Wall clock time and date at job start Wed Apr 1 2020 04:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40291 * 126.09202 * 2 1 4 4 C 1.31229 * 108.25754 * 180.02562 * 3 2 1 5 5 C 1.39297 * 108.06755 * 359.91500 * 4 3 2 6 6 C 1.34329 * 126.08951 * 180.02562 * 2 1 3 7 7 C 1.50824 * 128.03332 * 0.10803 * 6 2 1 8 8 C 1.53363 * 108.40987 * 163.40828 * 7 6 2 9 9 H 1.09001 * 109.46370 * 289.93451 * 8 7 6 10 10 C 1.50694 * 109.46516 * 169.94759 * 8 7 6 11 11 O 1.21283 * 120.00419 * 359.97438 * 10 8 7 12 12 N 1.34779 * 120.00368 * 180.02562 * 10 8 7 13 13 C 1.46495 * 120.00430 * 179.97438 * 12 10 8 14 14 H 1.08993 * 110.64108 * 31.86024 * 13 12 10 15 15 C 1.54324 * 110.72268 * 268.52239 * 13 12 10 16 16 N 1.47025 * 107.27316 * 263.83037 * 15 13 12 17 17 C 1.36930 * 125.64935 * 181.00918 * 16 15 13 18 18 H 1.08006 * 119.99848 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00141 * 0.05685 * 17 16 15 20 20 N 1.31614 * 119.99687 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47254 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47007 * 119.99638 * 21 19 17 24 24 H 1.48497 * 109.47132 * 239.99911 * 21 19 17 25 25 C 1.47433 * 108.69965 * 1.05812 * 16 15 13 26 26 C 1.54908 * 104.83232 * 335.87264 * 25 16 15 27 27 C 1.53000 * 111.00194 * 278.93740 * 26 25 16 28 28 C 1.52999 * 111.03765 * 155.10349 * 26 25 16 29 29 C 1.53111 * 109.50801 * 49.93473 * 8 7 6 30 30 C 1.50840 * 127.90220 * 180.17113 * 5 4 3 31 31 H 1.09006 * 109.47454 * 270.00103 * 1 2 3 32 32 H 1.09003 * 109.47304 * 29.99893 * 1 2 3 33 33 H 1.08998 * 109.47587 * 150.00234 * 1 2 3 34 34 H 1.08002 * 125.97457 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.68538 * 43.66552 * 7 6 2 36 36 H 1.08999 * 109.68174 * 283.14737 * 7 6 2 37 37 H 0.97006 * 119.99585 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.87969 * 23.24127 * 15 13 12 39 39 H 1.08992 * 109.88288 * 144.41189 * 15 13 12 40 40 H 0.97006 * 119.99427 * 180.02562 * 20 19 17 41 41 H 1.08998 * 110.36378 * 217.03364 * 25 16 15 42 42 H 1.08998 * 110.46055 * 94.75837 * 25 16 15 43 43 H 1.09008 * 109.47107 * 172.19675 * 27 26 25 44 44 H 1.09000 * 109.46976 * 292.19589 * 27 26 25 45 45 H 1.08996 * 109.47492 * 52.19657 * 27 26 25 46 46 H 1.09010 * 109.46643 * 307.78337 * 28 26 25 47 47 H 1.08997 * 109.47536 * 67.77731 * 28 26 25 48 48 H 1.09000 * 109.47051 * 187.78651 * 28 26 25 49 49 H 1.08996 * 109.46130 * 49.74513 * 29 8 7 50 50 H 1.09003 * 109.46164 * 169.72192 * 29 8 7 51 51 H 1.09000 * 109.67809 * 43.68081 * 30 5 4 52 52 H 1.08999 * 109.67983 * 283.12241 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5406 0.7317 -0.0006 5 6 3.5463 -0.6612 0.0010 6 6 2.2562 -1.0855 -0.0005 7 6 1.8436 -2.5362 -0.0034 8 6 3.0531 -3.3829 -0.4184 9 1 3.2686 -3.2157 -1.4737 10 6 2.7463 -4.8410 -0.1933 11 8 1.6689 -5.1720 0.2546 12 7 3.6695 -5.7775 -0.4888 13 6 3.3715 -7.1949 -0.2695 14 1 2.3098 -7.3917 -0.4177 15 6 3.8209 -7.6358 1.1395 16 7 5.1531 -8.2426 1.0029 17 6 5.8938 -8.7795 2.0217 18 1 6.8662 -9.2029 1.8174 19 6 5.3946 -8.7804 3.3170 20 7 4.2096 -8.2646 3.5659 21 14 6.4047 -9.5135 4.7067 22 1 7.6906 -10.0247 4.1678 23 1 6.6754 -8.4686 5.7266 24 1 5.6511 -10.6307 5.3305 25 6 5.5599 -8.1760 -0.4127 26 6 4.2308 -8.0874 -1.2035 27 6 3.6001 -9.4711 -1.3725 28 6 4.4434 -7.4153 -2.5613 29 6 4.2698 -2.9822 0.4203 30 6 4.7403 -1.5830 0.0047 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 4.4123 1.3695 -0.0003 35 1 1.0302 -2.6852 -0.7135 36 1 1.5171 -2.8270 0.9951 37 1 4.5317 -5.5127 -0.8460 38 1 3.8739 -6.7699 1.7995 39 1 3.1196 -8.3676 1.5402 40 1 3.8610 -8.2648 4.4711 41 1 6.1085 -9.0754 -0.6923 42 1 6.1684 -7.2899 -0.5930 43 1 2.6057 -9.3665 -1.8068 44 1 4.2226 -10.0761 -2.0317 45 1 3.5224 -9.9564 -0.3997 46 1 4.9554 -6.4634 -2.4193 47 1 5.0488 -8.0622 -3.1962 48 1 3.4776 -7.2411 -3.0357 49 1 3.9970 -2.9749 1.4756 50 1 5.0747 -3.6991 0.2582 51 1 5.4829 -1.2190 0.7147 52 1 5.1754 -1.6240 -0.9939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974967436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:49 Heat of formation + Delta-G solvation = 55.919695 kcal Electronic energy + Delta-G solvation = -31790.955655 eV Core-core repulsion = 27792.252397 eV Total energy + Delta-G solvation = -3998.703258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64823 -39.91859 -38.19796 -36.06125 -33.90024 -33.75138 -33.00845 -30.70619 -30.35486 -29.88743 -27.98942 -26.82371 -26.70350 -25.63660 -24.36149 -23.08235 -22.44149 -21.04792 -20.40888 -19.79795 -18.88891 -18.54959 -17.25045 -16.70048 -16.35545 -15.81359 -15.66709 -14.93009 -14.65018 -14.45249 -14.26703 -13.95252 -13.88989 -13.70963 -13.52500 -13.43040 -13.20925 -13.03128 -12.81943 -12.52949 -12.51585 -12.07620 -11.98234 -11.88505 -11.69664 -11.63785 -11.36460 -11.07928 -11.00068 -10.90848 -10.79938 -10.79395 -10.59514 -10.37844 -10.23298 -10.01277 -9.86669 -9.64524 -9.41750 -9.32625 -8.63511 -8.42976 -8.28125 -6.82431 -5.69174 -3.03746 1.76109 2.36133 2.70240 2.96468 3.40078 3.45478 3.48251 3.51518 4.36211 4.46389 4.50604 4.60474 4.77221 4.92096 4.95507 4.96252 4.99547 5.18524 5.22475 5.26902 5.29296 5.30041 5.31310 5.49441 5.53752 5.56578 5.63835 5.77205 5.81122 5.82873 5.90137 5.91833 6.01833 6.05413 6.15871 6.19876 6.21243 6.24038 6.26519 6.38906 6.57780 6.58238 6.60905 6.67515 6.75043 6.91184 6.95916 7.56171 7.60442 7.64479 7.82666 7.94323 8.25845 8.60674 9.22376 9.83132 10.48400 11.41360 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.002972 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.096904 B = 9417.663225 C =10444.757331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.307 5.307 4 C 0.054 3.946 5 C -0.243 4.243 6 C 0.091 3.909 7 C -0.036 4.036 8 C -0.097 4.097 9 H 0.098 0.902 10 C 0.518 3.482 11 O -0.543 6.543 12 N -0.706 5.706 13 C 0.123 3.877 14 H 0.088 0.912 15 C 0.176 3.824 16 N -0.602 5.602 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.917 5.917 21 Si 0.909 3.091 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.144 3.856 26 C -0.090 4.090 27 C -0.126 4.126 28 C -0.130 4.130 29 C -0.112 4.112 30 C -0.036 4.036 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.181 0.819 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.396 0.604 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.252 0.748 41 H 0.040 0.960 42 H 0.015 0.985 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.075 0.925 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 12.880 -12.953 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 N -0.128 5.128 4 C -0.131 4.131 5 C -0.254 4.254 6 C -0.037 4.037 7 C -0.075 4.075 8 C -0.119 4.119 9 H 0.116 0.884 10 C 0.303 3.697 11 O -0.421 6.421 12 N -0.357 5.357 13 C 0.018 3.982 14 H 0.106 0.894 15 C 0.050 3.950 16 N -0.329 5.329 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.017 3.983 26 C -0.091 4.091 27 C -0.184 4.184 28 C -0.188 4.188 29 C -0.150 4.150 30 C -0.074 4.074 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.198 0.802 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.231 0.769 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.093 0.907 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.858 13.620 -12.383 19.039 hybrid contribution 1.392 -0.818 0.732 1.773 sum -3.466 12.802 -11.651 17.654 Atomic orbital electron populations 1.21865 0.74406 1.04395 1.03552 1.48160 1.06432 1.03480 1.56854 1.77548 1.01527 1.07524 1.26228 1.23588 0.95156 0.94483 0.99831 1.19943 0.94191 0.93794 1.17507 1.20954 0.91092 0.90632 1.01068 1.20084 0.97444 0.85755 1.04199 1.21256 0.96549 0.91876 1.02201 0.88353 1.20298 0.84391 0.87317 0.77674 1.90694 1.24209 1.82540 1.44645 1.45980 1.17537 1.06830 1.65322 1.22484 0.99115 0.78484 0.98071 0.89381 1.21512 0.86755 0.97425 0.89281 1.44439 1.17077 1.69700 1.01634 1.19057 0.98857 1.31643 0.86122 0.90477 1.24797 0.97041 1.01171 0.97332 1.69974 1.17197 1.49921 1.19391 0.86085 0.79071 0.78362 0.82466 1.20580 1.21833 1.21826 1.21625 0.92850 0.98014 0.85779 1.22014 0.97559 0.95562 0.94010 1.21601 0.99153 0.95080 1.02539 1.21669 1.01086 0.99880 0.96147 1.21622 0.96152 0.96861 1.00391 1.19966 0.93924 0.92039 1.01484 0.90626 0.89375 0.89379 0.80175 0.89890 0.88449 0.76924 0.93365 0.92957 0.93798 0.94176 0.96714 0.93395 0.92930 0.91212 0.93037 0.92726 0.92939 0.90730 0.90443 0.90656 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 11.32 59.85 0.68 1.47 16 2 N -0.37 -4.38 4.00 -63.86 -0.26 -4.64 16 3 N -0.31 -4.02 12.60 30.57 0.39 -3.64 16 4 C 0.05 0.62 12.00 -17.42 -0.21 0.41 16 5 C -0.24 -2.83 5.92 -105.03 -0.62 -3.45 16 6 C 0.09 1.10 6.73 -82.31 -0.55 0.55 16 7 C -0.04 -0.42 4.63 -27.63 -0.13 -0.55 16 8 C -0.10 -1.14 2.50 -91.53 -0.23 -1.37 16 9 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 10 C 0.52 8.07 7.15 -10.99 -0.08 7.99 16 11 O -0.54 -10.55 15.47 5.55 0.09 -10.46 16 12 N -0.71 -10.85 4.27 -52.04 -0.22 -11.07 16 13 C 0.12 2.24 2.59 -66.10 -0.17 2.07 16 14 H 0.09 1.69 7.45 -51.93 -0.39 1.30 16 15 C 0.18 4.17 4.79 -3.06 -0.01 4.16 16 16 N -0.60 -14.54 3.38 -170.07 -0.57 -15.12 16 17 C -0.23 -6.17 10.28 -15.06 -0.15 -6.33 16 18 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -26.88 10.31 55.49 0.57 -26.31 16 21 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C 0.14 2.73 6.12 -2.53 -0.02 2.72 16 26 C -0.09 -1.42 0.83 -152.36 -0.13 -1.55 16 27 C -0.13 -1.96 8.57 37.16 0.32 -1.64 16 28 C -0.13 -1.59 8.22 37.16 0.31 -1.28 16 29 C -0.11 -1.29 5.17 -26.49 -0.14 -1.43 16 30 C -0.04 -0.35 6.28 -27.63 -0.17 -0.53 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.56 7.57 -51.93 -0.39 0.17 16 34 H 0.18 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.08 0.89 7.76 -51.93 -0.40 0.49 16 36 H 0.10 1.30 7.79 -51.93 -0.40 0.90 16 37 H 0.40 5.24 6.45 -40.82 -0.26 4.97 16 38 H 0.05 1.32 7.41 -51.93 -0.38 0.93 16 39 H 0.05 1.42 7.38 -51.93 -0.38 1.04 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 42 H 0.02 0.28 7.98 -51.93 -0.41 -0.14 16 43 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 46 H 0.05 0.57 6.49 -51.92 -0.34 0.24 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 50 H 0.08 0.88 7.30 -51.93 -0.38 0.50 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -33.73 404.59 -9.11 -42.84 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.77 Total: 4.41 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.41 Total: 0.95 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.10 Total: -60.77 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.73 -9.11 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974967436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.762 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds