Wall clock time and date at job start Wed Apr 1 2020 04:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.64325 * 2 1 4 4 C 1.54323 * 110.72161 * 123.14509 * 2 1 3 5 5 N 1.47016 * 107.27297 * 140.55169 * 4 2 1 6 6 C 1.36944 * 125.64908 * 180.79529 * 5 4 2 7 7 H 1.08000 * 119.99655 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00160 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99887 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99868 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47283 * 59.99906 * 10 8 6 12 12 H 1.48509 * 109.46954 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47342 * 299.99585 * 10 8 6 14 14 C 1.47423 * 108.70527 * 1.05996 * 5 4 2 15 15 C 1.54905 * 104.83063 * 335.87213 * 14 5 4 16 16 H 1.09004 * 111.04071 * 155.09987 * 15 14 5 17 17 N 1.46499 * 111.00229 * 278.93072 * 15 14 5 18 18 C 1.34777 * 120.00542 * 267.19827 * 17 15 14 19 19 O 1.21681 * 119.99384 * 354.98025 * 18 17 15 20 20 C 1.46762 * 120.00274 * 174.98860 * 18 17 15 21 21 C 1.36696 * 126.87949 * 4.99481 * 20 18 17 22 22 N 1.33301 * 107.79099 * 179.70845 * 21 20 18 23 23 C 1.30961 * 109.75477 * 359.83584 * 22 21 20 24 24 N 1.34539 * 108.95294 * 0.30791 * 23 22 21 25 25 C 1.46487 * 126.51332 * 178.29607 * 24 23 22 26 26 C 1.53045 * 109.45418 * 28.76461 * 25 24 23 27 27 C 1.52817 * 109.61135 * 270.37038 * 26 25 24 28 28 C 1.52585 * 110.30286 * 61.25118 * 27 26 25 29 29 C 1.50941 * 125.85613 * 180.78990 * 23 22 21 30 30 H 1.09001 * 109.47050 * 298.31224 * 1 2 3 31 31 H 1.09007 * 109.47102 * 58.30960 * 1 2 3 32 32 H 1.08997 * 109.47310 * 178.31256 * 1 2 3 33 33 H 1.08996 * 109.46805 * 181.69126 * 3 2 1 34 34 H 1.08999 * 109.46936 * 301.68976 * 3 2 1 35 35 H 1.08996 * 109.46782 * 61.69109 * 3 2 1 36 36 H 1.09006 * 109.88073 * 21.13740 * 4 2 1 37 37 H 1.08997 * 110.01166 * 260.04678 * 4 2 1 38 38 H 0.97000 * 119.99604 * 180.02562 * 9 8 6 39 39 H 1.09002 * 110.36771 * 94.70603 * 14 5 4 40 40 H 1.08995 * 110.37164 * 217.03122 * 14 5 4 41 41 H 0.97006 * 120.00049 * 87.20218 * 17 15 14 42 42 H 1.07997 * 126.10337 * 359.67824 * 21 20 18 43 43 H 1.08998 * 109.69335 * 268.66013 * 25 24 23 44 44 H 1.09005 * 109.33321 * 148.64681 * 25 24 23 45 45 H 1.08997 * 109.44487 * 150.32430 * 26 25 24 46 46 H 1.09000 * 109.42419 * 30.40311 * 26 25 24 47 47 H 1.09007 * 109.33235 * 300.99078 * 27 26 25 48 48 H 1.09003 * 109.32944 * 181.50501 * 27 26 25 49 49 H 1.09006 * 109.45588 * 273.38169 * 28 27 26 50 50 H 1.08999 * 109.44877 * 153.42146 * 28 27 26 51 51 H 1.08998 * 109.49898 * 346.73606 * 29 23 22 52 52 H 1.08998 * 109.50095 * 106.84824 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2444 -1.5496 0.7415 6 6 4.0068 -2.3912 1.5068 7 1 3.7664 -2.5397 2.5492 8 6 5.0892 -3.0526 0.9431 9 7 5.3825 -2.8712 -0.3272 10 14 6.1296 -4.2000 1.9873 11 1 5.2780 -5.2942 2.5191 12 1 7.2154 -4.7784 1.1553 13 1 6.7224 -3.4403 3.1171 14 6 3.4632 -1.2510 -0.6855 15 6 2.0789 -0.7975 -1.2125 16 1 2.1842 -0.1555 -2.0871 17 7 1.2270 -1.9513 -1.5112 18 6 1.2024 -2.4665 -2.7564 19 8 1.8159 -1.9191 -3.6534 20 6 0.4355 -3.6874 -3.0305 21 6 -0.3755 -4.3597 -2.1593 22 7 -0.8863 -5.4081 -2.8048 23 6 -0.4424 -5.4288 -4.0367 24 7 0.3842 -4.3833 -4.2209 25 6 1.1203 -4.0593 -5.4452 26 6 0.3452 -4.5784 -6.6585 27 6 0.7792 -6.0101 -6.9702 28 6 0.4722 -6.9255 -5.7888 29 6 -0.8028 -6.4487 -5.0894 30 1 -0.3633 0.4874 0.9047 31 1 -0.3634 0.5399 -0.8745 32 1 -0.3634 -1.0272 -0.0303 33 1 3.1587 1.4096 -0.0303 34 1 1.6922 1.9621 -0.8744 35 1 1.7414 1.9435 0.9047 36 1 1.3129 -1.4732 1.5800 37 1 2.3735 -0.1011 1.9997 38 1 6.1386 -3.3337 -0.7212 39 1 4.1930 -0.4493 -0.7978 40 1 3.7958 -2.1447 -1.2134 41 1 0.6806 -2.3446 -0.8128 42 1 -0.5676 -4.0898 -1.1314 43 1 2.1047 -4.5264 -5.4163 44 1 1.2340 -2.9780 -5.5225 45 1 0.5496 -3.9416 -7.5191 46 1 -0.7226 -4.5621 -6.4405 47 1 1.8505 -6.0268 -7.1710 48 1 0.2441 -6.3656 -7.8508 49 1 1.3038 -6.9006 -5.0845 50 1 0.3302 -7.9451 -6.1470 51 1 -1.2989 -7.2975 -4.6188 52 1 -1.4715 -5.9955 -5.8212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974729535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:03 Heat of formation + Delta-G solvation = 23.587863 kcal Electronic energy + Delta-G solvation = -32255.343061 eV Core-core repulsion = 28255.237789 eV Total energy + Delta-G solvation = -4000.105271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.50928 -41.08825 -39.30500 -38.26607 -35.71215 -34.83324 -34.50987 -32.61354 -31.95357 -30.91129 -29.58939 -28.07432 -27.46113 -26.98443 -25.69170 -24.98151 -23.86432 -22.28385 -21.34305 -20.93595 -20.81941 -20.08049 -18.71762 -18.68998 -17.52029 -17.23830 -16.93708 -16.48363 -16.29683 -15.98135 -15.66004 -15.54134 -15.36497 -15.13333 -14.90205 -14.66694 -14.49162 -14.15564 -13.87367 -13.73981 -13.69887 -13.66855 -13.07932 -13.01808 -12.98535 -12.84965 -12.68448 -12.61244 -12.57114 -12.17638 -11.94490 -11.79397 -11.77644 -11.74772 -11.55134 -11.46449 -11.36864 -11.29865 -10.95351 -10.76537 -10.72321 -10.06376 -9.49356 -8.84996 -7.76980 -5.21255 0.25175 1.41435 1.43047 1.46028 1.52005 1.75116 2.23079 2.38222 2.47883 3.23293 3.33175 3.51003 3.56108 3.63145 3.67221 3.71610 3.86032 3.96767 4.04444 4.07170 4.17376 4.22206 4.28748 4.32203 4.41159 4.49835 4.56398 4.70530 4.75533 4.79818 4.83492 4.86327 4.88383 4.93496 5.02270 5.03115 5.09222 5.15063 5.15459 5.20516 5.27097 5.27691 5.33081 5.34806 5.44014 5.47947 5.52706 5.65627 5.80478 6.07237 6.29405 6.48328 6.84358 7.08532 7.15038 7.78678 8.42001 9.23555 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010358 B = 0.003661 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.550395 B = 7647.052241 C = 9049.316178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.232 4.232 7 H 0.084 0.916 8 C -0.067 4.067 9 N -0.949 5.949 10 Si 0.975 3.025 11 H -0.277 1.277 12 H -0.299 1.299 13 H -0.276 1.276 14 C 0.155 3.845 15 C 0.138 3.862 16 H 0.086 0.914 17 N -0.679 5.679 18 C 0.592 3.408 19 O -0.584 6.584 20 C -0.109 4.109 21 C 0.039 3.961 22 N -0.520 5.520 23 C 0.233 3.767 24 N -0.420 5.420 25 C 0.094 3.906 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.122 4.122 29 C -0.036 4.036 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.028 0.972 38 H 0.242 0.758 39 H -0.010 1.010 40 H 0.067 0.933 41 H 0.407 0.593 42 H 0.193 0.807 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.037 0.963 50 H 0.105 0.895 51 H 0.108 0.892 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.265 -2.277 -11.999 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C -0.183 4.183 4 C 0.012 3.988 5 N -0.343 5.343 6 C -0.361 4.361 7 H 0.102 0.898 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.803 3.197 11 H -0.203 1.203 12 H -0.226 1.226 13 H -0.202 1.202 14 C 0.029 3.971 15 C 0.033 3.967 16 H 0.104 0.896 17 N -0.328 5.328 18 C 0.380 3.620 19 O -0.466 6.466 20 C -0.226 4.226 21 C -0.115 4.115 22 N -0.239 5.239 23 C -0.029 4.029 24 N -0.100 5.100 25 C -0.027 4.027 26 C -0.167 4.167 27 C -0.157 4.157 28 C -0.161 4.161 29 C -0.074 4.074 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.007 0.993 40 H 0.085 0.915 41 H 0.244 0.756 42 H 0.209 0.791 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.119 0.881 49 H 0.056 0.944 50 H 0.123 0.877 51 H 0.126 0.874 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.082 -2.520 -12.440 20.487 hybrid contribution 1.920 0.035 0.901 2.121 sum -14.162 -2.485 -11.538 18.435 Atomic orbital electron populations 1.21697 0.91221 1.02218 1.03119 1.21824 0.97357 0.95490 0.92688 1.21690 1.00067 0.93455 1.03137 1.21663 0.88833 0.93157 0.95135 1.44664 1.31671 1.50644 1.07313 1.19414 1.06392 1.16969 0.93331 0.89780 1.25579 1.00383 1.02574 0.97367 1.70100 1.30184 1.47245 1.12416 0.85200 0.78043 0.78912 0.77503 1.20300 1.22590 1.20212 1.21947 0.91551 0.98277 0.85329 1.22239 0.90825 0.86275 0.97405 0.89608 1.45304 1.45084 1.32550 1.09854 1.16966 0.79515 0.82393 0.83096 1.90712 1.47395 1.62903 1.45630 1.20709 1.11020 1.00988 0.89899 1.22912 0.96324 0.92286 1.00023 1.70105 1.27549 1.21858 1.04436 1.24310 0.92599 0.90949 0.95077 1.45416 1.33712 1.20267 1.10633 1.22325 0.95441 1.03043 0.81881 1.22052 1.00550 0.98466 0.95667 1.21632 1.02468 0.92830 0.98810 1.21621 0.95688 1.01591 0.97173 1.20507 0.99325 0.94653 0.92923 0.90310 0.91576 0.92497 0.94633 0.91053 0.90257 0.94672 0.95428 0.94862 0.99266 0.91524 0.75561 0.79060 0.90713 0.89213 0.87705 0.89792 0.91405 0.88107 0.94421 0.87703 0.87412 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.15 71.98 0.59 -2.34 16 2 C -0.07 -2.29 0.80 -50.99 -0.04 -2.33 16 3 C -0.13 -3.58 8.44 71.98 0.61 -2.98 16 4 C 0.14 5.30 6.41 86.73 0.56 5.86 16 5 N -0.62 -31.24 3.39 -692.01 -2.35 -33.59 16 6 C -0.23 -12.98 10.27 84.03 0.86 -12.12 16 7 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 8 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 9 N -0.95 -58.96 10.09 21.65 0.22 -58.74 16 10 Si 0.97 46.89 29.55 68.60 2.03 48.91 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 14 C 0.16 7.95 5.27 86.85 0.46 8.40 16 15 C 0.14 5.41 2.71 46.38 0.13 5.54 16 16 H 0.09 3.45 7.38 -2.38 -0.02 3.43 16 17 N -0.68 -24.73 4.50 -439.84 -1.98 -26.70 16 18 C 0.59 23.13 7.78 86.47 0.67 23.80 16 19 O -0.58 -25.82 14.48 -4.29 -0.06 -25.88 16 20 C -0.11 -3.81 6.90 40.04 0.28 -3.53 16 21 C 0.04 1.25 11.37 84.11 0.96 2.21 16 22 N -0.52 -16.31 11.20 -187.05 -2.10 -18.40 16 23 C 0.23 6.28 6.83 138.23 0.94 7.22 16 24 N -0.42 -12.63 3.09 -501.39 -1.55 -14.18 16 25 C 0.09 2.42 5.93 86.40 0.51 2.93 16 26 C -0.13 -1.97 5.55 30.55 0.17 -1.80 16 27 C -0.12 -1.40 5.68 30.40 0.17 -1.23 16 28 C -0.12 -1.76 5.67 30.47 0.17 -1.58 16 29 C -0.04 -0.58 5.54 29.94 0.17 -0.42 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.06 1.30 6.34 -2.39 -0.02 1.28 16 33 H 0.03 1.20 7.46 -2.39 -0.02 1.18 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.29 7.82 -2.38 -0.02 1.27 16 37 H 0.03 1.07 7.85 -2.39 -0.02 1.05 16 38 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 39 H -0.01 -0.59 7.73 -2.39 -0.02 -0.60 16 40 H 0.07 4.05 5.87 -2.39 -0.01 4.03 16 41 H 0.41 13.24 6.08 -92.70 -0.56 12.68 16 42 H 0.19 5.13 7.47 -2.91 -0.02 5.11 16 43 H 0.07 2.05 7.82 -2.39 -0.02 2.03 16 44 H 0.09 2.68 6.45 -2.38 -0.02 2.67 16 45 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.22 5.68 -2.39 -0.01 1.20 16 47 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 48 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.04 0.77 7.85 -2.38 -0.02 0.76 16 50 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.11 1.34 6.30 -2.39 -0.02 1.33 16 Total: -1.00 -77.03 393.90 2.24 -74.79 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.37 Total: 29.54 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 7.67 Total: 24.25 kcal Atomic # 7 Polarization: -143.85 SS G_CDS: -7.76 Total: -151.61 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.06 Total: -25.88 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -77.03 2.24 -74.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974729535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.381 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds