Wall clock time and date at job start Wed Apr 1 2020 04:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.64325 * 2 1 4 4 C 1.54323 * 110.72161 * 123.14509 * 2 1 3 5 5 N 1.47016 * 107.27297 * 140.55169 * 4 2 1 6 6 C 1.36944 * 125.64908 * 180.79529 * 5 4 2 7 7 H 1.08000 * 119.99655 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00160 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99887 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99868 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47283 * 59.99906 * 10 8 6 12 12 H 1.48509 * 109.46954 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47342 * 299.99585 * 10 8 6 14 14 C 1.47423 * 108.70527 * 1.05996 * 5 4 2 15 15 C 1.54905 * 104.83063 * 335.87213 * 14 5 4 16 16 H 1.09004 * 111.04071 * 155.09987 * 15 14 5 17 17 N 1.46499 * 111.00229 * 278.93072 * 15 14 5 18 18 C 1.34777 * 120.00542 * 267.19827 * 17 15 14 19 19 O 1.21681 * 119.99384 * 354.98025 * 18 17 15 20 20 C 1.46762 * 120.00274 * 174.98860 * 18 17 15 21 21 C 1.36696 * 126.87949 * 4.99481 * 20 18 17 22 22 N 1.33301 * 107.79099 * 179.70845 * 21 20 18 23 23 C 1.30961 * 109.75477 * 359.83584 * 22 21 20 24 24 N 1.34539 * 108.95294 * 0.30791 * 23 22 21 25 25 C 1.46487 * 126.51332 * 178.29607 * 24 23 22 26 26 C 1.53045 * 109.45418 * 28.76461 * 25 24 23 27 27 C 1.52817 * 109.61135 * 270.37038 * 26 25 24 28 28 C 1.52585 * 110.30286 * 61.25118 * 27 26 25 29 29 C 1.50941 * 125.85613 * 180.78990 * 23 22 21 30 30 H 1.09001 * 109.47050 * 298.31224 * 1 2 3 31 31 H 1.09007 * 109.47102 * 58.30960 * 1 2 3 32 32 H 1.08997 * 109.47310 * 178.31256 * 1 2 3 33 33 H 1.08996 * 109.46805 * 181.69126 * 3 2 1 34 34 H 1.08999 * 109.46936 * 301.68976 * 3 2 1 35 35 H 1.08996 * 109.46782 * 61.69109 * 3 2 1 36 36 H 1.09006 * 109.88073 * 21.13740 * 4 2 1 37 37 H 1.08997 * 110.01166 * 260.04678 * 4 2 1 38 38 H 0.97000 * 119.99604 * 180.02562 * 9 8 6 39 39 H 1.09002 * 110.36771 * 94.70603 * 14 5 4 40 40 H 1.08995 * 110.37164 * 217.03122 * 14 5 4 41 41 H 0.97006 * 120.00049 * 87.20218 * 17 15 14 42 42 H 1.07997 * 126.10337 * 359.67824 * 21 20 18 43 43 H 1.08998 * 109.69335 * 268.66013 * 25 24 23 44 44 H 1.09005 * 109.33321 * 148.64681 * 25 24 23 45 45 H 1.08997 * 109.44487 * 150.32430 * 26 25 24 46 46 H 1.09000 * 109.42419 * 30.40311 * 26 25 24 47 47 H 1.09007 * 109.33235 * 300.99078 * 27 26 25 48 48 H 1.09003 * 109.32944 * 181.50501 * 27 26 25 49 49 H 1.09006 * 109.45588 * 273.38169 * 28 27 26 50 50 H 1.08999 * 109.44877 * 153.42146 * 28 27 26 51 51 H 1.08998 * 109.49898 * 346.73606 * 29 23 22 52 52 H 1.08998 * 109.50095 * 106.84824 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2444 -1.5496 0.7415 6 6 4.0068 -2.3912 1.5068 7 1 3.7664 -2.5397 2.5492 8 6 5.0892 -3.0526 0.9431 9 7 5.3825 -2.8712 -0.3272 10 14 6.1296 -4.2000 1.9873 11 1 5.2780 -5.2942 2.5191 12 1 7.2154 -4.7784 1.1553 13 1 6.7224 -3.4403 3.1171 14 6 3.4632 -1.2510 -0.6855 15 6 2.0789 -0.7975 -1.2125 16 1 2.1842 -0.1555 -2.0871 17 7 1.2270 -1.9513 -1.5112 18 6 1.2024 -2.4665 -2.7564 19 8 1.8159 -1.9191 -3.6534 20 6 0.4355 -3.6874 -3.0305 21 6 -0.3755 -4.3597 -2.1593 22 7 -0.8863 -5.4081 -2.8048 23 6 -0.4424 -5.4288 -4.0367 24 7 0.3842 -4.3833 -4.2209 25 6 1.1203 -4.0593 -5.4452 26 6 0.3452 -4.5784 -6.6585 27 6 0.7792 -6.0101 -6.9702 28 6 0.4722 -6.9255 -5.7888 29 6 -0.8028 -6.4487 -5.0894 30 1 -0.3633 0.4874 0.9047 31 1 -0.3634 0.5399 -0.8745 32 1 -0.3634 -1.0272 -0.0303 33 1 3.1587 1.4096 -0.0303 34 1 1.6922 1.9621 -0.8744 35 1 1.7414 1.9435 0.9047 36 1 1.3129 -1.4732 1.5800 37 1 2.3735 -0.1011 1.9997 38 1 6.1386 -3.3337 -0.7212 39 1 4.1930 -0.4493 -0.7978 40 1 3.7958 -2.1447 -1.2134 41 1 0.6806 -2.3446 -0.8128 42 1 -0.5676 -4.0898 -1.1314 43 1 2.1047 -4.5264 -5.4163 44 1 1.2340 -2.9780 -5.5225 45 1 0.5496 -3.9416 -7.5191 46 1 -0.7226 -4.5621 -6.4405 47 1 1.8505 -6.0268 -7.1710 48 1 0.2441 -6.3656 -7.8508 49 1 1.3038 -6.9006 -5.0845 50 1 0.3302 -7.9451 -6.1470 51 1 -1.2989 -7.2975 -4.6188 52 1 -1.4715 -5.9955 -5.8212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974729535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:04 Heat of formation + Delta-G solvation = 43.953647 kcal Electronic energy + Delta-G solvation = -32254.459934 eV Core-core repulsion = 28255.237789 eV Total energy + Delta-G solvation = -3999.222145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.35765 -39.55888 -37.78679 -37.40470 -33.95937 -33.65731 -33.07010 -30.99537 -30.69994 -29.70633 -28.05901 -26.90877 -26.01092 -25.58961 -24.66746 -23.47573 -22.48019 -20.64511 -20.19768 -19.83337 -19.65020 -18.69788 -17.38850 -16.72359 -16.32375 -15.83730 -15.59454 -15.43073 -15.04654 -14.60973 -14.24436 -14.09068 -13.94952 -13.75417 -13.69955 -13.36519 -13.21128 -12.99099 -12.84587 -12.67454 -12.18389 -12.13313 -11.93421 -11.91241 -11.76602 -11.29781 -11.21840 -11.16122 -11.07093 -10.99852 -10.82874 -10.76074 -10.41237 -10.23054 -10.13822 -9.96389 -9.81522 -9.68311 -9.58920 -9.47703 -8.69031 -8.50419 -8.21155 -6.81099 -5.63228 -3.05793 1.51974 2.57920 2.94559 3.41112 3.45456 3.46718 3.60350 3.76560 4.17169 4.35247 4.42529 4.49526 4.53340 4.82173 4.94699 5.00073 5.01997 5.08893 5.22664 5.26107 5.28536 5.32024 5.38616 5.48566 5.53094 5.58210 5.62078 5.63525 5.71552 5.76945 5.80634 5.87716 5.89374 5.99999 6.03693 6.10077 6.16854 6.26919 6.29901 6.41380 6.49255 6.59806 6.63358 6.70162 6.74185 6.97560 7.14717 7.46587 7.62464 7.84685 7.93937 8.05928 8.37930 8.60672 9.22155 9.84012 10.47724 11.39645 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010358 B = 0.003661 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.550395 B = 7647.052241 C = 9049.316178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.128 4.128 4 C 0.142 3.858 5 N -0.600 5.600 6 C -0.224 4.224 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.125 3.875 16 H 0.091 0.909 17 N -0.685 5.685 18 C 0.595 3.405 19 O -0.554 6.554 20 C -0.075 4.075 21 C 0.034 3.966 22 N -0.495 5.495 23 C 0.222 3.778 24 N -0.415 5.415 25 C 0.098 3.902 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.126 4.126 29 C -0.035 4.035 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.022 0.978 40 H 0.112 0.888 41 H 0.399 0.601 42 H 0.176 0.824 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.097 0.903 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 -1.621 -11.684 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.186 4.186 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.021 3.979 15 C 0.020 3.980 16 H 0.108 0.892 17 N -0.334 5.334 18 C 0.381 3.619 19 O -0.434 6.434 20 C -0.192 4.192 21 C -0.120 4.120 22 N -0.213 5.213 23 C -0.040 4.040 24 N -0.096 5.096 25 C -0.024 4.024 26 C -0.177 4.177 27 C -0.162 4.162 28 C -0.164 4.164 29 C -0.074 4.074 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.129 0.871 41 H 0.234 0.766 42 H 0.193 0.807 43 H 0.105 0.895 44 H 0.130 0.870 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.115 0.885 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.294 -1.880 -12.155 18.111 hybrid contribution 1.067 -0.153 0.795 1.339 sum -12.227 -2.033 -11.360 16.813 Atomic orbital electron populations 1.21722 0.94542 1.01329 1.01296 1.21843 0.94926 0.95719 0.96317 1.21685 1.01885 0.94067 1.00935 1.21421 0.90294 0.93025 0.93652 1.44445 1.30586 1.50432 1.07190 1.18993 1.06325 1.17224 0.92711 0.90568 1.24768 0.98746 1.00558 0.96306 1.69789 1.30034 1.46122 1.10772 0.86195 0.79861 0.80670 0.79015 1.21187 1.21665 1.21230 1.22316 0.89082 1.01325 0.85211 1.22569 0.93045 0.85806 0.96565 0.89152 1.45424 1.45480 1.32795 1.09731 1.16648 0.79892 0.82047 0.83285 1.90738 1.46009 1.61908 1.44724 1.20841 1.09480 1.00601 0.88253 1.22571 0.97284 0.92711 0.99434 1.70051 1.26394 1.21556 1.03344 1.23348 0.94578 0.91318 0.94746 1.45189 1.33519 1.20224 1.10632 1.22202 0.95130 1.04229 0.80825 1.22040 1.01122 0.97238 0.97335 1.21626 1.02101 0.94181 0.98282 1.21617 0.97491 0.99770 0.97526 1.20217 0.98280 0.95435 0.93494 0.92666 0.92849 0.92873 0.91777 0.93096 0.92617 0.95963 0.95785 0.93730 0.96059 0.87064 0.76551 0.80674 0.89500 0.87049 0.89570 0.90279 0.91197 0.91144 0.91379 0.90353 0.88460 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.15 37.15 0.30 -1.43 16 2 C -0.09 -1.42 0.80 -152.67 -0.12 -1.55 16 3 C -0.13 -1.91 8.44 37.16 0.31 -1.60 16 4 C 0.14 2.81 6.41 -3.07 -0.02 2.79 16 5 N -0.60 -14.84 3.39 -170.08 -0.58 -15.41 16 6 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.09 10.09 55.49 0.56 -26.53 16 10 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.15 3.54 5.27 -2.53 -0.01 3.53 16 15 C 0.13 2.39 2.71 -65.78 -0.18 2.21 16 16 H 0.09 1.76 7.38 -51.93 -0.38 1.37 16 17 N -0.69 -12.23 4.50 -53.01 -0.24 -12.47 16 18 C 0.60 11.15 7.78 -12.82 -0.10 11.05 16 19 O -0.55 -11.57 14.48 5.21 0.08 -11.50 16 20 C -0.07 -1.26 6.90 -82.21 -0.57 -1.83 16 21 C 0.03 0.55 11.37 -17.47 -0.20 0.35 16 22 N -0.49 -7.92 11.20 -10.47 -0.12 -8.04 16 23 C 0.22 3.09 6.83 -155.37 -1.06 2.03 16 24 N -0.41 -6.16 3.09 -109.83 -0.34 -6.50 16 25 C 0.10 1.22 5.93 -4.03 -0.02 1.20 16 26 C -0.14 -1.19 5.55 -26.80 -0.15 -1.33 16 27 C -0.12 -0.89 5.68 -27.04 -0.15 -1.05 16 28 C -0.13 -1.04 5.67 -26.92 -0.15 -1.20 16 29 C -0.04 -0.34 5.54 -27.75 -0.15 -0.49 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.05 0.68 6.34 -51.93 -0.33 0.35 16 33 H 0.06 1.08 7.46 -51.93 -0.39 0.69 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.02 0.43 7.82 -51.93 -0.41 0.03 16 37 H 0.02 0.48 7.85 -51.93 -0.41 0.08 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 39 H 0.02 0.56 7.73 -51.93 -0.40 0.16 16 40 H 0.11 3.15 5.87 -51.93 -0.30 2.85 16 41 H 0.40 6.52 6.08 -40.82 -0.25 6.27 16 42 H 0.18 2.39 7.47 -52.49 -0.39 2.00 16 43 H 0.09 1.12 7.82 -51.93 -0.41 0.71 16 44 H 0.11 1.57 6.45 -51.93 -0.33 1.23 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.68 5.68 -51.93 -0.29 0.39 16 47 H 0.07 0.50 8.09 -51.92 -0.42 0.08 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 52 H 0.09 0.69 6.30 -51.93 -0.33 0.36 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -33.17 393.90 -10.63 -43.80 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.38 Total: 7.41 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.53 Total: 6.05 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -0.71 Total: -68.96 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.17 -10.63 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974729535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.750 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds