Wall clock time and date at job start Wed Apr 1 2020 04:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34855 * 125.95790 * 2 1 4 4 N 1.36318 * 106.68798 * 179.97438 * 3 2 1 5 5 C 1.35417 * 107.39447 * 0.04405 * 4 3 2 6 6 N 1.30089 * 108.63552 * 359.94199 * 5 4 3 7 7 C 1.51049 * 123.98371 * 179.86667 * 5 4 3 8 8 C 1.53399 * 108.19922 * 344.01912 * 7 5 4 9 9 H 1.09006 * 109.54720 * 288.89106 * 8 7 5 10 10 C 1.50695 * 109.51112 * 168.77873 * 8 7 5 11 11 O 1.21281 * 120.00072 * 240.24045 * 10 8 7 12 12 N 1.34782 * 120.00475 * 60.23344 * 10 8 7 13 13 C 1.46496 * 120.00326 * 180.02562 * 12 10 8 14 14 H 1.09002 * 110.63746 * 328.14027 * 13 12 10 15 15 C 1.54325 * 110.87283 * 91.38814 * 13 12 10 16 16 N 1.47290 * 107.30599 * 96.25220 * 15 13 12 17 17 C 1.36938 * 125.79079 * 178.92205 * 16 15 13 18 18 H 1.08005 * 119.99558 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00146 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00086 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47294 * 89.99594 * 21 19 17 23 23 H 1.48503 * 109.46797 * 209.99511 * 21 19 17 24 24 H 1.48500 * 109.47035 * 329.99310 * 21 19 17 25 25 C 1.47425 * 108.55742 * 358.92448 * 16 15 13 26 26 C 1.54908 * 104.92961 * 24.15407 * 25 16 15 27 27 C 1.53007 * 111.00481 * 81.01010 * 26 25 16 28 28 C 1.52999 * 111.00368 * 204.85960 * 26 25 16 29 29 C 1.53148 * 109.24090 * 48.84471 * 8 7 5 30 30 C 1.46475 * 127.77896 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46918 * 269.99348 * 1 2 3 32 32 H 1.08995 * 109.47456 * 29.99805 * 1 2 3 33 33 H 1.08997 * 109.46968 * 149.99917 * 1 2 3 34 34 H 1.08003 * 126.66326 * 359.97438 * 3 2 1 35 35 H 1.08994 * 109.71919 * 224.33728 * 7 5 4 36 36 H 1.09002 * 109.71772 * 103.68932 * 7 5 4 37 37 H 0.97000 * 119.99814 * 0.02562 * 12 10 8 38 38 H 1.09004 * 109.88239 * 215.66016 * 15 13 12 39 39 H 1.08995 * 109.88239 * 336.66938 * 15 13 12 40 40 H 0.96999 * 120.00175 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.36696 * 265.26054 * 25 16 15 42 42 H 1.08995 * 110.36608 * 143.04891 * 25 16 15 43 43 H 1.09001 * 109.46742 * 61.44802 * 27 26 25 44 44 H 1.08996 * 109.47279 * 181.45530 * 27 26 25 45 45 H 1.09002 * 109.47053 * 301.45273 * 27 26 25 46 46 H 1.09001 * 109.47276 * 58.55057 * 28 26 25 47 47 H 1.09003 * 109.46690 * 178.54597 * 28 26 25 48 48 H 1.08998 * 109.47248 * 298.54758 * 28 26 25 49 49 H 1.09001 * 109.46453 * 50.53280 * 29 8 7 50 50 H 1.08998 * 109.46441 * 170.51412 * 29 8 7 51 51 H 1.09000 * 109.57772 * 43.12412 * 30 4 3 52 52 H 1.08998 * 109.69544 * 282.78496 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0916 0.0000 4 7 3.5857 0.6417 0.0006 5 6 3.5414 -0.7117 -0.0001 6 7 2.2957 -1.0869 0.0002 7 6 4.7655 -1.5966 -0.0026 8 6 5.9738 -0.7416 -0.4055 9 1 5.9051 -0.4887 -1.4635 10 6 7.2431 -1.5140 -0.1541 11 8 8.0743 -1.0808 0.6156 12 7 7.4548 -2.6863 -0.7846 13 6 8.6885 -3.4374 -0.5399 14 1 9.5157 -2.7595 -0.3295 15 6 8.4997 -4.4435 0.6150 16 7 8.1803 -5.7485 0.0114 17 6 7.9597 -6.9145 0.6947 18 1 7.7316 -7.8218 0.1550 19 6 8.0292 -6.9303 2.0810 20 7 8.3077 -5.8247 2.7386 21 14 7.7290 -8.5211 3.0131 22 1 9.0151 -9.2425 3.1881 23 1 7.1494 -8.2125 4.3450 24 1 6.7839 -9.3728 2.2472 25 6 8.1375 -5.5899 -1.4537 26 6 9.0225 -4.3529 -1.7472 27 6 10.5055 -4.7292 -1.7564 28 6 8.6189 -3.6904 -3.0660 29 6 5.9833 0.5432 0.4280 30 6 4.8148 1.4384 0.0013 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9763 2.1223 -0.0004 35 1 4.6325 -2.4064 -0.7199 36 1 4.9231 -2.0094 0.9938 37 1 6.7902 -3.0326 -1.4005 38 1 9.4196 -4.5191 1.1949 39 1 7.6816 -4.1201 1.2584 40 1 8.3566 -5.8358 3.7073 41 1 7.1148 -5.4123 -1.7864 42 1 8.5467 -6.4738 -1.9430 43 1 10.6902 -5.4593 -2.5444 44 1 11.1054 -3.8377 -1.9392 45 1 10.7774 -5.1586 -0.7921 46 1 7.5713 -3.3932 -3.0177 47 1 9.2389 -2.8099 -3.2348 48 1 8.7591 -4.3960 -3.8849 49 1 5.8820 0.2920 1.4838 50 1 6.9229 1.0723 0.2691 51 1 4.7132 2.2660 0.7034 52 1 5.0000 1.8290 -0.9993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974726203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:54 Heat of formation + Delta-G solvation = 40.835777 kcal Electronic energy + Delta-G solvation = -31748.819249 eV Core-core repulsion = 27749.461904 eV Total energy + Delta-G solvation = -3999.357346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.44356 -40.01753 -38.26520 -36.29522 -33.95573 -33.50990 -32.85547 -31.63880 -30.68888 -29.19981 -28.15093 -27.30793 -26.67457 -25.62214 -24.28734 -23.70103 -22.64648 -20.71608 -20.26532 -19.83783 -19.22316 -18.66211 -17.01477 -16.96140 -16.65843 -16.03675 -15.71489 -15.20248 -14.63864 -14.36770 -14.32704 -14.04569 -13.93116 -13.82951 -13.74040 -13.59105 -13.26736 -13.03605 -12.66062 -12.50911 -12.39070 -12.06527 -12.02159 -11.96064 -11.77630 -11.66938 -11.42645 -11.33444 -11.25672 -11.07954 -10.97183 -10.76894 -10.39442 -10.24763 -10.02495 -9.95825 -9.87585 -9.62999 -9.58399 -9.52267 -8.63058 -8.47846 -8.25764 -6.81321 -5.67876 -3.02208 1.94311 2.64452 2.82966 3.03171 3.38953 3.42508 3.47625 3.49774 4.10314 4.29432 4.41216 4.46953 4.52453 4.79192 4.90542 4.91276 4.96410 5.00891 5.13569 5.22889 5.25313 5.28784 5.29698 5.54953 5.55902 5.58476 5.61464 5.63085 5.71823 5.79999 5.82960 5.89466 5.94490 5.95216 6.01275 6.14566 6.18698 6.22101 6.24337 6.38390 6.56567 6.60971 6.66825 6.70642 6.72215 6.93719 7.08364 7.55187 7.62430 7.80400 7.89043 8.08420 8.26380 8.51549 9.23257 9.84252 10.49542 11.43038 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010371 B = 0.003196 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.140417 B = 8758.542165 C =10166.823818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.006 4.006 3 C -0.059 4.059 4 N -0.456 5.456 5 C 0.219 3.781 6 N -0.484 5.484 7 C -0.026 4.026 8 C -0.110 4.110 9 H 0.100 0.900 10 C 0.520 3.480 11 O -0.537 6.537 12 N -0.705 5.705 13 C 0.123 3.877 14 H 0.089 0.911 15 C 0.175 3.825 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.143 3.857 26 C -0.090 4.090 27 C -0.125 4.125 28 C -0.131 4.131 29 C -0.116 4.116 30 C 0.105 3.895 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.172 0.828 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.396 0.604 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.252 0.748 41 H 0.016 0.984 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.084 0.916 50 H 0.101 0.899 51 H 0.093 0.907 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 16.400 -10.993 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C -0.192 4.192 4 N -0.140 5.140 5 C -0.043 4.043 6 N -0.203 5.203 7 C -0.065 4.065 8 C -0.132 4.132 9 H 0.118 0.882 10 C 0.305 3.695 11 O -0.414 6.414 12 N -0.356 5.356 13 C 0.018 3.982 14 H 0.107 0.893 15 C 0.050 3.950 16 N -0.328 5.328 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.017 3.983 26 C -0.091 4.091 27 C -0.183 4.183 28 C -0.188 4.188 29 C -0.154 4.154 30 C -0.017 4.017 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.189 0.811 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.232 0.768 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.103 0.897 50 H 0.119 0.881 51 H 0.111 0.889 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.449 15.929 -10.194 19.981 hybrid contribution -0.284 -0.084 0.326 0.440 sum -6.733 15.845 -9.868 19.844 Atomic orbital electron populations 1.19989 0.87804 1.02401 1.02042 1.20806 0.96451 0.88355 1.07859 1.22255 0.82931 1.00249 1.13750 1.45391 1.06526 1.07450 1.54605 1.23127 0.94692 0.81462 1.05042 1.69981 0.99672 1.30306 1.20333 1.20156 0.85832 0.95299 1.05182 1.21417 0.93659 0.96009 1.02135 0.88178 1.20080 0.87434 0.81382 0.80604 1.90711 1.46283 1.68996 1.35453 1.46029 1.22236 1.21336 1.45979 1.22490 0.85679 0.93253 0.96766 0.89285 1.21553 1.00762 0.82371 0.90336 1.44475 1.83099 1.06151 0.99102 1.19011 1.41270 0.86539 0.88887 0.90498 1.24788 1.01941 0.97205 0.96332 1.69949 1.54782 1.25112 1.06740 0.86154 0.77713 0.82632 0.79460 1.21684 1.21734 1.20739 1.21628 0.95115 0.94442 0.87137 1.22015 0.96937 0.96569 0.93595 1.21593 0.93511 1.00351 1.02842 1.21676 1.00611 1.00017 0.96540 1.21724 0.97838 0.94495 1.01300 1.22040 0.82092 0.94421 1.03192 0.91600 0.91603 0.91247 0.81079 0.88055 0.88158 0.76844 0.92880 0.93357 0.93741 0.96689 0.94143 0.92836 0.93443 0.91265 0.93062 0.92940 0.92657 0.89729 0.88058 0.88914 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.42 36.01 0.38 -0.24 16 2 C -0.01 -0.07 7.10 -82.72 -0.59 -0.66 16 3 C -0.06 -0.64 11.55 -16.76 -0.19 -0.83 16 4 N -0.46 -5.11 3.13 -113.75 -0.36 -5.47 16 5 C 0.22 3.01 7.65 -155.24 -1.19 1.82 16 6 N -0.48 -7.52 11.24 -6.88 -0.08 -7.60 16 7 C -0.03 -0.33 5.47 -27.51 -0.15 -0.48 16 8 C -0.11 -1.24 2.55 -91.49 -0.23 -1.47 16 9 H 0.10 0.91 8.12 -51.93 -0.42 0.49 16 10 C 0.52 7.87 7.13 -10.99 -0.08 7.79 16 11 O -0.54 -10.15 15.47 5.56 0.09 -10.07 16 12 N -0.71 -10.73 4.33 -52.03 -0.23 -10.96 16 13 C 0.12 2.22 2.59 -66.10 -0.17 2.05 16 14 H 0.09 1.68 7.45 -51.93 -0.39 1.30 16 15 C 0.18 4.17 4.75 -2.92 -0.01 4.15 16 16 N -0.60 -14.67 3.39 -169.86 -0.58 -15.25 16 17 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 18 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 20 N -0.92 -27.10 10.33 55.49 0.57 -26.53 16 21 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.14 2.75 6.12 -2.53 -0.02 2.74 16 26 C -0.09 -1.42 0.83 -152.36 -0.13 -1.55 16 27 C -0.13 -1.94 8.61 37.16 0.32 -1.62 16 28 C -0.13 -1.60 8.35 37.16 0.31 -1.29 16 29 C -0.12 -1.16 4.67 -26.52 -0.12 -1.29 16 30 C 0.10 0.84 6.98 -3.92 -0.03 0.81 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 35 H 0.10 1.23 7.95 -51.93 -0.41 0.82 16 36 H 0.10 1.48 8.11 -51.93 -0.42 1.06 16 37 H 0.40 5.27 6.77 -40.82 -0.28 5.00 16 38 H 0.05 1.44 7.39 -51.93 -0.38 1.06 16 39 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 40 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.02 0.29 8.04 -51.93 -0.42 -0.13 16 42 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.27 7.81 -51.93 -0.41 0.87 16 46 H 0.05 0.58 6.26 -51.93 -0.33 0.25 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 50 H 0.10 0.97 7.79 -51.93 -0.40 0.56 16 51 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 406.07 15.07 6.12 6.12 Total: -1.00 -34.35 406.07 -10.49 -44.84 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -8.85 Total: 4.41 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.15 Total: 3.27 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.66 Total: -65.80 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.35 -10.49 -44.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974726203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.676 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds