Wall clock time and date at job start Wed Apr 1 2020 04:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.91451 * 2 1 4 4 C 1.54907 * 111.00584 * 236.09436 * 2 1 3 5 5 N 1.47419 * 104.83181 * 278.93646 * 4 2 1 6 6 C 1.36940 * 125.64803 * 155.82079 * 5 4 2 7 7 H 1.08001 * 119.99884 * 0.02562 * 6 5 4 8 8 C 1.38816 * 120.00159 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00280 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46851 * 90.00295 * 10 8 6 12 12 H 1.48498 * 109.47568 * 210.00328 * 10 8 6 13 13 H 1.48503 * 109.47140 * 330.00977 * 10 8 6 14 14 C 1.47022 * 108.70535 * 335.87435 * 5 4 2 15 15 C 1.54326 * 107.26928 * 1.05679 * 14 5 4 16 16 H 1.09004 * 110.87000 * 140.63068 * 15 14 5 17 17 N 1.46499 * 110.72074 * 263.83187 * 15 14 5 18 18 C 1.34772 * 120.00044 * 268.52759 * 17 15 14 19 19 O 1.21285 * 120.00161 * 359.97438 * 18 17 15 20 20 C 1.50702 * 120.00065 * 180.02562 * 18 17 15 21 21 N 1.46506 * 109.47191 * 179.97438 * 20 18 17 22 22 C 1.35309 * 126.49562 * 264.99695 * 21 20 18 23 23 N 1.30755 * 108.76525 * 179.97438 * 22 21 20 24 24 C 1.33576 * 109.14800 * 359.97438 * 23 22 21 25 25 C 1.35029 * 107.97945 * 0.04882 * 24 23 22 26 26 C 1.50656 * 124.45368 * 179.90635 * 25 24 23 27 27 C 1.53389 * 108.38494 * 343.60957 * 26 25 24 28 28 C 1.53126 * 109.44661 * 49.63655 * 27 26 25 29 29 C 1.50869 * 128.03267 * 180.15167 * 24 23 22 30 30 H 1.09003 * 109.47238 * 296.10399 * 1 2 3 31 31 H 1.09004 * 109.47098 * 56.09875 * 1 2 3 32 32 H 1.08997 * 109.47488 * 176.09809 * 1 2 3 33 33 H 1.09004 * 109.47032 * 183.89931 * 3 2 1 34 34 H 1.09006 * 109.47277 * 303.89765 * 3 2 1 35 35 H 1.08994 * 109.47331 * 63.89800 * 3 2 1 36 36 H 1.09004 * 110.36477 * 37.77475 * 4 2 1 37 37 H 1.08997 * 110.36679 * 159.98819 * 4 2 1 38 38 H 0.97006 * 119.99797 * 179.97438 * 9 8 6 39 39 H 1.08996 * 109.88300 * 241.64265 * 14 5 4 40 40 H 1.08997 * 109.88864 * 120.47496 * 14 5 4 41 41 H 0.97004 * 120.00011 * 88.52002 * 17 15 14 42 42 H 1.08999 * 109.47397 * 59.99178 * 20 18 17 43 43 H 1.09000 * 109.46949 * 299.99117 * 20 18 17 44 44 H 1.08003 * 125.61454 * 359.94462 * 22 21 20 45 45 H 1.09004 * 109.68199 * 223.88448 * 26 25 24 46 46 H 1.09002 * 109.67456 * 103.33603 * 26 25 24 47 47 H 1.09003 * 109.47788 * 289.64134 * 27 26 25 48 48 H 1.09007 * 109.47674 * 169.62657 * 27 26 25 49 49 H 1.08996 * 109.46356 * 50.00344 * 28 27 26 50 50 H 1.09000 * 109.45915 * 169.96663 * 28 27 26 51 51 H 1.08998 * 109.67644 * 43.50135 * 29 24 23 52 52 H 1.09004 * 109.67075 * 282.96121 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 2.0139 -2.2159 -0.7732 6 6 1.9444 -3.2999 -1.6070 7 1 1.9391 -3.1582 -2.6776 8 6 1.8818 -4.5810 -1.0761 9 7 1.8888 -4.7537 0.2287 10 14 1.7877 -6.0598 -2.2134 11 1 3.1607 -6.5272 -2.5322 12 1 1.0359 -7.1519 -1.5444 13 1 1.0918 -5.6760 -3.4679 14 6 2.0284 -2.2646 0.6962 15 6 2.0861 -0.8078 1.2023 16 1 1.4539 -0.6766 2.0806 17 7 3.4666 -0.4155 1.4963 18 6 3.9653 -0.5839 2.7370 19 8 3.2711 -1.0599 3.6102 20 6 5.3853 -0.1798 3.0396 21 7 5.6841 -0.4615 4.4459 22 6 5.5959 0.4096 5.4775 23 7 5.9418 -0.2056 6.5782 24 6 6.2573 -1.4716 6.2920 25 6 6.1026 -1.6493 4.9625 26 6 6.3616 -2.9458 4.2400 27 6 7.1941 -3.8519 5.1557 28 6 6.5461 -3.9095 6.5419 29 6 6.7091 -2.5542 7.2407 30 1 -0.3634 0.4522 0.9229 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3634 -1.0252 -0.0699 33 1 3.1637 1.4026 -0.0699 34 1 1.6705 1.9732 -0.8530 35 1 1.7836 1.9300 0.9228 36 1 1.4672 -0.6462 -2.0836 37 1 3.1176 -0.5220 -1.4035 38 1 1.8447 -5.6489 0.5998 39 1 2.9062 -2.8115 1.0403 40 1 1.1218 -2.7478 1.0601 41 1 4.0217 -0.0345 0.7980 42 1 5.5082 0.8863 2.8488 43 1 6.0670 -0.7438 2.4030 44 1 5.2907 1.4430 5.4037 45 1 6.9113 -2.7496 3.3194 46 1 5.4140 -3.4311 4.0061 47 1 8.2040 -3.4511 5.2430 48 1 7.2368 -4.8556 4.7326 49 1 5.4858 -4.1392 6.4379 50 1 7.0289 -4.6850 7.1365 51 1 6.0977 -2.5304 8.1427 52 1 7.7560 -2.3996 7.5021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974821252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:18 Heat of formation + Delta-G solvation = 20.593773 kcal Electronic energy + Delta-G solvation = -31911.019706 eV Core-core repulsion = 27910.784601 eV Total energy + Delta-G solvation = -4000.235105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.30613 -41.24099 -39.49950 -37.54193 -35.72794 -35.17860 -34.55084 -32.61972 -31.48372 -30.13923 -29.85010 -28.63412 -27.85913 -27.33835 -25.14382 -24.46762 -23.01873 -22.63600 -21.89227 -21.33073 -20.21741 -19.79213 -18.71399 -18.51260 -18.07023 -17.04163 -16.73109 -16.53275 -16.15178 -15.68438 -15.67624 -15.48089 -15.41412 -14.87507 -14.81311 -14.68978 -14.40956 -14.25789 -14.00263 -13.81459 -13.47004 -13.45670 -13.27003 -13.14616 -12.97423 -12.85799 -12.83722 -12.68578 -12.58842 -12.14629 -11.88816 -11.85767 -11.80925 -11.77808 -11.76077 -11.55509 -11.33205 -11.30891 -10.79226 -10.76619 -10.38044 -10.05332 -9.03432 -8.90270 -7.85320 -5.21556 0.95803 1.43330 1.44851 1.49656 1.53693 1.69593 2.13354 2.29435 2.47980 3.33697 3.46470 3.49775 3.63113 3.70683 3.75246 3.80861 3.94191 3.95024 3.97423 4.06445 4.09036 4.20776 4.35909 4.38708 4.49958 4.54593 4.60011 4.67347 4.68579 4.79438 4.83585 4.88769 4.95467 4.98159 5.03675 5.07344 5.12324 5.14670 5.15962 5.24210 5.27909 5.35553 5.40796 5.45135 5.47481 5.55541 5.67813 5.72128 5.84149 6.16100 6.23637 6.52147 7.06821 7.13312 7.19727 7.77125 8.40567 9.23761 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.003496 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.880051 B = 8006.217985 C =10124.375550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.137 3.863 5 N -0.619 5.619 6 C -0.235 4.235 7 H 0.087 0.913 8 C -0.067 4.067 9 N -0.954 5.954 10 Si 0.974 3.026 11 H -0.285 1.285 12 H -0.301 1.301 13 H -0.266 1.266 14 C 0.195 3.805 15 C 0.140 3.860 16 H 0.072 0.928 17 N -0.691 5.691 18 C 0.492 3.508 19 O -0.578 6.578 20 C 0.091 3.909 21 N -0.437 5.437 22 C 0.181 3.819 23 N -0.522 5.522 24 C -0.027 4.027 25 C -0.024 4.024 26 C -0.045 4.045 27 C -0.106 4.106 28 C -0.116 4.116 29 C -0.029 4.029 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.038 0.962 38 H 0.242 0.758 39 H 0.002 0.998 40 H -0.001 1.001 41 H 0.415 0.585 42 H 0.176 0.824 43 H 0.139 0.861 44 H 0.237 0.763 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.043 0.957 50 H 0.095 0.905 51 H 0.068 0.932 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.052 14.002 3.983 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 C -0.180 4.180 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.105 0.895 8 C -0.260 4.260 9 N -0.603 5.603 10 Si 0.802 3.198 11 H -0.212 1.212 12 H -0.228 1.228 13 H -0.190 1.190 14 C 0.068 3.932 15 C 0.034 3.966 16 H 0.090 0.910 17 N -0.343 5.343 18 C 0.278 3.722 19 O -0.456 6.456 20 C -0.035 4.035 21 N -0.119 5.119 22 C -0.100 4.100 23 N -0.241 5.241 24 C -0.156 4.156 25 C -0.139 4.139 26 C -0.083 4.083 27 C -0.144 4.144 28 C -0.154 4.154 29 C -0.067 4.067 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.253 0.747 42 H 0.194 0.806 43 H 0.156 0.844 44 H 0.253 0.747 45 H 0.102 0.898 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.062 0.938 50 H 0.114 0.886 51 H 0.087 0.913 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.534 13.853 5.223 18.170 hybrid contribution -0.592 -1.698 -1.437 2.302 sum 9.942 12.156 3.785 16.154 Atomic orbital electron populations 1.21608 0.93348 1.00882 1.02504 1.21988 0.96345 0.96138 0.93055 1.21650 1.01392 0.92025 1.02961 1.21919 0.97963 0.83121 0.95719 1.44665 1.86603 1.01643 1.01640 1.19473 1.42164 0.85019 0.89796 0.89498 1.25621 1.02933 1.00268 0.97137 1.70230 1.58571 1.20428 1.11088 0.85142 0.77427 0.79070 0.78118 1.21244 1.22806 1.19022 1.21047 0.96938 0.91449 0.83730 1.22021 0.82653 0.94558 0.97387 0.90985 1.45702 1.14019 1.63403 1.11223 1.21347 0.90199 0.78173 0.82488 1.90786 1.61726 1.45477 1.47646 1.21956 0.92882 1.08069 0.80554 1.44688 1.48944 1.09864 1.08389 1.25602 1.04549 0.98840 0.80997 1.69909 1.19181 1.06874 1.28101 1.20891 1.08264 0.93696 0.92714 1.21146 1.08071 0.89444 0.95254 1.20121 0.99953 0.89813 0.98435 1.21528 0.98986 0.99403 0.94450 1.21600 1.00564 0.96751 0.96509 1.19964 1.01363 0.89963 0.95441 0.91884 0.90292 0.95420 0.91033 0.90558 0.91790 0.93587 0.94411 0.94845 0.98010 0.98331 0.74712 0.80632 0.84357 0.74652 0.89845 0.93487 0.90009 0.89971 0.93827 0.88612 0.91330 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 8.57 71.98 0.62 -3.07 16 2 C -0.07 -2.12 0.83 -50.79 -0.04 -2.16 16 3 C -0.12 -2.23 8.22 71.98 0.59 -1.64 16 4 C 0.14 4.82 6.12 86.86 0.53 5.35 16 5 N -0.62 -29.99 3.38 -692.00 -2.34 -32.33 16 6 C -0.24 -12.76 10.28 84.03 0.86 -11.90 16 7 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 8 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 9 N -0.95 -58.84 10.31 21.65 0.22 -58.62 16 10 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 C 0.19 9.66 4.79 86.73 0.42 10.08 16 15 C 0.14 5.01 2.59 46.18 0.12 5.13 16 16 H 0.07 2.86 7.45 -2.39 -0.02 2.84 16 17 N -0.69 -18.94 4.45 -436.91 -1.95 -20.88 16 18 C 0.49 14.45 7.90 87.66 0.69 15.14 16 19 O -0.58 -24.08 16.07 -3.05 -0.05 -24.13 16 20 C 0.09 1.69 6.48 85.63 0.56 2.24 16 21 N -0.44 -11.21 2.23 -518.54 -1.16 -12.37 16 22 C 0.18 4.65 12.57 180.10 2.26 6.91 16 23 N -0.52 -16.55 11.25 -187.89 -2.11 -18.66 16 24 C -0.03 -0.83 6.98 41.61 0.29 -0.54 16 25 C -0.02 -0.70 6.73 41.14 0.28 -0.43 16 26 C -0.04 -1.21 6.06 29.96 0.18 -1.03 16 27 C -0.11 -2.25 5.91 30.77 0.18 -2.07 16 28 C -0.12 -2.57 5.90 30.75 0.18 -2.39 16 29 C -0.03 -0.72 6.30 30.02 0.19 -0.53 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.03 1.03 7.91 -2.39 -0.02 1.01 16 33 H 0.07 1.03 6.48 -2.39 -0.02 1.01 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 1.59 8.05 -2.38 -0.02 1.57 16 37 H 0.04 1.19 7.98 -2.39 -0.02 1.17 16 38 H 0.24 14.79 8.31 -92.70 -0.77 14.02 16 39 H 0.00 0.10 7.41 -2.39 -0.02 0.08 16 40 H 0.00 -0.09 7.38 -2.39 -0.02 -0.11 16 41 H 0.41 8.29 7.11 -92.71 -0.66 7.63 16 42 H 0.18 1.35 8.13 -2.39 -0.02 1.33 16 43 H 0.14 2.07 7.96 -2.39 -0.02 2.05 16 44 H 0.24 3.86 8.06 -2.91 -0.02 3.83 16 45 H 0.08 1.94 8.00 -2.38 -0.02 1.92 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 48 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 49 H 0.04 1.16 8.11 -2.39 -0.02 1.14 16 50 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -84.61 407.87 3.27 -81.34 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.25 Total: 22.14 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 8.38 Total: 15.76 kcal Atomic # 7 Polarization: -135.52 SS G_CDS: -7.33 Total: -142.85 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -84.61 3.27 -81.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974821252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.935 kcal (2) G-P(sol) polarization free energy of solvation -84.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds