Wall clock time and date at job start Wed Apr 1 2020 04:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40295 * 126.09237 * 2 1 4 4 C 1.31071 * 108.26793 * 179.90718 * 3 2 1 5 5 C 1.39298 * 108.08111 * 359.97438 * 4 3 2 6 6 C 1.34323 * 126.08820 * 179.97438 * 2 1 3 7 7 C 1.50825 * 128.03734 * 0.23346 * 6 2 1 8 8 C 1.53365 * 108.38296 * 163.36342 * 7 6 2 9 9 H 1.09002 * 109.45879 * 289.93198 * 8 7 6 10 10 C 1.50706 * 109.46291 * 169.95044 * 8 7 6 11 11 O 1.21282 * 119.99874 * 359.96630 * 10 8 7 12 12 N 1.34775 * 119.99872 * 179.97438 * 10 8 7 13 13 C 1.46495 * 120.00072 * 179.97438 * 12 10 8 14 14 H 1.09001 * 110.64185 * 328.14215 * 13 12 10 15 15 C 1.54322 * 110.71884 * 91.47822 * 13 12 10 16 16 N 1.47027 * 107.27274 * 96.17142 * 15 13 12 17 17 C 1.36934 * 125.65276 * 178.89601 * 16 15 13 18 18 H 1.07999 * 120.00161 * 174.88764 * 17 16 15 19 19 C 1.38813 * 119.99920 * 354.87564 * 17 16 15 20 20 N 1.31620 * 119.99679 * 7.06914 * 19 17 16 21 21 Si 1.86790 * 120.00177 * 187.06401 * 19 17 16 22 22 H 1.48504 * 109.47329 * 94.99247 * 21 19 17 23 23 H 1.48497 * 109.47483 * 214.98914 * 21 19 17 24 24 H 1.48506 * 109.47263 * 334.99274 * 21 19 17 25 25 C 1.47435 * 108.69930 * 358.94297 * 16 15 13 26 26 C 1.54902 * 104.83218 * 24.12431 * 25 16 15 27 27 C 1.53007 * 111.00590 * 204.91671 * 26 25 16 28 28 C 1.53009 * 111.00376 * 81.06765 * 26 25 16 29 29 C 1.53109 * 109.50705 * 49.94147 * 8 7 6 30 30 C 1.50837 * 127.89961 * 180.09120 * 5 4 3 31 31 H 1.09001 * 109.47252 * 89.97747 * 1 2 3 32 32 H 1.08994 * 109.47649 * 209.98091 * 1 2 3 33 33 H 1.09002 * 109.47161 * 329.98301 * 1 2 3 34 34 H 1.08000 * 125.96105 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.67894 * 43.64011 * 7 6 2 36 36 H 1.09005 * 109.68123 * 283.08583 * 7 6 2 37 37 H 0.96998 * 119.99837 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.88759 * 215.58668 * 15 13 12 39 39 H 1.08996 * 109.88631 * 336.59981 * 15 13 12 40 40 H 0.97003 * 119.99827 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.35892 * 265.28878 * 25 16 15 42 42 H 1.08993 * 110.36548 * 142.97147 * 25 16 15 43 43 H 1.08996 * 109.47017 * 172.19912 * 27 26 25 44 44 H 1.08995 * 109.46749 * 292.20245 * 27 26 25 45 45 H 1.08997 * 109.46678 * 52.19881 * 27 26 25 46 46 H 1.08998 * 109.46781 * 307.80511 * 28 26 25 47 47 H 1.09000 * 109.46841 * 67.80118 * 28 26 25 48 48 H 1.08992 * 109.46949 * 187.79834 * 28 26 25 49 49 H 1.08994 * 109.46233 * 49.72904 * 29 8 7 50 50 H 1.08999 * 109.46699 * 169.71443 * 29 8 7 51 51 H 1.08998 * 109.68335 * 43.73324 * 30 5 4 52 52 H 1.08991 * 109.71866 * 283.18939 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5392 0.7325 0.0020 5 6 3.5455 -0.6605 0.0039 6 6 2.2562 -1.0855 0.0005 7 6 1.8436 -2.5362 -0.0037 8 6 3.0540 -3.3820 -0.4181 9 1 3.2704 -3.2139 -1.4731 10 6 2.7475 -4.8406 -0.1944 11 8 1.6698 -5.1722 0.2522 12 7 3.6712 -5.7763 -0.4906 13 6 3.3736 -7.1941 -0.2727 14 1 2.7047 -7.3198 0.5787 15 6 2.7701 -7.8269 -1.5443 16 7 3.8699 -8.4753 -2.2734 17 6 3.7491 -9.1707 -3.4468 18 1 4.6310 -9.5409 -3.9484 19 6 2.4930 -9.4000 -3.9915 20 7 1.4313 -8.8332 -3.4587 21 14 2.3097 -10.5127 -5.4805 22 1 1.9763 -11.8887 -5.0323 23 1 1.2223 -9.9989 -6.3516 24 1 3.5847 -10.5353 -6.2416 25 6 5.1244 -8.2537 -1.5312 26 6 4.6808 -8.0043 -0.0681 27 6 5.7244 -7.1797 0.6884 28 6 4.4006 -9.3245 0.6527 29 6 4.2695 -2.9814 0.4223 30 6 4.7398 -1.5817 0.0085 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8898 0.5141 34 1 4.4106 1.3705 0.0022 35 1 1.0311 -2.6847 -0.7150 36 1 1.5164 -2.8277 0.9944 37 1 4.5333 -5.5109 -0.8473 38 1 2.0199 -8.5683 -1.2692 39 1 2.3167 -7.0534 -2.1640 40 1 0.5536 -8.9931 -3.8395 41 1 5.6478 -7.3815 -1.9229 42 1 5.7607 -9.1367 -1.5895 43 1 5.3290 -6.9016 1.6653 44 1 6.6305 -7.7714 0.8181 45 1 5.9568 -6.2789 0.1206 46 1 3.7083 -9.9222 0.0599 47 1 5.3339 -9.8724 0.7831 48 1 3.9603 -9.1194 1.6284 49 1 3.9954 -2.9749 1.4772 50 1 5.0749 -3.6978 0.2607 51 1 5.4815 -1.2178 0.7195 52 1 5.1767 -1.6223 -0.9892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974967433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:45 Heat of formation + Delta-G solvation = 34.307629 kcal Electronic energy + Delta-G solvation = -31700.914359 eV Core-core repulsion = 27701.273931 eV Total energy + Delta-G solvation = -3999.640427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.53860 -41.27078 -39.61615 -37.09044 -35.66856 -34.58715 -34.42805 -32.58451 -31.22087 -30.92988 -29.52712 -28.01919 -27.48657 -27.37914 -25.66678 -24.47658 -23.38820 -22.13826 -21.84113 -21.17277 -20.09878 -19.61718 -18.65690 -18.32338 -17.30869 -17.27450 -16.70992 -16.50716 -15.98271 -15.60579 -15.50223 -15.40016 -15.05015 -14.91592 -14.73052 -14.42856 -14.30895 -13.95163 -13.83872 -13.74045 -13.62813 -13.39365 -13.25594 -13.11043 -12.93393 -12.80504 -12.77216 -12.70320 -12.58711 -12.51589 -12.08693 -11.84761 -11.82765 -11.75092 -11.64716 -11.48787 -11.44384 -11.26090 -10.78406 -10.63594 -10.22779 -9.90749 -9.13438 -8.85988 -7.83413 -5.17905 0.88442 1.44630 1.46398 1.55098 1.57902 1.70830 1.87036 2.26034 2.50156 3.34928 3.45573 3.54977 3.59521 3.75122 3.77021 3.84992 4.00964 4.02460 4.13086 4.21248 4.32724 4.35242 4.40881 4.45074 4.48139 4.57134 4.59082 4.63547 4.69405 4.76487 4.89454 4.93541 4.94758 4.97553 5.00435 5.09203 5.10711 5.18384 5.21081 5.21343 5.35133 5.37626 5.41623 5.43766 5.49314 5.61733 5.75406 5.79470 5.79885 6.09082 6.19896 6.65614 6.75539 7.10342 7.35034 7.80468 8.44803 9.26116 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.002837 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.268777 B = 9868.650009 C =10983.411149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.378 5.378 3 N -0.336 5.336 4 C 0.051 3.949 5 C -0.250 4.250 6 C 0.077 3.923 7 C -0.030 4.030 8 C -0.089 4.089 9 H 0.108 0.892 10 C 0.516 3.484 11 O -0.587 6.587 12 N -0.696 5.696 13 C 0.139 3.861 14 H 0.077 0.923 15 C 0.191 3.809 16 N -0.620 5.620 17 C -0.234 4.234 18 H 0.086 0.914 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.973 3.027 22 H -0.290 1.290 23 H -0.300 1.300 24 H -0.264 1.264 25 C 0.137 3.863 26 C -0.074 4.074 27 C -0.123 4.123 28 C -0.125 4.125 29 C -0.103 4.103 30 C -0.031 4.031 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.210 0.790 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.410 0.590 38 H 0.004 0.996 39 H -0.002 1.002 40 H 0.242 0.758 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.027 0.973 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.097 0.903 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.708 15.674 11.407 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.159 5.159 3 N -0.158 5.158 4 C -0.133 4.133 5 C -0.261 4.261 6 C -0.052 4.052 7 C -0.069 4.069 8 C -0.111 4.111 9 H 0.126 0.874 10 C 0.304 3.696 11 O -0.467 6.467 12 N -0.347 5.347 13 C 0.032 3.968 14 H 0.095 0.905 15 C 0.065 3.935 16 N -0.346 5.346 17 C -0.363 4.363 18 H 0.104 0.896 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.802 3.198 22 H -0.217 1.217 23 H -0.227 1.227 24 H -0.188 1.188 25 C 0.012 3.988 26 C -0.076 4.076 27 C -0.181 4.181 28 C -0.182 4.182 29 C -0.141 4.141 30 C -0.069 4.069 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.227 0.773 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.248 0.752 38 H 0.022 0.978 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.113 0.887 51 H 0.115 0.885 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.857 16.402 11.570 21.555 hybrid contribution -0.513 -1.338 -1.440 2.031 sum 7.344 15.064 10.131 19.583 Atomic orbital electron populations 1.22098 0.73075 1.05513 1.04313 1.48458 1.07460 1.03231 1.56791 1.77445 1.02639 1.08540 1.27191 1.24074 0.95465 0.94962 0.98821 1.20292 0.94579 0.94288 1.16925 1.21026 0.91851 0.90428 1.01933 1.19946 0.97523 0.86156 1.03268 1.21245 0.97607 0.88684 1.03554 0.87424 1.21001 0.83437 0.88818 0.76359 1.90679 1.25248 1.83522 1.47233 1.45802 1.18475 1.05442 1.64999 1.22034 0.97358 0.80419 0.96955 0.90503 1.21100 0.89359 0.93248 0.89790 1.44679 1.03864 1.62133 1.23919 1.19453 0.92768 1.25897 0.98218 0.89613 1.25646 0.95501 1.02279 1.02697 1.70240 0.98073 1.47649 1.44047 0.85128 0.77404 0.78386 0.78871 1.21710 1.22741 1.18833 1.21918 0.88312 0.98548 0.89978 1.21979 0.94167 0.95922 0.95488 1.21650 0.97375 0.99393 0.99634 1.21599 1.01963 0.95473 0.99196 1.21613 0.95223 0.98095 0.99144 1.20025 0.93303 0.90594 1.02975 0.90001 0.88396 0.88280 0.77323 0.90758 0.89466 0.75197 0.97770 0.98357 0.94841 0.94813 0.93533 0.91648 0.90580 0.91341 0.95355 0.90428 0.91709 0.91280 0.88683 0.88485 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 11.32 127.77 1.45 2.94 16 2 N -0.38 -8.79 4.00 -356.02 -1.42 -10.22 16 3 N -0.34 -8.33 12.59 -57.27 -0.72 -9.05 16 4 C 0.05 1.01 12.00 85.06 1.02 2.03 16 5 C -0.25 -4.95 5.91 -20.14 -0.12 -5.07 16 6 C 0.08 1.75 6.73 41.64 0.28 2.03 16 7 C -0.03 -0.70 4.56 30.01 0.14 -0.56 16 8 C -0.09 -1.99 2.50 -11.38 -0.03 -2.02 16 9 H 0.11 2.33 8.11 -2.39 -0.02 2.31 16 10 C 0.52 15.99 7.15 87.66 0.63 16.62 16 11 O -0.59 -23.56 15.47 -3.04 -0.05 -23.61 16 12 N -0.70 -20.63 4.27 -436.93 -1.87 -22.50 16 13 C 0.14 5.06 2.59 46.18 0.12 5.18 16 14 H 0.08 3.02 7.45 -2.39 -0.02 3.01 16 15 C 0.19 9.62 4.80 86.73 0.42 10.03 16 16 N -0.62 -30.61 3.38 -691.99 -2.34 -32.95 16 17 C -0.23 -12.89 10.27 84.03 0.86 -12.03 16 18 H 0.09 4.46 7.84 -2.91 -0.02 4.44 16 19 C -0.07 -3.93 5.48 84.86 0.46 -3.47 16 20 N -0.95 -59.01 10.36 21.65 0.22 -58.78 16 21 Si 0.97 46.28 29.56 68.60 2.03 48.30 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 25 C 0.14 4.98 6.12 86.85 0.53 5.51 16 26 C -0.07 -2.19 0.83 -50.79 -0.04 -2.23 16 27 C -0.12 -2.38 8.22 71.98 0.59 -1.79 16 28 C -0.12 -3.69 8.57 71.99 0.62 -3.07 16 29 C -0.10 -1.60 5.17 30.75 0.16 -1.44 16 30 C -0.03 -0.42 6.28 30.01 0.19 -0.23 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.39 7.90 -2.39 -0.02 1.37 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.17 7.79 -2.38 -0.02 2.15 16 37 H 0.41 9.69 6.44 -92.71 -0.60 9.09 16 38 H 0.00 0.24 7.30 -2.39 -0.02 0.23 16 39 H 0.00 -0.10 7.51 -2.39 -0.02 -0.12 16 40 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.03 1.13 7.98 -2.39 -0.02 1.11 16 42 H 0.05 1.66 8.05 -2.39 -0.02 1.64 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.11 6.48 -2.39 -0.02 1.10 16 46 H 0.03 1.05 7.91 -2.39 -0.02 1.03 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.07 1.14 8.11 -2.39 -0.02 1.12 16 50 H 0.09 1.11 7.30 -2.39 -0.02 1.09 16 51 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -79.15 405.28 3.44 -75.71 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.31 Total: 20.66 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 7.27 Total: 12.43 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -6.13 Total: -133.50 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -79.15 3.44 -75.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974967433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.016 kcal (2) G-P(sol) polarization free energy of solvation -79.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds