Wall clock time and date at job start Wed Apr 1 2020 04:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34858 * 125.96736 * 2 1 4 4 N 1.36313 * 106.68844 * 180.02562 * 3 2 1 5 5 C 1.35421 * 107.40124 * 0.03206 * 4 3 2 6 6 N 1.30096 * 108.62638 * 0.19451 * 5 4 3 7 7 C 1.51042 * 123.98399 * 179.97438 * 5 4 3 8 8 C 1.53406 * 108.20869 * 344.04118 * 7 5 4 9 9 H 1.08998 * 109.55886 * 288.86674 * 8 7 5 10 10 C 1.50698 * 109.50767 * 168.74404 * 8 7 5 11 11 O 1.21281 * 120.00203 * 240.24032 * 10 8 7 12 12 N 1.34780 * 119.99676 * 60.23904 * 10 8 7 13 13 C 1.46504 * 119.99682 * 179.97438 * 12 10 8 14 14 H 1.09007 * 110.63953 * 31.86209 * 13 12 10 15 15 C 1.54321 * 110.72386 * 268.52673 * 13 12 10 16 16 N 1.47020 * 107.26910 * 263.83073 * 15 13 12 17 17 C 1.36939 * 125.64704 * 181.02155 * 16 15 13 18 18 H 1.08001 * 119.99819 * 173.93919 * 17 16 15 19 19 C 1.38806 * 120.00118 * 353.94269 * 17 16 15 20 20 N 1.31616 * 119.99989 * 6.82828 * 19 17 16 21 21 Si 1.86804 * 120.00146 * 186.82721 * 19 17 16 22 22 H 1.48499 * 109.46698 * 94.98743 * 21 19 17 23 23 H 1.48496 * 109.47259 * 214.98737 * 21 19 17 24 24 H 1.48501 * 109.46859 * 334.98603 * 21 19 17 25 25 C 1.47424 * 108.70420 * 1.05851 * 16 15 13 26 26 C 1.54907 * 104.83340 * 335.87101 * 25 16 15 27 27 C 1.52995 * 111.00553 * 278.93665 * 26 25 16 28 28 C 1.52997 * 111.03777 * 155.09747 * 26 25 16 29 29 C 1.53150 * 109.23623 * 48.81913 * 8 7 5 30 30 C 1.46469 * 127.77489 * 180.02562 * 4 3 2 31 31 H 1.08996 * 109.47427 * 89.99808 * 1 2 3 32 32 H 1.09002 * 109.47350 * 210.00280 * 1 2 3 33 33 H 1.09003 * 109.47138 * 330.00122 * 1 2 3 34 34 H 1.07998 * 126.64975 * 0.04573 * 3 2 1 35 35 H 1.08992 * 109.71710 * 103.73726 * 7 5 4 36 36 H 1.08998 * 109.71530 * 224.38647 * 7 5 4 37 37 H 0.96997 * 120.00545 * 0.02562 * 12 10 8 38 38 H 1.09004 * 109.87950 * 23.24786 * 15 13 12 39 39 H 1.08995 * 109.88008 * 144.41404 * 15 13 12 40 40 H 0.96999 * 120.00082 * 179.97438 * 20 19 17 41 41 H 1.09002 * 110.36845 * 217.03420 * 25 16 15 42 42 H 1.09004 * 110.36821 * 94.71249 * 25 16 15 43 43 H 1.08998 * 109.47224 * 172.19120 * 27 26 25 44 44 H 1.09003 * 109.47261 * 292.19563 * 27 26 25 45 45 H 1.08998 * 109.47285 * 52.19408 * 27 26 25 46 46 H 1.09001 * 109.47391 * 307.78137 * 28 26 25 47 47 H 1.09001 * 109.47205 * 67.78739 * 28 26 25 48 48 H 1.09006 * 109.47057 * 187.78406 * 28 26 25 49 49 H 1.09000 * 109.46438 * 170.50834 * 29 8 7 50 50 H 1.09001 * 109.47176 * 50.51939 * 29 8 7 51 51 H 1.09007 * 109.58273 * 282.59527 * 30 4 3 52 52 H 1.09007 * 109.58928 * 43.00709 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6414 -0.0006 5 6 3.5413 -0.7121 -0.0016 6 7 2.2956 -1.0870 -0.0059 7 6 4.7654 -1.5969 -0.0031 8 6 5.9745 -0.7419 -0.4039 9 1 5.9077 -0.4887 -1.4619 10 6 7.2433 -1.5145 -0.1504 11 8 8.0732 -1.0815 0.6208 12 7 7.4558 -2.6867 -0.7808 13 6 8.6896 -3.4374 -0.5349 14 1 9.0368 -3.2820 0.4866 15 6 9.7808 -3.0433 -1.5524 16 7 9.7446 -4.0349 -2.6373 17 6 10.5704 -4.0534 -3.7295 18 1 10.5298 -4.8801 -4.4232 19 6 11.4599 -3.0097 -3.9448 20 7 11.6062 -2.0712 -3.0338 21 14 12.4491 -2.9371 -5.5278 22 1 11.7475 -2.0728 -6.5106 23 1 13.7942 -2.3749 -5.2456 24 1 12.5918 -4.3060 -6.0855 25 6 8.6713 -5.0054 -2.3551 26 6 8.4787 -4.9481 -0.8191 27 6 9.5334 -5.7934 -0.1022 28 6 7.0673 -5.3884 -0.4258 29 6 5.9826 0.5427 0.4300 30 6 4.8149 1.4380 -0.0003 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.9764 2.1221 0.0007 35 1 4.9213 -2.0106 0.9931 36 1 4.6334 -2.4060 -0.7214 37 1 6.7923 -3.0328 -1.3979 38 1 9.5744 -2.0499 -1.9511 39 1 10.7585 -3.0560 -1.0710 40 1 12.2280 -1.3421 -3.1841 41 1 8.9745 -6.0063 -2.6623 42 1 7.7525 -4.7136 -2.8638 43 1 9.4633 -5.6269 0.9727 44 1 9.3623 -6.8480 -0.3185 45 1 10.5260 -5.5076 -0.4501 46 1 6.3359 -4.8194 -0.9998 47 1 6.9465 -6.4512 -0.6354 48 1 6.9137 -5.2083 0.6383 49 1 6.9226 1.0717 0.2728 50 1 5.8794 0.2913 1.4856 51 1 4.9994 1.8253 -1.0024 52 1 4.7133 2.2665 0.7008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974726205.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:01 Heat of formation + Delta-G solvation = 18.321894 kcal Electronic energy + Delta-G solvation = -31624.789105 eV Core-core repulsion = 27624.455484 eV Total energy + Delta-G solvation = -4000.333621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.31793 -41.36124 -39.68938 -37.28226 -35.69678 -34.73278 -34.06487 -32.60049 -32.43711 -30.28151 -29.51765 -28.30054 -27.86614 -27.36607 -25.45666 -24.90661 -23.82910 -22.16097 -21.52818 -21.04973 -20.18034 -19.99027 -18.68438 -18.10531 -17.85318 -17.27480 -16.87134 -16.56115 -16.19097 -15.68761 -15.49511 -15.37192 -15.13394 -14.99076 -14.79293 -14.67913 -14.56730 -13.98582 -13.80248 -13.77850 -13.48204 -13.45886 -13.16633 -13.12617 -12.94722 -12.88879 -12.75331 -12.67141 -12.58162 -12.56147 -12.27045 -12.14282 -12.09374 -11.84948 -11.72001 -11.51745 -11.29840 -10.94306 -10.85923 -10.68522 -10.45854 -9.96570 -9.11062 -8.86935 -7.84695 -5.19558 1.09870 1.44202 1.45340 1.54503 1.60414 1.85987 2.09346 2.16149 2.48947 3.16281 3.33566 3.48350 3.48818 3.55172 3.59281 3.75439 3.97768 3.99288 4.07708 4.10529 4.12894 4.24369 4.36620 4.42273 4.46981 4.52231 4.54869 4.64090 4.72562 4.74840 4.86695 4.87477 4.90365 4.94015 4.97990 5.04675 5.06355 5.09065 5.15806 5.19006 5.19181 5.32997 5.37216 5.40860 5.47884 5.57927 5.72068 5.78207 5.90889 6.18630 6.23919 6.58269 7.09168 7.16866 7.27147 7.78716 8.43219 9.24931 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.002750 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.710414 B =10179.151104 C =10961.443445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.037 4.037 3 C -0.048 4.048 4 N -0.455 5.455 5 C 0.196 3.804 6 N -0.520 5.520 7 C -0.014 4.014 8 C -0.100 4.100 9 H 0.112 0.888 10 C 0.520 3.480 11 O -0.578 6.578 12 N -0.698 5.698 13 C 0.138 3.862 14 H 0.080 0.920 15 C 0.192 3.808 16 N -0.620 5.620 17 C -0.235 4.235 18 H 0.085 0.915 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.974 3.026 22 H -0.289 1.289 23 H -0.299 1.299 24 H -0.265 1.265 25 C 0.137 3.863 26 C -0.075 4.075 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.112 4.112 30 C 0.107 3.893 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.206 0.794 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.409 0.591 38 H 0.007 0.993 39 H 0.001 0.999 40 H 0.243 0.757 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.029 0.971 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.075 0.925 51 H 0.102 0.898 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.557 3.721 7.916 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.165 4.165 3 C -0.181 4.181 4 N -0.138 5.138 5 C -0.067 4.067 6 N -0.241 5.241 7 C -0.053 4.053 8 C -0.122 4.122 9 H 0.130 0.870 10 C 0.307 3.693 11 O -0.457 6.457 12 N -0.348 5.348 13 C 0.032 3.968 14 H 0.098 0.902 15 C 0.066 3.934 16 N -0.346 5.346 17 C -0.365 4.365 18 H 0.102 0.898 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.803 3.197 22 H -0.216 1.216 23 H -0.226 1.226 24 H -0.190 1.190 25 C 0.013 3.987 26 C -0.076 4.076 27 C -0.182 4.182 28 C -0.182 4.182 29 C -0.150 4.150 30 C -0.014 4.014 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.223 0.777 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.246 0.754 38 H 0.025 0.975 39 H 0.019 0.981 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.113 0.887 50 H 0.094 0.906 51 H 0.120 0.880 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.953 3.425 8.355 21.901 hybrid contribution 1.367 1.084 -1.234 2.137 sum -18.586 4.509 7.122 20.408 Atomic orbital electron populations 1.20041 0.86097 1.03150 1.02559 1.21376 0.97847 0.88429 1.08873 1.22841 0.82320 1.01522 1.11465 1.45570 1.07492 1.07167 1.53556 1.23208 0.94575 0.82563 1.06330 1.69894 1.00598 1.31992 1.21568 1.20055 0.85195 0.95395 1.04642 1.21366 0.91337 0.96066 1.03408 0.86988 1.20746 0.88098 0.80914 0.79532 1.90696 1.48056 1.68730 1.38254 1.45867 1.21273 1.21825 1.45871 1.22065 0.84676 0.91767 0.98311 0.90178 1.21115 0.93714 0.91374 0.87237 1.44681 1.36891 1.29998 1.23043 1.19446 1.13042 1.03955 1.00008 0.89762 1.25643 1.01755 0.97358 1.01267 1.70227 1.40100 1.14880 1.34740 0.85120 0.77202 0.77971 0.79444 1.21602 1.22621 1.19000 1.21899 0.90641 0.92849 0.93359 1.21977 0.98098 0.92219 0.95321 1.21594 0.97186 0.99658 0.99740 1.21651 0.92528 1.02181 1.01792 1.21674 0.98794 0.94281 1.00227 1.22218 0.80086 0.94084 1.05026 0.91106 0.92146 0.89271 0.77730 0.88713 0.87211 0.75399 0.97528 0.98129 0.94734 0.93627 0.95045 0.91598 0.90516 0.95146 0.91722 0.90629 0.91607 0.88679 0.90605 0.87994 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.42 71.24 0.74 -0.18 16 2 C -0.04 -0.80 7.10 41.41 0.29 -0.50 16 3 C -0.05 -0.84 11.55 83.22 0.96 0.12 16 4 N -0.46 -8.63 3.13 -513.71 -1.61 -10.23 16 5 C 0.20 4.54 7.65 138.23 1.06 5.59 16 6 N -0.52 -13.86 11.24 -175.68 -1.98 -15.83 16 7 C -0.01 -0.27 5.47 30.09 0.16 -0.11 16 8 C -0.10 -2.16 2.55 -11.35 -0.03 -2.19 16 9 H 0.11 2.29 8.12 -2.39 -0.02 2.27 16 10 C 0.52 15.84 7.13 87.66 0.63 16.47 16 11 O -0.58 -22.54 15.47 -3.03 -0.05 -22.59 16 12 N -0.70 -21.04 4.36 -436.90 -1.90 -22.94 16 13 C 0.14 5.06 2.59 46.18 0.12 5.18 16 14 H 0.08 3.13 7.45 -2.38 -0.02 3.11 16 15 C 0.19 9.60 4.80 86.73 0.42 10.02 16 16 N -0.62 -30.81 3.38 -692.00 -2.34 -33.15 16 17 C -0.24 -13.01 10.26 84.03 0.86 -12.14 16 18 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16 19 C -0.07 -3.86 5.48 84.86 0.47 -3.39 16 20 N -0.95 -58.55 10.36 21.65 0.22 -58.33 16 21 Si 0.97 46.16 29.56 68.60 2.03 48.18 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 C 0.14 5.12 6.12 86.85 0.53 5.65 16 26 C -0.07 -2.27 0.83 -50.79 -0.04 -2.31 16 27 C -0.12 -3.71 8.57 71.98 0.62 -3.10 16 28 C -0.12 -2.63 8.22 71.98 0.59 -2.04 16 29 C -0.11 -2.14 4.67 30.75 0.14 -2.00 16 30 C 0.11 1.49 6.98 86.49 0.60 2.09 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16 36 H 0.11 1.94 7.95 -2.39 -0.02 1.92 16 37 H 0.41 10.28 6.84 -92.71 -0.63 9.65 16 38 H 0.01 0.38 7.27 -2.38 -0.02 0.36 16 39 H 0.00 0.03 7.55 -2.39 -0.02 0.01 16 40 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.05 1.66 8.05 -2.39 -0.02 1.65 16 42 H 0.03 1.10 7.99 -2.38 -0.02 1.09 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.03 1.13 7.91 -2.39 -0.02 1.11 16 46 H 0.06 1.22 6.48 -2.39 -0.02 1.21 16 47 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 49 H 0.09 2.02 7.79 -2.39 -0.02 2.00 16 50 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 51 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 52 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -78.72 406.34 2.77 -75.95 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.27 Total: 21.80 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 8.12 Total: 17.15 kcal Atomic # 7 Polarization: -132.89 SS G_CDS: -7.60 Total: -140.49 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -78.72 2.77 -75.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974726205.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.271 kcal (2) G-P(sol) polarization free energy of solvation -78.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds