Wall clock time and date at job start Wed Apr 1 2020 04:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35196 * 126.00067 * 2 1 4 4 C 1.34569 * 107.61712 * 179.97438 * 3 2 1 5 5 C 1.40495 * 108.03938 * 0.09804 * 4 3 2 6 6 N 1.30128 * 108.22338 * 359.61060 * 5 4 3 7 7 C 1.50945 * 123.48985 * 179.70268 * 5 4 3 8 8 C 1.53378 * 108.20568 * 343.47150 * 7 5 4 9 9 C 1.53034 * 109.74190 * 50.63681 * 8 7 5 10 10 C 1.50884 * 128.32445 * 180.27220 * 4 3 2 11 11 H 1.09001 * 109.71775 * 283.02167 * 10 4 3 12 12 C 1.50693 * 109.71941 * 43.67783 * 10 4 3 13 13 O 1.21283 * 120.00200 * 120.00061 * 12 10 4 14 14 N 1.34768 * 120.00140 * 299.99768 * 12 10 4 15 15 C 1.46507 * 120.00404 * 180.02562 * 14 12 10 16 16 H 1.09002 * 110.63733 * 323.31470 * 15 14 12 17 17 C 1.54316 * 110.71860 * 86.45578 * 15 14 12 18 18 N 1.47019 * 107.27422 * 96.17398 * 17 15 14 19 19 C 1.36940 * 125.65114 * 178.90110 * 18 17 15 20 20 H 1.07999 * 120.00471 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99565 * 0.02752 * 19 18 17 22 22 N 1.31612 * 120.00282 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99419 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47400 * 89.99718 * 23 21 19 25 25 H 1.48504 * 109.46902 * 209.99901 * 23 21 19 26 26 H 1.48504 * 109.47087 * 329.99167 * 23 21 19 27 27 C 1.47428 * 108.70270 * 358.93510 * 18 17 15 28 28 C 1.54909 * 104.82829 * 24.13377 * 27 18 17 29 29 C 1.53002 * 111.00059 * 204.91652 * 28 27 18 30 30 C 1.52995 * 111.00845 * 81.06276 * 28 27 18 31 31 H 1.08999 * 109.46892 * 90.00428 * 1 2 3 32 32 H 1.09000 * 109.46803 * 209.99601 * 1 2 3 33 33 H 1.09000 * 109.47214 * 330.00394 * 1 2 3 34 34 H 1.07999 * 126.19336 * 359.97389 * 3 2 1 35 35 H 1.08994 * 109.71895 * 103.14952 * 7 5 4 36 36 H 1.08996 * 109.71590 * 223.79660 * 7 5 4 37 37 H 1.08999 * 109.42656 * 170.71597 * 8 7 5 38 38 H 1.08998 * 109.42476 * 290.60945 * 8 7 5 39 39 H 1.09000 * 109.43044 * 48.32525 * 9 8 7 40 40 H 1.09001 * 109.43104 * 168.23020 * 9 8 7 41 41 H 0.97001 * 120.00048 * 0.02562 * 14 12 10 42 42 H 1.09006 * 109.88036 * 215.58836 * 17 15 14 43 43 H 1.08997 * 109.88477 * 336.59763 * 17 15 14 44 44 H 0.97001 * 120.00149 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.36385 * 142.96585 * 27 18 17 46 46 H 1.08993 * 110.36886 * 265.29525 * 27 18 17 47 47 H 1.09000 * 109.47056 * 172.19453 * 29 28 27 48 48 H 1.08998 * 109.46817 * 292.19260 * 29 28 27 49 49 H 1.08994 * 109.47284 * 52.19685 * 29 28 27 50 50 H 1.09008 * 109.47261 * 307.80224 * 30 28 27 51 51 H 1.08998 * 109.47156 * 67.79919 * 30 28 27 52 52 H 1.08997 * 109.47382 * 187.80016 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5367 0.6693 0.0006 5 6 3.5283 -0.7356 -0.0013 6 7 2.2899 -1.1351 0.0054 7 6 4.7821 -1.5760 -0.0079 8 6 5.9561 -0.6820 -0.4262 9 6 5.9639 0.5916 0.4223 10 6 4.7980 1.4975 0.0064 11 1 4.9803 1.8969 -0.9912 12 6 4.6580 2.6300 0.9907 13 8 5.4291 2.7227 1.9222 14 7 3.6760 3.5400 0.8357 15 6 3.5403 4.6414 1.7922 16 1 3.7781 4.3052 2.8015 17 6 4.4371 5.8301 1.3871 18 7 3.5976 6.7736 0.6344 19 6 4.0115 7.9712 0.1151 20 1 3.3147 8.5957 -0.4242 21 6 5.3268 8.3826 0.2820 22 7 6.1758 7.6218 0.9396 23 14 5.8915 10.0160 -0.4270 24 1 5.6894 11.0889 0.5795 25 1 7.3319 9.9316 -0.7782 26 1 5.1022 10.3258 -1.6462 27 6 2.2362 6.2172 0.5318 28 6 2.1130 5.2470 1.7332 29 6 1.0684 4.1634 1.4579 30 6 1.7859 6.0066 3.0203 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.9295 2.1220 -0.0004 35 1 4.9619 -1.9760 0.9899 36 1 4.6722 -2.3950 -0.7187 37 1 6.8922 -1.2208 -0.2798 38 1 5.8519 -0.4153 -1.4779 39 1 5.8600 0.3269 1.4745 40 1 6.9048 1.1212 0.2727 41 1 3.0591 3.4658 0.0909 42 1 4.8333 6.3162 2.2786 43 1 5.2573 5.4791 0.7609 44 1 7.0948 7.9095 1.0565 45 1 1.4947 7.0124 0.6088 46 1 2.1173 5.6759 -0.4067 47 1 1.0994 3.4185 2.2531 48 1 0.0772 4.6152 1.4217 49 1 1.2847 3.6845 0.5030 50 1 2.5034 6.8157 3.1571 51 1 0.7800 6.4208 2.9522 52 1 1.8412 5.3246 3.8688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974960133.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:11 Heat of formation + Delta-G solvation = 63.465486 kcal Electronic energy + Delta-G solvation = -32541.853997 eV Core-core repulsion = 28543.477949 eV Total energy + Delta-G solvation = -3998.376048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71469 -39.70775 -38.12347 -36.34234 -33.92831 -33.12684 -32.79505 -31.81415 -30.70448 -28.75820 -28.14034 -27.31150 -26.73520 -25.65482 -24.18722 -23.19596 -21.90519 -21.22652 -20.38669 -19.87640 -18.88780 -18.63431 -16.92301 -16.76738 -16.51328 -15.72126 -15.61662 -15.09442 -15.06225 -14.63686 -14.31508 -13.95052 -13.91813 -13.63913 -13.49789 -13.31225 -12.96839 -12.96335 -12.79231 -12.57428 -12.47269 -12.02247 -11.99377 -11.77980 -11.71703 -11.37842 -11.29427 -11.05910 -11.01281 -10.96159 -10.85270 -10.77991 -10.44272 -10.39971 -10.23792 -10.00813 -9.88677 -9.64729 -9.44844 -9.32247 -8.62390 -8.40608 -8.33207 -6.81729 -5.67576 -3.02813 1.76165 2.32570 2.59693 3.15069 3.40953 3.45700 3.48297 3.63385 4.18753 4.50668 4.55500 4.71007 4.83260 4.86058 4.90372 4.92798 4.93882 5.15975 5.22055 5.24356 5.26439 5.39147 5.42661 5.51622 5.53503 5.56599 5.62075 5.73305 5.77275 5.83884 5.85676 5.96184 6.00365 6.04947 6.10234 6.15707 6.18982 6.21918 6.38147 6.41095 6.54975 6.56223 6.58619 6.65072 6.76150 6.86365 6.96167 7.57268 7.60314 7.67590 7.85261 7.98453 8.27366 8.70379 9.23390 9.84033 10.49329 11.42719 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003485 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.871738 B = 8032.718104 C = 9320.829540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.382 5.382 3 C 0.060 3.940 4 C -0.226 4.226 5 C 0.088 3.912 6 N -0.292 5.292 7 C -0.038 4.038 8 C -0.115 4.115 9 C -0.098 4.098 10 C -0.028 4.028 11 H 0.101 0.899 12 C 0.523 3.477 13 O -0.535 6.535 14 N -0.713 5.713 15 C 0.124 3.876 16 H 0.086 0.914 17 C 0.176 3.824 18 N -0.602 5.602 19 C -0.232 4.232 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.916 5.916 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.145 3.855 28 C -0.090 4.090 29 C -0.132 4.132 30 C -0.125 4.125 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.173 0.827 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.389 0.611 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.253 0.747 45 H 0.040 0.960 46 H 0.013 0.987 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.045 0.955 50 H 0.070 0.930 51 H 0.052 0.948 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.230 -17.165 -1.939 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.164 5.164 3 C -0.085 4.085 4 C -0.238 4.238 5 C -0.080 4.080 6 N -0.113 5.113 7 C -0.077 4.077 8 C -0.153 4.153 9 C -0.136 4.136 10 C -0.050 4.050 11 H 0.119 0.881 12 C 0.308 3.692 13 O -0.411 6.411 14 N -0.365 5.365 15 C 0.020 3.980 16 H 0.104 0.896 17 C 0.051 3.949 18 N -0.328 5.328 19 C -0.360 4.360 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.563 5.563 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.018 3.982 28 C -0.091 4.091 29 C -0.189 4.189 30 C -0.183 4.183 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.190 0.810 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.225 0.775 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.031 0.969 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.063 0.937 50 H 0.089 0.911 51 H 0.071 0.929 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.439 -17.946 -1.264 20.800 hybrid contribution 0.333 1.772 -0.830 1.985 sum -10.106 -16.174 -2.094 19.187 Atomic orbital electron populations 1.21842 0.74178 1.04484 1.03289 1.48435 1.06365 1.03296 1.58276 1.22245 0.90819 0.93479 1.01916 1.19682 0.93466 0.93753 1.16899 1.22303 0.93364 0.93460 0.98902 1.77007 1.01148 1.08051 1.25131 1.20153 0.88467 0.96333 1.02761 1.21595 0.97418 0.95942 1.00354 1.21383 0.97019 0.94515 1.00681 1.19770 0.92856 0.92998 0.99420 0.88098 1.20335 0.80428 0.82428 0.86007 1.90692 1.42256 1.75625 1.32574 1.46148 1.32692 1.27519 1.30122 1.22462 0.95570 0.87520 0.92495 0.89592 1.21507 0.91017 0.85962 0.96441 1.44430 1.04532 1.19694 1.64173 1.19009 0.94321 0.93953 1.28739 0.90542 1.24803 0.96225 0.98584 1.00596 1.69964 1.04286 1.36822 1.45261 0.86161 0.77862 0.83434 0.78513 1.21646 1.21712 1.20800 1.21611 0.89235 0.94145 0.93196 1.22001 0.93562 0.95775 0.97779 1.21764 0.98661 0.98274 1.00241 1.21589 1.01448 1.00267 0.94996 0.90814 0.89403 0.89419 0.81013 0.89791 0.90094 0.90633 0.91413 0.90647 0.90590 0.77489 0.92949 0.93304 0.93682 0.94138 0.96910 0.92727 0.92390 0.93663 0.91096 0.92922 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 11.47 59.85 0.69 1.41 16 2 N -0.38 -4.37 4.02 -68.29 -0.27 -4.64 16 3 C 0.06 0.71 10.49 -17.37 -0.18 0.53 16 4 C -0.23 -2.95 5.41 -104.98 -0.57 -3.52 16 5 C 0.09 1.12 7.10 -82.34 -0.58 0.54 16 6 N -0.29 -3.91 12.56 33.75 0.42 -3.48 16 7 C -0.04 -0.38 6.31 -27.57 -0.17 -0.55 16 8 C -0.12 -1.09 5.86 -26.52 -0.16 -1.24 16 9 C -0.10 -1.23 4.61 -26.51 -0.12 -1.35 16 10 C -0.03 -0.38 2.90 -92.63 -0.27 -0.65 16 11 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.52 9.05 7.08 -10.99 -0.08 8.97 16 13 O -0.54 -11.33 15.58 5.56 0.09 -11.24 16 14 N -0.71 -11.68 3.98 -52.03 -0.21 -11.89 16 15 C 0.12 2.33 2.51 -66.09 -0.17 2.17 16 16 H 0.09 1.70 7.60 -51.93 -0.39 1.31 16 17 C 0.18 4.28 4.79 -3.07 -0.01 4.27 16 18 N -0.60 -14.78 3.38 -170.08 -0.57 -15.35 16 19 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 22 N -0.92 -27.17 10.31 55.49 0.57 -26.60 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 C 0.14 2.77 6.14 -2.53 -0.02 2.76 16 28 C -0.09 -1.43 0.83 -152.36 -0.13 -1.55 16 29 C -0.13 -1.56 8.17 37.16 0.30 -1.25 16 30 C -0.13 -1.94 8.57 37.16 0.32 -1.63 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.17 1.79 3.92 -52.49 -0.21 1.58 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.07 1.04 7.77 -51.93 -0.40 0.64 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.39 5.53 5.02 -40.82 -0.20 5.32 16 42 H 0.05 1.45 7.38 -51.93 -0.38 1.07 16 43 H 0.05 1.37 7.41 -51.93 -0.38 0.99 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 46 H 0.01 0.25 7.98 -51.93 -0.41 -0.17 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.04 0.48 4.46 -51.93 -0.23 0.25 16 50 H 0.07 1.32 7.91 -51.92 -0.41 0.91 16 51 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -34.40 398.17 -8.89 -43.28 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.49 Total: 4.70 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.40 Total: 2.15 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.06 Total: -61.97 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.40 -8.89 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974960133.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.747 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds