Wall clock time and date at job start Wed Apr 1 2020 04:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34854 * 125.96140 * 2 1 4 4 N 1.36317 * 106.68632 * 180.02562 * 3 2 1 5 5 C 1.35414 * 107.39597 * 359.96440 * 4 3 2 6 6 N 1.30083 * 108.63448 * 359.78099 * 5 4 3 7 7 C 1.51049 * 123.97938 * 180.11674 * 5 4 3 8 8 C 1.53403 * 108.20218 * 15.98922 * 7 5 4 9 9 H 1.08996 * 109.50978 * 71.11420 * 8 7 5 10 10 C 1.50700 * 109.50992 * 191.21473 * 8 7 5 11 11 O 1.21279 * 119.99651 * 119.99897 * 10 8 7 12 12 N 1.34776 * 119.99860 * 299.99568 * 10 8 7 13 13 C 1.46498 * 119.99747 * 180.02562 * 12 10 8 14 14 H 1.08994 * 110.64439 * 325.70493 * 13 12 10 15 15 C 1.54327 * 110.71791 * 88.84550 * 13 12 10 16 16 N 1.47018 * 107.27219 * 96.17150 * 15 13 12 17 17 C 1.36941 * 125.64738 * 178.90932 * 16 15 13 18 18 H 1.08001 * 119.99507 * 180.02562 * 17 16 15 19 19 C 1.38805 * 120.00166 * 0.02562 * 17 16 15 20 20 N 1.31622 * 119.99889 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47706 * 59.99697 * 21 19 17 23 23 H 1.48508 * 109.47175 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46840 * 299.99827 * 21 19 17 25 25 C 1.47427 * 108.70502 * 358.93747 * 16 15 13 26 26 C 1.55159 * 110.71985 * 202.55883 * 13 12 10 27 27 C 1.52993 * 111.00355 * 35.21607 * 26 13 12 28 28 C 1.53000 * 111.00290 * 159.06761 * 26 13 12 29 29 C 1.53150 * 109.22776 * 311.14007 * 8 7 5 30 30 C 1.46476 * 127.77292 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47152 * 90.00369 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00469 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00450 * 1 2 3 34 34 H 1.08004 * 126.65554 * 359.97200 * 3 2 1 35 35 H 1.09000 * 109.71376 * 135.65976 * 7 5 4 36 36 H 1.08997 * 109.72267 * 256.30932 * 7 5 4 37 37 H 0.97002 * 120.00031 * 0.02562 * 12 10 8 38 38 H 1.09003 * 109.88172 * 215.58664 * 15 13 12 39 39 H 1.08998 * 109.88108 * 336.75002 * 15 13 12 40 40 H 0.97000 * 120.00071 * 179.97438 * 20 19 17 41 41 H 1.08994 * 110.36486 * 142.96971 * 25 16 15 42 42 H 1.09004 * 110.36506 * 265.29577 * 25 16 15 43 43 H 1.08999 * 109.47358 * 59.99985 * 27 26 13 44 44 H 1.08998 * 109.47248 * 179.97438 * 27 26 13 45 45 H 1.09004 * 109.47277 * 299.99527 * 27 26 13 46 46 H 1.09001 * 109.47161 * 59.99974 * 28 26 13 47 47 H 1.09003 * 109.47101 * 179.97438 * 28 26 13 48 48 H 1.08995 * 109.47047 * 299.99880 * 28 26 13 49 49 H 1.09000 * 109.46248 * 189.49632 * 29 8 7 50 50 H 1.09003 * 109.46592 * 309.48332 * 29 8 7 51 51 H 1.08994 * 109.58840 * 316.88882 * 30 4 3 52 52 H 1.09002 * 109.57785 * 77.30029 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 -0.0006 5 6 3.5413 -0.7119 -0.0001 6 7 2.2957 -1.0869 0.0054 7 6 4.7655 -1.5967 0.0020 8 6 5.9739 -0.7419 0.4049 9 1 5.9048 -0.4897 1.4630 10 6 7.2432 -1.5144 0.1533 11 8 8.0761 -1.0789 -0.6132 12 7 7.4526 -2.6890 0.7801 13 6 8.6867 -3.4396 0.5359 14 1 9.0145 -3.3150 -0.4961 15 6 9.7947 -3.0027 1.5173 16 7 9.7873 -3.9559 2.6365 17 6 10.6354 -3.9314 3.7114 18 1 10.5488 -4.6803 4.4847 19 6 11.6064 -2.9441 3.8069 20 7 11.7116 -2.0312 2.8646 21 14 12.7638 -2.9111 5.2727 22 1 13.5352 -4.1789 5.3231 23 1 13.7002 -1.7663 5.1384 24 1 11.9757 -2.7612 6.5224 25 6 8.7159 -4.9430 2.4098 26 6 8.4913 -4.9417 0.8722 27 6 7.0758 -5.4029 0.5197 28 6 9.5387 -5.8030 0.1638 29 6 5.9832 0.5429 -0.4287 30 6 4.8148 1.4383 -0.0013 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.9763 2.1222 -0.0004 35 1 4.6325 -2.4066 0.7193 36 1 4.9228 -2.0094 -0.9945 37 1 6.7862 -3.0373 1.3928 38 1 10.7630 -3.0257 1.0172 39 1 9.5889 -1.9975 1.8850 40 1 12.3899 -1.3410 2.9315 41 1 9.0325 -5.9303 2.7457 42 1 7.8051 -4.6396 2.9262 43 1 6.9013 -5.2579 -0.5464 44 1 6.9661 -6.4592 0.7651 45 1 6.3514 -4.8202 1.0890 46 1 10.5355 -5.4999 0.4843 47 1 9.3790 -6.8511 0.4172 48 1 9.4482 -5.6717 -0.9144 49 1 6.9229 1.0719 -0.2701 50 1 5.8815 0.2916 -1.4845 51 1 4.7133 2.2660 -0.7032 52 1 4.9990 1.8266 1.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974726202.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:51 Heat of formation + Delta-G solvation = 39.621322 kcal Electronic energy + Delta-G solvation = -31617.497563 eV Core-core repulsion = 27618.087554 eV Total energy + Delta-G solvation = -3999.410008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.50974 -40.01379 -38.25656 -36.31701 -33.98628 -33.54532 -32.87056 -31.69611 -30.71335 -29.24789 -28.13620 -27.34712 -26.67734 -25.63361 -24.35191 -23.72287 -22.66407 -20.77164 -20.27973 -19.82646 -19.26630 -18.68342 -17.05861 -16.96455 -16.66299 -16.07413 -15.70050 -15.25030 -14.64189 -14.44988 -14.35401 -14.09937 -13.93818 -13.87490 -13.77170 -13.61075 -13.27286 -13.07746 -12.67038 -12.60106 -12.44800 -12.09730 -11.99071 -11.97580 -11.81800 -11.67836 -11.42817 -11.36530 -11.27326 -11.07974 -10.99696 -10.77655 -10.41540 -10.28401 -10.06182 -10.00961 -9.89243 -9.65226 -9.64463 -9.51418 -8.64724 -8.48141 -8.33195 -6.83944 -5.70445 -3.05109 1.88284 2.59987 2.85154 2.94295 3.37406 3.39679 3.44033 3.45399 4.04331 4.27015 4.38469 4.44181 4.49374 4.76616 4.88820 4.91174 4.95142 4.99035 5.08024 5.18145 5.25262 5.28619 5.30109 5.46694 5.50874 5.52647 5.53889 5.62531 5.68933 5.73838 5.79641 5.86171 5.90527 5.92455 6.02433 6.15872 6.18777 6.19840 6.24062 6.37769 6.56992 6.60566 6.64961 6.66912 6.71404 6.94088 7.01598 7.53532 7.61707 7.79143 7.89137 7.99147 8.24625 8.52825 9.21082 9.81753 10.47102 11.40110 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.002724 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.307617 B =10274.754076 C =11075.870977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.007 4.007 3 C -0.056 4.056 4 N -0.454 5.454 5 C 0.215 3.785 6 N -0.486 5.486 7 C -0.022 4.022 8 C -0.113 4.113 9 H 0.104 0.896 10 C 0.521 3.479 11 O -0.537 6.537 12 N -0.706 5.706 13 C 0.123 3.877 14 H 0.088 0.912 15 C 0.176 3.824 16 N -0.603 5.603 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.143 3.857 26 C -0.089 4.089 27 C -0.131 4.131 28 C -0.126 4.126 29 C -0.115 4.115 30 C 0.103 3.897 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.172 0.828 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.396 0.604 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.253 0.747 41 H 0.041 0.959 42 H 0.016 0.984 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.104 0.896 50 H 0.081 0.919 51 H 0.094 0.906 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 3.838 -7.688 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.136 4.136 3 C -0.189 4.189 4 N -0.137 5.137 5 C -0.047 4.047 6 N -0.205 5.205 7 C -0.062 4.062 8 C -0.135 4.135 9 H 0.122 0.878 10 C 0.306 3.694 11 O -0.413 6.413 12 N -0.356 5.356 13 C 0.019 3.981 14 H 0.106 0.894 15 C 0.051 3.949 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.017 3.983 26 C -0.091 4.091 27 C -0.189 4.189 28 C -0.184 4.184 29 C -0.152 4.152 30 C -0.019 4.019 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.190 0.810 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.231 0.769 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.122 0.878 50 H 0.100 0.900 51 H 0.112 0.888 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.521 3.598 -8.152 19.657 hybrid contribution 0.626 0.954 1.227 1.676 sum -16.896 4.552 -6.925 18.819 Atomic orbital electron populations 1.19988 0.87776 1.02471 1.01964 1.20789 0.96428 0.88352 1.08051 1.22290 0.82912 1.00341 1.13367 1.45399 1.06622 1.07475 1.54199 1.23082 0.94628 0.81618 1.05410 1.69942 0.99630 1.30402 1.20535 1.20126 0.86146 0.95513 1.04372 1.21448 0.93395 0.95996 1.02688 0.87813 1.20042 0.87356 0.81374 0.80658 1.90714 1.46104 1.67909 1.36621 1.46021 1.22059 1.21570 1.45968 1.22503 0.85066 0.89792 1.00779 0.89410 1.21510 0.93791 0.93211 0.86400 1.44427 1.35770 1.29599 1.23105 1.18975 1.08565 1.10271 0.97940 0.90553 1.24801 0.99406 0.97736 0.98423 1.69952 1.36216 1.17125 1.33362 0.86226 0.80625 0.77027 0.82009 1.21179 1.21661 1.21279 1.21720 0.91790 0.93724 0.91066 1.22093 0.95237 0.93998 0.97778 1.21672 0.95493 1.00768 1.00931 1.21596 0.99603 0.98376 0.98794 1.21720 0.98118 0.94622 1.00787 1.22095 0.81895 0.94410 1.03519 0.91653 0.91552 0.91277 0.81033 0.88187 0.88690 0.76899 0.92887 0.93472 0.93681 0.94104 0.96675 0.92781 0.92615 0.93028 0.91230 0.92874 0.93336 0.87779 0.89982 0.88813 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.42 36.01 0.38 -0.17 16 2 C -0.01 -0.08 7.10 -82.72 -0.59 -0.67 16 3 C -0.06 -0.57 11.55 -16.76 -0.19 -0.76 16 4 N -0.45 -4.83 3.13 -113.74 -0.36 -5.18 16 5 C 0.22 2.66 7.65 -155.25 -1.19 1.47 16 6 N -0.49 -6.75 11.24 -6.88 -0.08 -6.83 16 7 C -0.02 -0.24 5.46 -27.50 -0.15 -0.39 16 8 C -0.11 -1.28 2.55 -91.49 -0.23 -1.51 16 9 H 0.10 1.13 8.12 -51.93 -0.42 0.71 16 10 C 0.52 7.94 7.13 -10.99 -0.08 7.87 16 11 O -0.54 -10.23 15.51 5.56 0.09 -10.14 16 12 N -0.71 -10.78 4.41 -52.03 -0.23 -11.01 16 13 C 0.12 2.23 2.54 -66.09 -0.17 2.07 16 14 H 0.09 1.66 7.53 -51.93 -0.39 1.27 16 15 C 0.18 4.20 4.80 -3.06 -0.01 4.18 16 16 N -0.60 -14.68 3.38 -169.77 -0.57 -15.25 16 17 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.97 10.31 55.49 0.57 -26.40 16 21 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.14 2.76 6.16 -2.27 -0.01 2.74 16 26 C -0.09 -1.43 0.84 -152.10 -0.13 -1.55 16 27 C -0.13 -1.62 8.23 37.15 0.31 -1.31 16 28 C -0.13 -1.96 8.58 37.16 0.32 -1.64 16 29 C -0.11 -1.16 4.67 -26.51 -0.12 -1.28 16 30 C 0.10 0.84 6.98 -3.91 -0.03 0.82 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.17 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.10 0.98 7.94 -51.93 -0.41 0.56 16 36 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 37 H 0.40 5.27 6.72 -40.82 -0.27 4.99 16 38 H 0.05 1.44 7.38 -51.93 -0.38 1.06 16 39 H 0.05 1.29 7.41 -51.93 -0.38 0.90 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 42 H 0.02 0.29 8.00 -51.93 -0.42 -0.13 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.58 6.44 -51.93 -0.33 0.25 16 46 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 1.12 7.79 -51.93 -0.40 0.72 16 50 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 51 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 406.29 15.07 6.12 6.12 Total: -1.00 -34.03 406.29 -10.50 -44.53 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -8.87 Total: 4.01 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -2.16 Total: 3.17 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.67 Total: -64.67 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.03 -10.50 -44.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974726202.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.152 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds