Wall clock time and date at job start Wed Apr 1 2020 04:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40295 * 126.09237 * 2 1 4 4 C 1.31071 * 108.26793 * 179.90718 * 3 2 1 5 5 C 1.39298 * 108.08111 * 359.97438 * 4 3 2 6 6 C 1.34323 * 126.08820 * 179.97438 * 2 1 3 7 7 C 1.50825 * 128.03734 * 0.23346 * 6 2 1 8 8 C 1.53365 * 108.38296 * 163.36342 * 7 6 2 9 9 H 1.09002 * 109.45879 * 289.93198 * 8 7 6 10 10 C 1.50706 * 109.46291 * 169.95044 * 8 7 6 11 11 O 1.21282 * 119.99874 * 359.96630 * 10 8 7 12 12 N 1.34775 * 119.99872 * 179.97438 * 10 8 7 13 13 C 1.46495 * 120.00072 * 179.97438 * 12 10 8 14 14 H 1.09001 * 110.64185 * 328.14215 * 13 12 10 15 15 C 1.54322 * 110.71884 * 91.47822 * 13 12 10 16 16 N 1.47027 * 107.27274 * 96.17142 * 15 13 12 17 17 C 1.36934 * 125.65276 * 178.89601 * 16 15 13 18 18 H 1.07999 * 120.00161 * 174.88764 * 17 16 15 19 19 C 1.38813 * 119.99920 * 354.87564 * 17 16 15 20 20 N 1.31620 * 119.99679 * 7.06914 * 19 17 16 21 21 Si 1.86790 * 120.00177 * 187.06401 * 19 17 16 22 22 H 1.48504 * 109.47329 * 94.99247 * 21 19 17 23 23 H 1.48497 * 109.47483 * 214.98914 * 21 19 17 24 24 H 1.48506 * 109.47263 * 334.99274 * 21 19 17 25 25 C 1.47435 * 108.69930 * 358.94297 * 16 15 13 26 26 C 1.54902 * 104.83218 * 24.12431 * 25 16 15 27 27 C 1.53007 * 111.00590 * 204.91671 * 26 25 16 28 28 C 1.53009 * 111.00376 * 81.06765 * 26 25 16 29 29 C 1.53109 * 109.50705 * 49.94147 * 8 7 6 30 30 C 1.50837 * 127.89961 * 180.09120 * 5 4 3 31 31 H 1.09001 * 109.47252 * 89.97747 * 1 2 3 32 32 H 1.08994 * 109.47649 * 209.98091 * 1 2 3 33 33 H 1.09002 * 109.47161 * 329.98301 * 1 2 3 34 34 H 1.08000 * 125.96105 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.67894 * 43.64011 * 7 6 2 36 36 H 1.09005 * 109.68123 * 283.08583 * 7 6 2 37 37 H 0.96998 * 119.99837 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.88759 * 215.58668 * 15 13 12 39 39 H 1.08996 * 109.88631 * 336.59981 * 15 13 12 40 40 H 0.97003 * 119.99827 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.35892 * 265.28878 * 25 16 15 42 42 H 1.08993 * 110.36548 * 142.97147 * 25 16 15 43 43 H 1.08996 * 109.47017 * 172.19912 * 27 26 25 44 44 H 1.08995 * 109.46749 * 292.20245 * 27 26 25 45 45 H 1.08997 * 109.46678 * 52.19881 * 27 26 25 46 46 H 1.08998 * 109.46781 * 307.80511 * 28 26 25 47 47 H 1.09000 * 109.46841 * 67.80118 * 28 26 25 48 48 H 1.08992 * 109.46949 * 187.79834 * 28 26 25 49 49 H 1.08994 * 109.46233 * 49.72904 * 29 8 7 50 50 H 1.08999 * 109.46699 * 169.71443 * 29 8 7 51 51 H 1.08998 * 109.68335 * 43.73324 * 30 5 4 52 52 H 1.08991 * 109.71866 * 283.18939 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5392 0.7325 0.0020 5 6 3.5455 -0.6605 0.0039 6 6 2.2562 -1.0855 0.0005 7 6 1.8436 -2.5362 -0.0037 8 6 3.0540 -3.3820 -0.4181 9 1 3.2704 -3.2139 -1.4731 10 6 2.7475 -4.8406 -0.1944 11 8 1.6698 -5.1722 0.2522 12 7 3.6712 -5.7763 -0.4906 13 6 3.3736 -7.1941 -0.2727 14 1 2.7047 -7.3198 0.5787 15 6 2.7701 -7.8269 -1.5443 16 7 3.8699 -8.4753 -2.2734 17 6 3.7491 -9.1707 -3.4468 18 1 4.6310 -9.5409 -3.9484 19 6 2.4930 -9.4000 -3.9915 20 7 1.4313 -8.8332 -3.4587 21 14 2.3097 -10.5127 -5.4805 22 1 1.9763 -11.8887 -5.0323 23 1 1.2223 -9.9989 -6.3516 24 1 3.5847 -10.5353 -6.2416 25 6 5.1244 -8.2537 -1.5312 26 6 4.6808 -8.0043 -0.0681 27 6 5.7244 -7.1797 0.6884 28 6 4.4006 -9.3245 0.6527 29 6 4.2695 -2.9814 0.4223 30 6 4.7398 -1.5817 0.0085 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8898 0.5141 34 1 4.4106 1.3705 0.0022 35 1 1.0311 -2.6847 -0.7150 36 1 1.5164 -2.8277 0.9944 37 1 4.5333 -5.5109 -0.8473 38 1 2.0199 -8.5683 -1.2692 39 1 2.3167 -7.0534 -2.1640 40 1 0.5536 -8.9931 -3.8395 41 1 5.6478 -7.3815 -1.9229 42 1 5.7607 -9.1367 -1.5895 43 1 5.3290 -6.9016 1.6653 44 1 6.6305 -7.7714 0.8181 45 1 5.9568 -6.2789 0.1206 46 1 3.7083 -9.9222 0.0599 47 1 5.3339 -9.8724 0.7831 48 1 3.9603 -9.1194 1.6284 49 1 3.9954 -2.9749 1.4772 50 1 5.0749 -3.6978 0.2607 51 1 5.4815 -1.2178 0.7195 52 1 5.1767 -1.6223 -0.9892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974967433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:46 Heat of formation + Delta-G solvation = 55.741995 kcal Electronic energy + Delta-G solvation = -31699.984895 eV Core-core repulsion = 27701.273931 eV Total energy + Delta-G solvation = -3998.710964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.68958 -39.93061 -38.20522 -36.10927 -33.90876 -33.76688 -33.00547 -30.72085 -30.39935 -29.93313 -27.98781 -26.81946 -26.72830 -25.64266 -24.37975 -23.10930 -22.50365 -21.07607 -20.40068 -19.81850 -18.89201 -18.58859 -17.27382 -16.70723 -16.33184 -15.83931 -15.67850 -15.01941 -14.63475 -14.48423 -14.28371 -13.95145 -13.89209 -13.77452 -13.54124 -13.47246 -13.17614 -13.04880 -12.84895 -12.55907 -12.53814 -12.07065 -11.97831 -11.96718 -11.71246 -11.65245 -11.34930 -11.08588 -11.03160 -10.98172 -10.84956 -10.79131 -10.63231 -10.39045 -10.24786 -10.01893 -9.88562 -9.66122 -9.42478 -9.34860 -8.61336 -8.43260 -8.31578 -6.82974 -5.71188 -3.04539 1.74128 2.34786 2.67286 2.97212 3.39716 3.44970 3.47316 3.49747 4.34191 4.43567 4.49965 4.57262 4.73963 4.88933 4.93870 4.95099 4.96345 5.20123 5.20485 5.24027 5.27717 5.29777 5.30574 5.43117 5.50985 5.54079 5.63992 5.73273 5.79281 5.80162 5.81254 5.91718 5.93534 6.02402 6.10859 6.16218 6.19123 6.20520 6.24402 6.38924 6.55130 6.58242 6.60718 6.67585 6.74805 6.89041 6.95925 7.56823 7.58480 7.62064 7.81718 7.93881 8.25101 8.60290 9.21261 9.82275 10.48058 11.39771 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.002837 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.268777 B = 9868.650009 C =10983.411149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.368 5.368 3 N -0.306 5.306 4 C 0.054 3.946 5 C -0.246 4.246 6 C 0.093 3.907 7 C -0.036 4.036 8 C -0.100 4.100 9 H 0.102 0.898 10 C 0.519 3.481 11 O -0.543 6.543 12 N -0.706 5.706 13 C 0.124 3.876 14 H 0.089 0.911 15 C 0.174 3.826 16 N -0.602 5.602 17 C -0.230 4.230 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.916 5.916 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.143 3.857 26 C -0.089 4.089 27 C -0.130 4.130 28 C -0.126 4.126 29 C -0.109 4.109 30 C -0.036 4.036 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.181 0.819 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.396 0.604 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.252 0.748 41 H 0.015 0.985 42 H 0.041 0.959 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.047 0.953 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 14.714 10.580 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.149 5.149 3 N -0.127 5.127 4 C -0.131 4.131 5 C -0.257 4.257 6 C -0.036 4.036 7 C -0.075 4.075 8 C -0.122 4.122 9 H 0.120 0.880 10 C 0.304 3.696 11 O -0.421 6.421 12 N -0.357 5.357 13 C 0.019 3.981 14 H 0.107 0.893 15 C 0.049 3.951 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.563 5.563 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.207 1.207 25 C 0.017 3.983 26 C -0.091 4.091 27 C -0.188 4.188 28 C -0.184 4.184 29 C -0.147 4.147 30 C -0.075 4.075 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.198 0.802 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.231 0.769 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.131 15.426 10.739 19.244 hybrid contribution 0.636 -1.037 -1.178 1.694 sum 4.767 14.389 9.561 17.921 Atomic orbital electron populations 1.21885 0.74305 1.04539 1.03584 1.48178 1.06487 1.03438 1.56773 1.77495 1.01561 1.07626 1.26045 1.23539 0.95179 0.94452 0.99899 1.19899 0.94152 0.93790 1.17889 1.20960 0.91076 0.90677 1.00863 1.20082 0.97729 0.85656 1.04056 1.21279 0.96305 0.91919 1.02649 0.87987 1.20272 0.84355 0.87278 0.77695 1.90693 1.23433 1.82600 1.45358 1.45978 1.17784 1.06788 1.65114 1.22477 0.96207 0.78712 1.00705 0.89346 1.21516 0.89796 0.95664 0.88126 1.44436 1.01766 1.62504 1.24163 1.19017 0.92606 1.26777 0.97433 0.90494 1.24820 0.95548 1.00423 0.99459 1.69980 0.98063 1.45863 1.42419 0.86156 0.77261 0.80626 0.82059 1.21651 1.21854 1.20704 1.21638 0.90335 0.97706 0.88617 1.22012 0.94742 0.95586 0.96765 1.21670 0.98255 0.99244 0.99602 1.21599 1.01628 0.95937 0.99206 1.21600 0.96194 0.96982 0.99947 1.19955 0.93925 0.91943 1.01636 0.90602 0.89247 0.89323 0.80200 0.89556 0.88666 0.76926 0.92788 0.93656 0.93740 0.96753 0.94085 0.92878 0.92721 0.93046 0.91216 0.92918 0.93383 0.91077 0.90743 0.90790 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.32 59.84 0.68 1.48 16 2 N -0.37 -4.35 4.00 -63.88 -0.26 -4.60 16 3 N -0.31 -3.94 12.59 30.55 0.38 -3.55 16 4 C 0.05 0.59 12.00 -17.48 -0.21 0.38 16 5 C -0.25 -2.71 5.91 -105.05 -0.62 -3.33 16 6 C 0.09 1.10 6.73 -82.33 -0.55 0.54 16 7 C -0.04 -0.42 4.56 -27.63 -0.13 -0.55 16 8 C -0.10 -1.17 2.50 -91.52 -0.23 -1.40 16 9 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 10 C 0.52 8.07 7.15 -10.98 -0.08 7.99 16 11 O -0.54 -10.53 15.47 5.56 0.09 -10.44 16 12 N -0.71 -10.85 4.27 -52.03 -0.22 -11.07 16 13 C 0.12 2.25 2.59 -66.10 -0.17 2.08 16 14 H 0.09 1.70 7.45 -51.93 -0.39 1.31 16 15 C 0.17 4.16 4.80 -3.06 -0.01 4.15 16 16 N -0.60 -14.63 3.38 -170.07 -0.58 -15.20 16 17 C -0.23 -6.25 10.27 -15.06 -0.15 -6.40 16 18 H 0.08 2.03 7.84 -52.49 -0.41 1.61 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 20 N -0.92 -26.90 10.36 55.49 0.57 -26.32 16 21 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.14 2.73 6.12 -2.53 -0.02 2.72 16 26 C -0.09 -1.42 0.83 -152.36 -0.13 -1.54 16 27 C -0.13 -1.57 8.22 37.16 0.31 -1.26 16 28 C -0.13 -1.96 8.57 37.16 0.32 -1.64 16 29 C -0.11 -1.02 5.17 -26.49 -0.14 -1.16 16 30 C -0.04 -0.31 6.28 -27.64 -0.17 -0.49 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.16 7.79 -51.93 -0.40 0.75 16 37 H 0.40 5.24 6.44 -40.82 -0.26 4.97 16 38 H 0.05 1.47 7.30 -51.93 -0.38 1.09 16 39 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.01 0.27 7.98 -51.93 -0.41 -0.14 16 42 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.56 6.48 -51.93 -0.34 0.22 16 46 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 50 H 0.07 0.61 7.30 -51.93 -0.38 0.23 16 51 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 405.28 15.07 6.11 6.11 Total: -1.00 -33.87 405.28 -9.14 -43.01 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.81 Total: 3.80 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.41 Total: 1.32 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.09 Total: -60.75 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.87 -9.14 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974967433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.751 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds