62 -3.25 16 2 C -0.08 -2.36 0.83 -50.79 -0.04 -2.40 16 3 C -0.12 -2.58 8.22 71.98 0.59 -1.99 16 4 C 0.14 5.18 6.12 86.85 0.53 5.71 16 5 N -0.62 -31.06 3.38 -692.00 -2.34 -33.39 16 6 C -0.24 -13.13 10.26 84.03 0.86 -12.26 16 7 H 0.09 4.47 7.84 -2.91 -0.02 4.45 16 8 C -0.07 -3.78 5.48 84.86 0.47 -3.32 16 9 N -0.95 -59.19 10.36 21.65 0.22 -58.97 16 10 Si 0.97 46.09 29.56 68.60 2.03 48.12 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 C 0.19 10.00 4.80 86.73 0.42 10.42 16 15 C 0.14 5.36 2.59 46.18 0.12 5.48 16 16 H 0.07 2.93 7.45 -2.39 -0.02 2.91 16 17 N -0.70 -21.99 4.45 -436.91 -1.95 -23.93 16 18 C 0.51 16.89 7.82 87.66 0.69 17.58 16 19 O -0.59 -25.92 15.68 -3.05 -0.05 -25.97 16 20 C -0.05 -1.11 5.98 29.10 0.17 -0.94 16 21 C -0.23 -6.57 4.59 -20.22 -0.09 -6.66 16 22 C 0.05 1.45 11.97 85.25 1.02 2.47 16 23 N -0.33 -10.14 12.62 -56.80 -0.72 -10.85 16 24 N -0.38 -10.51 4.04 -334.10 -1.35 -11.86 16 25 C 0.09 2.69 6.58 41.28 0.27 2.96 16 26 C -0.06 -1.63 6.02 30.05 0.18 -1.45 16 27 C -0.12 -2.13 5.97 30.79 0.18 -1.95 16 28 C -0.13 -2.26 5.93 30.73 0.18 -2.08 16 29 C 0.13 2.44 7.28 86.45 0.63 3.07 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.03 1.08 7.91 -2.38 -0.02 1.06 16 33 H 0.07 1.25 6.48 -2.39 -0.02 1.23 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 1.64 8.05 -2.39 -0.02 1.62 16 37 H 0.04 1.22 7.98 -2.39 -0.02 1.20 16 38 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.01 0.39 7.27 -2.39 -0.02 0.37 16 40 H -0.01 -0.41 7.55 -2.39 -0.02 -0.42 16 41 H 0.41 10.15 7.11 -92.71 -0.66 9.49 16 42 H 0.14 2.07 8.14 -2.39 -0.02 2.06 16 43 H 0.11 2.23 7.87 -2.39 -0.02 2.21 16 44 H 0.20 4.15 8.06 -2.91 -0.02 4.12 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.10 2.24 7.92 -2.39 -0.02 2.22 16 47 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 48 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 49 H 0.05 1.19 8.12 -2.38 -0.02 1.17 16 50 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -82.79 407.90 2.90 -79.89 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.25 Total: 25.58 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.80 Total: 11.39 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -6.13 Total: -139.01 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -82.79 2.90 -79.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974696032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.031 kcal (2) G-P(sol) polarization free energy of solvation -82.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds