Wall clock time and date at job start Wed Apr 1 2020 04:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35196 * 126.00067 * 2 1 4 4 C 1.34569 * 107.61712 * 179.97438 * 3 2 1 5 5 C 1.40495 * 108.03938 * 0.09804 * 4 3 2 6 6 N 1.30128 * 108.22338 * 359.61060 * 5 4 3 7 7 C 1.50945 * 123.48985 * 179.70268 * 5 4 3 8 8 C 1.53378 * 108.20568 * 343.47150 * 7 5 4 9 9 C 1.53034 * 109.74190 * 50.63681 * 8 7 5 10 10 C 1.50884 * 128.32445 * 180.27220 * 4 3 2 11 11 H 1.09001 * 109.71775 * 283.02167 * 10 4 3 12 12 C 1.50693 * 109.71941 * 43.67783 * 10 4 3 13 13 O 1.21283 * 120.00200 * 120.00061 * 12 10 4 14 14 N 1.34768 * 120.00140 * 299.99768 * 12 10 4 15 15 C 1.46507 * 120.00404 * 180.02562 * 14 12 10 16 16 H 1.09002 * 110.63733 * 323.31470 * 15 14 12 17 17 C 1.54316 * 110.71860 * 86.45578 * 15 14 12 18 18 N 1.47019 * 107.27422 * 96.17398 * 17 15 14 19 19 C 1.36940 * 125.65114 * 178.90110 * 18 17 15 20 20 H 1.07999 * 120.00471 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99565 * 0.02752 * 19 18 17 22 22 N 1.31612 * 120.00282 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99419 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47400 * 89.99718 * 23 21 19 25 25 H 1.48504 * 109.46902 * 209.99901 * 23 21 19 26 26 H 1.48504 * 109.47087 * 329.99167 * 23 21 19 27 27 C 1.47428 * 108.70270 * 358.93510 * 18 17 15 28 28 C 1.54909 * 104.82829 * 24.13377 * 27 18 17 29 29 C 1.53002 * 111.00059 * 204.91652 * 28 27 18 30 30 C 1.52995 * 111.00845 * 81.06276 * 28 27 18 31 31 H 1.08999 * 109.46892 * 90.00428 * 1 2 3 32 32 H 1.09000 * 109.46803 * 209.99601 * 1 2 3 33 33 H 1.09000 * 109.47214 * 330.00394 * 1 2 3 34 34 H 1.07999 * 126.19336 * 359.97389 * 3 2 1 35 35 H 1.08994 * 109.71895 * 103.14952 * 7 5 4 36 36 H 1.08996 * 109.71590 * 223.79660 * 7 5 4 37 37 H 1.08999 * 109.42656 * 170.71597 * 8 7 5 38 38 H 1.08998 * 109.42476 * 290.60945 * 8 7 5 39 39 H 1.09000 * 109.43044 * 48.32525 * 9 8 7 40 40 H 1.09001 * 109.43104 * 168.23020 * 9 8 7 41 41 H 0.97001 * 120.00048 * 0.02562 * 14 12 10 42 42 H 1.09006 * 109.88036 * 215.58836 * 17 15 14 43 43 H 1.08997 * 109.88477 * 336.59763 * 17 15 14 44 44 H 0.97001 * 120.00149 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.36385 * 142.96585 * 27 18 17 46 46 H 1.08993 * 110.36886 * 265.29525 * 27 18 17 47 47 H 1.09000 * 109.47056 * 172.19453 * 29 28 27 48 48 H 1.08998 * 109.46817 * 292.19260 * 29 28 27 49 49 H 1.08994 * 109.47284 * 52.19685 * 29 28 27 50 50 H 1.09008 * 109.47261 * 307.80224 * 30 28 27 51 51 H 1.08998 * 109.47156 * 67.79919 * 30 28 27 52 52 H 1.08997 * 109.47382 * 187.80016 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5367 0.6693 0.0006 5 6 3.5283 -0.7356 -0.0013 6 7 2.2899 -1.1351 0.0054 7 6 4.7821 -1.5760 -0.0079 8 6 5.9561 -0.6820 -0.4262 9 6 5.9639 0.5916 0.4223 10 6 4.7980 1.4975 0.0064 11 1 4.9803 1.8969 -0.9912 12 6 4.6580 2.6300 0.9907 13 8 5.4291 2.7227 1.9222 14 7 3.6760 3.5400 0.8357 15 6 3.5403 4.6414 1.7922 16 1 3.7781 4.3052 2.8015 17 6 4.4371 5.8301 1.3871 18 7 3.5976 6.7736 0.6344 19 6 4.0115 7.9712 0.1151 20 1 3.3147 8.5957 -0.4242 21 6 5.3268 8.3826 0.2820 22 7 6.1758 7.6218 0.9396 23 14 5.8915 10.0160 -0.4270 24 1 5.6894 11.0889 0.5795 25 1 7.3319 9.9316 -0.7782 26 1 5.1022 10.3258 -1.6462 27 6 2.2362 6.2172 0.5318 28 6 2.1130 5.2470 1.7332 29 6 1.0684 4.1634 1.4579 30 6 1.7859 6.0066 3.0203 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.9295 2.1220 -0.0004 35 1 4.9619 -1.9760 0.9899 36 1 4.6722 -2.3950 -0.7187 37 1 6.8922 -1.2208 -0.2798 38 1 5.8519 -0.4153 -1.4779 39 1 5.8600 0.3269 1.4745 40 1 6.9048 1.1212 0.2727 41 1 3.0591 3.4658 0.0909 42 1 4.8333 6.3162 2.2786 43 1 5.2573 5.4791 0.7609 44 1 7.0948 7.9095 1.0565 45 1 1.4947 7.0124 0.6088 46 1 2.1173 5.6759 -0.4067 47 1 1.0994 3.4185 2.2531 48 1 0.0772 4.6152 1.4217 49 1 1.2847 3.6845 0.5030 50 1 2.5034 6.8157 3.1571 51 1 0.7800 6.4208 2.9522 52 1 1.8412 5.3246 3.8688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974960133.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:10 Heat of formation + Delta-G solvation = 41.322340 kcal Electronic energy + Delta-G solvation = -32542.814196 eV Core-core repulsion = 28543.477949 eV Total energy + Delta-G solvation = -3999.336247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.65313 -41.13584 -39.57014 -37.33160 -35.72117 -34.60854 -33.66063 -32.76109 -32.58829 -29.80936 -29.65186 -28.23269 -27.85416 -27.38968 -25.52844 -24.49960 -22.85693 -22.44504 -21.76958 -21.39867 -20.07929 -19.75313 -18.68008 -18.04575 -17.69923 -17.17704 -16.70362 -16.45673 -16.03478 -15.98956 -15.66399 -15.42532 -15.26352 -14.97450 -14.75251 -14.37347 -13.99999 -13.87135 -13.80002 -13.73339 -13.51458 -13.44675 -13.26898 -13.12085 -12.94589 -12.82143 -12.69401 -12.65710 -12.59093 -12.12299 -12.10226 -11.94235 -11.84374 -11.75788 -11.70780 -11.51831 -11.40499 -11.31592 -10.83996 -10.68207 -10.21616 -9.95602 -9.28586 -8.87438 -7.81728 -5.18544 0.87561 1.44823 1.46819 1.50995 1.55451 1.66302 1.80157 2.30765 2.50313 3.35259 3.36563 3.48403 3.69107 3.70569 3.76307 3.91322 3.96387 4.00534 4.11256 4.20078 4.33794 4.38680 4.43121 4.47961 4.49707 4.53995 4.64212 4.71404 4.72219 4.73577 4.83788 4.85065 4.90521 4.94924 5.02529 5.04819 5.10586 5.16169 5.17063 5.22031 5.25658 5.31702 5.33916 5.47435 5.47845 5.55193 5.66716 5.74124 5.79135 6.08081 6.19355 6.59211 6.71312 7.09889 7.32423 7.79872 8.43950 9.27186 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003485 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.871738 B = 8032.718104 C = 9320.829540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.379 5.379 3 C 0.064 3.936 4 C -0.248 4.248 5 C 0.079 3.921 6 N -0.317 5.317 7 C -0.038 4.038 8 C -0.104 4.104 9 C -0.098 4.098 10 C -0.019 4.019 11 H 0.110 0.890 12 C 0.517 3.483 13 O -0.581 6.581 14 N -0.700 5.700 15 C 0.137 3.863 16 H 0.072 0.928 17 C 0.195 3.805 18 N -0.620 5.620 19 C -0.237 4.237 20 H 0.087 0.913 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.976 3.024 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.265 1.265 27 C 0.138 3.862 28 C -0.074 4.074 29 C -0.125 4.125 30 C -0.123 4.123 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.187 0.813 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.403 0.597 42 H 0.002 0.998 43 H 0.000 1.000 44 H 0.242 0.758 45 H 0.049 0.951 46 H 0.031 0.969 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.028 0.972 51 H 0.080 0.920 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.511 -18.365 -3.363 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.161 5.161 3 C -0.082 4.082 4 C -0.260 4.260 5 C -0.089 4.089 6 N -0.138 5.138 7 C -0.077 4.077 8 C -0.142 4.142 9 C -0.136 4.136 10 C -0.041 4.041 11 H 0.128 0.872 12 C 0.304 3.696 13 O -0.460 6.460 14 N -0.353 5.353 15 C 0.031 3.969 16 H 0.091 0.909 17 C 0.068 3.932 18 N -0.346 5.346 19 C -0.366 4.366 20 H 0.105 0.895 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.804 3.196 24 H -0.214 1.214 25 H -0.227 1.227 26 H -0.189 1.189 27 C 0.014 3.986 28 C -0.075 4.075 29 C -0.183 4.183 30 C -0.181 4.181 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.204 0.796 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.242 0.758 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.084 0.916 48 H 0.105 0.895 49 H 0.078 0.922 50 H 0.047 0.953 51 H 0.099 0.901 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.813 -19.170 -2.727 23.784 hybrid contribution 1.279 2.176 -0.367 2.551 sum -12.534 -16.994 -3.094 21.341 Atomic orbital electron populations 1.22241 0.71726 1.06004 1.04850 1.48799 1.07745 1.02563 1.56988 1.22432 0.90616 0.94211 1.00932 1.19672 0.93458 0.94006 1.18871 1.22687 0.94052 0.93620 0.98500 1.76965 1.01569 1.09247 1.26067 1.20258 0.87399 0.96481 1.03533 1.21547 0.98470 0.94346 0.99868 1.21381 0.96045 0.95834 1.00326 1.19701 0.94198 0.91850 0.98358 0.87204 1.21122 0.79451 0.83044 0.85936 1.90669 1.43833 1.76814 1.34732 1.45982 1.32841 1.26385 1.30058 1.22067 0.96609 0.86095 0.92132 0.90942 1.21052 0.91088 0.87655 0.93359 1.44671 1.06950 1.19213 1.63751 1.19476 0.94489 0.94955 1.27707 0.89478 1.25656 0.96659 1.02076 1.01711 1.70239 1.03986 1.38647 1.47275 0.85114 0.76791 0.79380 0.78268 1.21441 1.22680 1.18948 1.21897 0.86399 0.95108 0.95232 1.21974 0.92793 0.96099 0.96678 1.21747 0.98173 0.96943 1.01390 1.21586 1.01729 0.99353 0.95437 0.89207 0.88878 0.87002 0.79598 0.89400 0.88360 0.88496 0.90721 0.92444 0.91690 0.75818 0.97979 0.98185 0.94823 0.93222 0.95082 0.91621 0.89522 0.92234 0.95266 0.90082 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 11.47 127.77 1.47 2.41 16 2 N -0.38 -7.61 4.02 -369.97 -1.49 -9.10 16 3 C 0.06 1.36 10.49 83.33 0.87 2.23 16 4 C -0.25 -6.11 5.41 -20.10 -0.11 -6.22 16 5 C 0.08 1.89 7.10 43.44 0.31 2.20 16 6 N -0.32 -7.83 12.56 -47.13 -0.59 -8.42 16 7 C -0.04 -0.68 6.31 30.05 0.19 -0.49 16 8 C -0.10 -1.83 5.86 30.73 0.18 -1.65 16 9 C -0.10 -2.47 4.61 30.74 0.14 -2.33 16 10 C -0.02 -0.51 2.90 -12.10 -0.04 -0.55 16 11 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 12 C 0.52 18.35 7.08 87.66 0.62 18.97 16 13 O -0.58 -26.01 15.58 -3.04 -0.05 -26.05 16 14 N -0.70 -22.79 3.98 -436.93 -1.74 -24.53 16 15 C 0.14 5.23 2.51 46.18 0.12 5.35 16 16 H 0.07 2.99 7.60 -2.39 -0.02 2.97 16 17 C 0.19 10.05 4.79 86.73 0.42 10.46 16 18 N -0.62 -31.05 3.38 -692.00 -2.34 -33.38 16 19 C -0.24 -13.17 10.28 84.03 0.86 -12.31 16 20 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 21 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 22 N -0.95 -59.87 10.31 21.65 0.22 -59.65 16 23 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 26 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 27 C 0.14 5.06 6.14 86.85 0.53 5.60 16 28 C -0.07 -2.22 0.83 -50.79 -0.04 -2.26 16 29 C -0.13 -2.38 8.17 71.98 0.59 -1.79 16 30 C -0.12 -3.64 8.57 71.98 0.62 -3.03 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.19 3.20 3.92 -2.91 -0.01 3.19 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 39 H 0.06 1.65 7.77 -2.39 -0.02 1.63 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 41 H 0.40 10.71 5.02 -92.71 -0.47 10.25 16 42 H 0.00 0.12 7.38 -2.38 -0.02 0.11 16 43 H 0.00 0.00 7.41 -2.39 -0.02 -0.02 16 44 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 46 H 0.03 1.06 7.98 -2.39 -0.02 1.04 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.06 0.97 4.46 -2.39 -0.01 0.96 16 50 H 0.03 1.09 7.91 -2.38 -0.02 1.07 16 51 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -81.22 398.17 3.70 -77.53 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.46 Total: 21.94 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 7.19 Total: 13.10 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -5.94 Total: -135.09 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -81.22 3.70 -77.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974960133.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.848 kcal (2) G-P(sol) polarization free energy of solvation -81.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds