Wall clock time and date at job start Wed Apr 1 2020 04:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34858 * 125.96736 * 2 1 4 4 N 1.36313 * 106.68844 * 180.02562 * 3 2 1 5 5 C 1.35421 * 107.40124 * 0.03206 * 4 3 2 6 6 N 1.30096 * 108.62638 * 0.19451 * 5 4 3 7 7 C 1.51042 * 123.98399 * 179.97438 * 5 4 3 8 8 C 1.53406 * 108.20869 * 344.04118 * 7 5 4 9 9 H 1.08998 * 109.55886 * 288.86674 * 8 7 5 10 10 C 1.50698 * 109.50767 * 168.74404 * 8 7 5 11 11 O 1.21281 * 120.00203 * 240.24032 * 10 8 7 12 12 N 1.34780 * 119.99676 * 60.23904 * 10 8 7 13 13 C 1.46504 * 119.99682 * 179.97438 * 12 10 8 14 14 H 1.09007 * 110.63953 * 31.86209 * 13 12 10 15 15 C 1.54321 * 110.72386 * 268.52673 * 13 12 10 16 16 N 1.47020 * 107.26910 * 263.83073 * 15 13 12 17 17 C 1.36939 * 125.64704 * 181.02155 * 16 15 13 18 18 H 1.08001 * 119.99819 * 173.93919 * 17 16 15 19 19 C 1.38806 * 120.00118 * 353.94269 * 17 16 15 20 20 N 1.31616 * 119.99989 * 6.82828 * 19 17 16 21 21 Si 1.86804 * 120.00146 * 186.82721 * 19 17 16 22 22 H 1.48499 * 109.46698 * 94.98743 * 21 19 17 23 23 H 1.48496 * 109.47259 * 214.98737 * 21 19 17 24 24 H 1.48501 * 109.46859 * 334.98603 * 21 19 17 25 25 C 1.47424 * 108.70420 * 1.05851 * 16 15 13 26 26 C 1.54907 * 104.83340 * 335.87101 * 25 16 15 27 27 C 1.52995 * 111.00553 * 278.93665 * 26 25 16 28 28 C 1.52997 * 111.03777 * 155.09747 * 26 25 16 29 29 C 1.53150 * 109.23623 * 48.81913 * 8 7 5 30 30 C 1.46469 * 127.77489 * 180.02562 * 4 3 2 31 31 H 1.08996 * 109.47427 * 89.99808 * 1 2 3 32 32 H 1.09002 * 109.47350 * 210.00280 * 1 2 3 33 33 H 1.09003 * 109.47138 * 330.00122 * 1 2 3 34 34 H 1.07998 * 126.64975 * 0.04573 * 3 2 1 35 35 H 1.08992 * 109.71710 * 103.73726 * 7 5 4 36 36 H 1.08998 * 109.71530 * 224.38647 * 7 5 4 37 37 H 0.96997 * 120.00545 * 0.02562 * 12 10 8 38 38 H 1.09004 * 109.87950 * 23.24786 * 15 13 12 39 39 H 1.08995 * 109.88008 * 144.41404 * 15 13 12 40 40 H 0.96999 * 120.00082 * 179.97438 * 20 19 17 41 41 H 1.09002 * 110.36845 * 217.03420 * 25 16 15 42 42 H 1.09004 * 110.36821 * 94.71249 * 25 16 15 43 43 H 1.08998 * 109.47224 * 172.19120 * 27 26 25 44 44 H 1.09003 * 109.47261 * 292.19563 * 27 26 25 45 45 H 1.08998 * 109.47285 * 52.19408 * 27 26 25 46 46 H 1.09001 * 109.47391 * 307.78137 * 28 26 25 47 47 H 1.09001 * 109.47205 * 67.78739 * 28 26 25 48 48 H 1.09006 * 109.47057 * 187.78406 * 28 26 25 49 49 H 1.09000 * 109.46438 * 170.50834 * 29 8 7 50 50 H 1.09001 * 109.47176 * 50.51939 * 29 8 7 51 51 H 1.09007 * 109.58273 * 282.59527 * 30 4 3 52 52 H 1.09007 * 109.58928 * 43.00709 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6414 -0.0006 5 6 3.5413 -0.7121 -0.0016 6 7 2.2956 -1.0870 -0.0059 7 6 4.7654 -1.5969 -0.0031 8 6 5.9745 -0.7419 -0.4039 9 1 5.9077 -0.4887 -1.4619 10 6 7.2433 -1.5145 -0.1504 11 8 8.0732 -1.0815 0.6208 12 7 7.4558 -2.6867 -0.7808 13 6 8.6896 -3.4374 -0.5349 14 1 9.0368 -3.2820 0.4866 15 6 9.7808 -3.0433 -1.5524 16 7 9.7446 -4.0349 -2.6373 17 6 10.5704 -4.0534 -3.7295 18 1 10.5298 -4.8801 -4.4232 19 6 11.4599 -3.0097 -3.9448 20 7 11.6062 -2.0712 -3.0338 21 14 12.4491 -2.9371 -5.5278 22 1 11.7475 -2.0728 -6.5106 23 1 13.7942 -2.3749 -5.2456 24 1 12.5918 -4.3060 -6.0855 25 6 8.6713 -5.0054 -2.3551 26 6 8.4787 -4.9481 -0.8191 27 6 9.5334 -5.7934 -0.1022 28 6 7.0673 -5.3884 -0.4258 29 6 5.9826 0.5427 0.4300 30 6 4.8149 1.4380 -0.0003 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.9764 2.1221 0.0007 35 1 4.9213 -2.0106 0.9931 36 1 4.6334 -2.4060 -0.7214 37 1 6.7923 -3.0328 -1.3979 38 1 9.5744 -2.0499 -1.9511 39 1 10.7585 -3.0560 -1.0710 40 1 12.2280 -1.3421 -3.1841 41 1 8.9745 -6.0063 -2.6623 42 1 7.7525 -4.7136 -2.8638 43 1 9.4633 -5.6269 0.9727 44 1 9.3623 -6.8480 -0.3185 45 1 10.5260 -5.5076 -0.4501 46 1 6.3359 -4.8194 -0.9998 47 1 6.9465 -6.4512 -0.6354 48 1 6.9137 -5.2083 0.6383 49 1 6.9226 1.0717 0.2728 50 1 5.8794 0.2913 1.4856 51 1 4.9994 1.8253 -1.0024 52 1 4.7133 2.2665 0.7008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974726205.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:02 Heat of formation + Delta-G solvation = 39.057159 kcal Electronic energy + Delta-G solvation = -31623.889957 eV Core-core repulsion = 27624.455484 eV Total energy + Delta-G solvation = -3999.434472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.50916 -40.02357 -38.28063 -36.32244 -33.98391 -33.54837 -32.88587 -31.69699 -30.72139 -29.24961 -28.14282 -27.34840 -26.68257 -25.64637 -24.35295 -23.72207 -22.66630 -20.76944 -20.27735 -19.85324 -19.26839 -18.68336 -17.06123 -16.96931 -16.67540 -16.08124 -15.70422 -15.24963 -14.65281 -14.44750 -14.35155 -14.10120 -13.94307 -13.87333 -13.77218 -13.62531 -13.27034 -13.07280 -12.67192 -12.60946 -12.44403 -12.10342 -11.99765 -11.97629 -11.81889 -11.69137 -11.43959 -11.37234 -11.27980 -11.08616 -10.99098 -10.80226 -10.40717 -10.26833 -10.06262 -10.02810 -9.89691 -9.65974 -9.64520 -9.52844 -8.64417 -8.47813 -8.33180 -6.83900 -5.72704 -3.06140 1.88200 2.59884 2.84211 2.94179 3.36909 3.38832 3.44105 3.46195 4.04153 4.26655 4.38045 4.43967 4.48839 4.76465 4.88606 4.91287 4.95274 4.98801 5.07979 5.17908 5.24766 5.28488 5.30757 5.46533 5.49723 5.51042 5.54301 5.63188 5.68621 5.73634 5.80336 5.86122 5.90078 5.92747 6.02200 6.15442 6.18639 6.19688 6.24027 6.37560 6.56529 6.60679 6.64921 6.66733 6.70848 6.93579 7.01522 7.51063 7.63317 7.78678 7.87918 7.99096 8.23613 8.51889 9.19942 9.80896 10.46684 11.38402 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.002750 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.710414 B =10179.151104 C =10961.443445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.007 4.007 3 C -0.056 4.056 4 N -0.454 5.454 5 C 0.215 3.785 6 N -0.485 5.485 7 C -0.022 4.022 8 C -0.113 4.113 9 H 0.104 0.896 10 C 0.521 3.479 11 O -0.538 6.538 12 N -0.705 5.705 13 C 0.123 3.877 14 H 0.090 0.910 15 C 0.175 3.825 16 N -0.603 5.603 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.143 3.857 26 C -0.090 4.090 27 C -0.126 4.126 28 C -0.131 4.131 29 C -0.114 4.114 30 C 0.103 3.897 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.172 0.828 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.396 0.604 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.252 0.748 41 H 0.040 0.960 42 H 0.016 0.984 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.104 0.896 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.928 4.077 8.132 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.136 4.136 3 C -0.189 4.189 4 N -0.137 5.137 5 C -0.047 4.047 6 N -0.205 5.205 7 C -0.061 4.061 8 C -0.135 4.135 9 H 0.122 0.878 10 C 0.306 3.694 11 O -0.415 6.415 12 N -0.355 5.355 13 C 0.018 3.982 14 H 0.108 0.892 15 C 0.049 3.951 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.564 5.564 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.017 3.983 26 C -0.091 4.091 27 C -0.184 4.184 28 C -0.188 4.188 29 C -0.152 4.152 30 C -0.019 4.019 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.190 0.810 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.231 0.769 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.122 0.878 50 H 0.100 0.900 51 H 0.106 0.894 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.273 3.822 8.589 19.665 hybrid contribution 0.544 0.987 -1.314 1.731 sum -16.729 4.809 7.275 18.865 Atomic orbital electron populations 1.19986 0.87776 1.02417 1.02021 1.20790 0.96428 0.88351 1.08041 1.22288 0.82913 1.00339 1.13375 1.45397 1.06619 1.07475 1.54207 1.23085 0.94628 0.81612 1.05411 1.69946 0.99629 1.30397 1.20530 1.20121 0.86129 0.95509 1.04385 1.21450 0.93394 0.95997 1.02701 0.87805 1.20047 0.87321 0.81353 0.80673 1.90711 1.46316 1.67938 1.36506 1.46004 1.22220 1.21750 1.45553 1.22499 0.85081 0.89693 1.00884 0.89243 1.21522 0.93911 0.93117 0.86511 1.44438 1.36024 1.28828 1.23610 1.19027 1.13196 1.04142 0.99407 0.90475 1.24820 0.99962 0.97225 0.98268 1.69974 1.39223 1.14263 1.32945 0.86152 0.79259 0.77521 0.83162 1.21726 1.21811 1.20654 1.21639 0.91803 0.93991 0.90885 1.22017 0.95279 0.94104 0.97717 1.21600 0.99517 0.98456 0.98800 1.21676 0.95534 1.00801 1.00834 1.21726 0.98119 0.94613 1.00779 1.22103 0.81901 0.94417 1.03506 0.91603 0.91304 0.91570 0.81034 0.88681 0.88177 0.76864 0.93160 0.93238 0.93740 0.94131 0.96631 0.93336 0.92880 0.91262 0.93011 0.92649 0.92820 0.87802 0.89967 0.89387 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.42 36.00 0.38 -0.17 16 2 C -0.01 -0.08 7.10 -82.72 -0.59 -0.67 16 3 C -0.06 -0.57 11.55 -16.76 -0.19 -0.76 16 4 N -0.45 -4.83 3.13 -113.72 -0.36 -5.18 16 5 C 0.22 2.66 7.65 -155.24 -1.19 1.47 16 6 N -0.49 -6.75 11.24 -6.88 -0.08 -6.83 16 7 C -0.02 -0.24 5.47 -27.51 -0.15 -0.39 16 8 C -0.11 -1.28 2.55 -91.48 -0.23 -1.51 16 9 H 0.10 1.13 8.12 -51.93 -0.42 0.71 16 10 C 0.52 7.91 7.13 -10.98 -0.08 7.83 16 11 O -0.54 -10.17 15.47 5.56 0.09 -10.08 16 12 N -0.71 -10.77 4.36 -52.03 -0.23 -10.99 16 13 C 0.12 2.23 2.59 -66.09 -0.17 2.06 16 14 H 0.09 1.69 7.45 -51.93 -0.39 1.31 16 15 C 0.17 4.14 4.80 -3.07 -0.01 4.13 16 16 N -0.60 -14.63 3.38 -170.08 -0.57 -15.20 16 17 C -0.23 -6.23 10.26 -15.06 -0.15 -6.38 16 18 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 20 N -0.92 -26.83 10.36 55.49 0.58 -26.25 16 21 Si 0.91 21.95 29.56 -169.99 -5.02 16.93 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.14 2.75 6.12 -2.53 -0.02 2.73 16 26 C -0.09 -1.43 0.83 -152.36 -0.13 -1.55 16 27 C -0.13 -1.95 8.57 37.15 0.32 -1.64 16 28 C -0.13 -1.62 8.22 37.16 0.31 -1.32 16 29 C -0.11 -1.15 4.67 -26.49 -0.12 -1.27 16 30 C 0.10 0.84 6.98 -3.90 -0.03 0.81 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 36 H 0.10 0.98 7.95 -51.93 -0.41 0.57 16 37 H 0.40 5.30 6.84 -40.82 -0.28 5.02 16 38 H 0.05 1.37 7.27 -51.93 -0.38 0.99 16 39 H 0.05 1.34 7.55 -51.93 -0.39 0.95 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 42 H 0.02 0.30 7.99 -51.93 -0.41 -0.12 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16 46 H 0.05 0.59 6.48 -51.93 -0.34 0.25 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.10 1.11 7.79 -51.93 -0.40 0.71 16 50 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 51 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 52 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 406.34 15.07 6.12 6.12 Total: -1.00 -33.93 406.34 -10.51 -44.44 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.87 Total: 3.95 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.16 Total: 3.11 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -0.66 Total: -64.47 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.93 -10.51 -44.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974726205.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.493 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds