Wall clock time and date at job start Wed Apr 1 2020 04:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40291 * 126.09202 * 2 1 4 4 C 1.31229 * 108.25754 * 180.02562 * 3 2 1 5 5 C 1.39297 * 108.06755 * 359.91500 * 4 3 2 6 6 C 1.34329 * 126.08951 * 180.02562 * 2 1 3 7 7 C 1.50824 * 128.03332 * 0.10803 * 6 2 1 8 8 C 1.53363 * 108.40987 * 163.40828 * 7 6 2 9 9 H 1.09001 * 109.46370 * 289.93451 * 8 7 6 10 10 C 1.50694 * 109.46516 * 169.94759 * 8 7 6 11 11 O 1.21283 * 120.00419 * 359.97438 * 10 8 7 12 12 N 1.34779 * 120.00368 * 180.02562 * 10 8 7 13 13 C 1.46495 * 120.00430 * 179.97438 * 12 10 8 14 14 H 1.08993 * 110.64108 * 31.86024 * 13 12 10 15 15 C 1.54324 * 110.72268 * 268.52239 * 13 12 10 16 16 N 1.47025 * 107.27316 * 263.83037 * 15 13 12 17 17 C 1.36930 * 125.64935 * 181.00918 * 16 15 13 18 18 H 1.08006 * 119.99848 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00141 * 0.05685 * 17 16 15 20 20 N 1.31614 * 119.99687 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47254 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47007 * 119.99638 * 21 19 17 24 24 H 1.48497 * 109.47132 * 239.99911 * 21 19 17 25 25 C 1.47433 * 108.69965 * 1.05812 * 16 15 13 26 26 C 1.54908 * 104.83232 * 335.87264 * 25 16 15 27 27 C 1.53000 * 111.00194 * 278.93740 * 26 25 16 28 28 C 1.52999 * 111.03765 * 155.10349 * 26 25 16 29 29 C 1.53111 * 109.50801 * 49.93473 * 8 7 6 30 30 C 1.50840 * 127.90220 * 180.17113 * 5 4 3 31 31 H 1.09006 * 109.47454 * 270.00103 * 1 2 3 32 32 H 1.09003 * 109.47304 * 29.99893 * 1 2 3 33 33 H 1.08998 * 109.47587 * 150.00234 * 1 2 3 34 34 H 1.08002 * 125.97457 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.68538 * 43.66552 * 7 6 2 36 36 H 1.08999 * 109.68174 * 283.14737 * 7 6 2 37 37 H 0.97006 * 119.99585 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.87969 * 23.24127 * 15 13 12 39 39 H 1.08992 * 109.88288 * 144.41189 * 15 13 12 40 40 H 0.97006 * 119.99427 * 180.02562 * 20 19 17 41 41 H 1.08998 * 110.36378 * 217.03364 * 25 16 15 42 42 H 1.08998 * 110.46055 * 94.75837 * 25 16 15 43 43 H 1.09008 * 109.47107 * 172.19675 * 27 26 25 44 44 H 1.09000 * 109.46976 * 292.19589 * 27 26 25 45 45 H 1.08996 * 109.47492 * 52.19657 * 27 26 25 46 46 H 1.09010 * 109.46643 * 307.78337 * 28 26 25 47 47 H 1.08997 * 109.47536 * 67.77731 * 28 26 25 48 48 H 1.09000 * 109.47051 * 187.78651 * 28 26 25 49 49 H 1.08996 * 109.46130 * 49.74513 * 29 8 7 50 50 H 1.09003 * 109.46164 * 169.72192 * 29 8 7 51 51 H 1.09000 * 109.67809 * 43.68081 * 30 5 4 52 52 H 1.08999 * 109.67983 * 283.12241 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5406 0.7317 -0.0006 5 6 3.5463 -0.6612 0.0010 6 6 2.2562 -1.0855 -0.0005 7 6 1.8436 -2.5362 -0.0034 8 6 3.0531 -3.3829 -0.4184 9 1 3.2686 -3.2157 -1.4737 10 6 2.7463 -4.8410 -0.1933 11 8 1.6689 -5.1720 0.2546 12 7 3.6695 -5.7775 -0.4888 13 6 3.3715 -7.1949 -0.2695 14 1 2.3098 -7.3917 -0.4177 15 6 3.8209 -7.6358 1.1395 16 7 5.1531 -8.2426 1.0029 17 6 5.8938 -8.7795 2.0217 18 1 6.8662 -9.2029 1.8174 19 6 5.3946 -8.7804 3.3170 20 7 4.2096 -8.2646 3.5659 21 14 6.4047 -9.5135 4.7067 22 1 7.6906 -10.0247 4.1678 23 1 6.6754 -8.4686 5.7266 24 1 5.6511 -10.6307 5.3305 25 6 5.5599 -8.1760 -0.4127 26 6 4.2308 -8.0874 -1.2035 27 6 3.6001 -9.4711 -1.3725 28 6 4.4434 -7.4153 -2.5613 29 6 4.2698 -2.9822 0.4203 30 6 4.7403 -1.5830 0.0047 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 4.4123 1.3695 -0.0003 35 1 1.0302 -2.6852 -0.7135 36 1 1.5171 -2.8270 0.9951 37 1 4.5317 -5.5127 -0.8460 38 1 3.8739 -6.7699 1.7995 39 1 3.1196 -8.3676 1.5402 40 1 3.8610 -8.2648 4.4711 41 1 6.1085 -9.0754 -0.6923 42 1 6.1684 -7.2899 -0.5930 43 1 2.6057 -9.3665 -1.8068 44 1 4.2226 -10.0761 -2.0317 45 1 3.5224 -9.9564 -0.3997 46 1 4.9554 -6.4634 -2.4193 47 1 5.0488 -8.0622 -3.1962 48 1 3.4776 -7.2411 -3.0357 49 1 3.9970 -2.9749 1.4756 50 1 5.0747 -3.6991 0.2582 51 1 5.4829 -1.2190 0.7147 52 1 5.1754 -1.6240 -0.9939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974967436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:48 Heat of formation + Delta-G solvation = 34.586084 kcal Electronic energy + Delta-G solvation = -31791.880749 eV Core-core repulsion = 27792.252397 eV Total energy + Delta-G solvation = -3999.628353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.53243 -41.26641 -39.61717 -37.10602 -35.66297 -34.58787 -34.43036 -32.57118 -31.23618 -30.91912 -29.53938 -28.02130 -27.48901 -27.37061 -25.66676 -24.47810 -23.41029 -22.15775 -21.84466 -21.15411 -20.10970 -19.61406 -18.65351 -18.32640 -17.35776 -17.25879 -16.65050 -16.48503 -16.02891 -15.68546 -15.46162 -15.33012 -15.08057 -14.89228 -14.75442 -14.47822 -14.32351 -13.89836 -13.85644 -13.74688 -13.66478 -13.41039 -13.21481 -13.12177 -12.92930 -12.82987 -12.75062 -12.69070 -12.61254 -12.53119 -12.05078 -11.86603 -11.83039 -11.73489 -11.69021 -11.48267 -11.45938 -11.26738 -10.80152 -10.64189 -10.21881 -9.90950 -9.14261 -8.85198 -7.81120 -5.16838 0.87784 1.45615 1.46088 1.56418 1.58109 1.69311 1.85043 2.27640 2.50914 3.37381 3.45270 3.55018 3.58985 3.74822 3.77390 3.82618 4.00056 4.01816 4.12592 4.21982 4.32956 4.34266 4.37560 4.44746 4.45502 4.54915 4.58228 4.64257 4.67161 4.76170 4.88443 4.93098 4.93808 4.96926 5.00134 5.07890 5.10232 5.15343 5.18640 5.21233 5.31810 5.37161 5.40435 5.40756 5.49640 5.60618 5.76258 5.77574 5.81402 6.09337 6.20762 6.65732 6.74343 7.11593 7.35234 7.81570 8.45405 9.27908 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.002972 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.096904 B = 9417.663225 C =10444.757331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.375 5.375 3 N -0.335 5.335 4 C 0.050 3.950 5 C -0.251 4.251 6 C 0.079 3.921 7 C -0.029 4.029 8 C -0.083 4.083 9 H 0.132 0.868 10 C 0.515 3.485 11 O -0.586 6.586 12 N -0.696 5.696 13 C 0.138 3.862 14 H 0.077 0.923 15 C 0.193 3.807 16 N -0.619 5.619 17 C -0.231 4.231 18 H 0.086 0.914 19 C -0.069 4.069 20 N -0.952 5.952 21 Si 0.973 3.027 22 H -0.261 1.261 23 H -0.296 1.296 24 H -0.297 1.297 25 C 0.138 3.862 26 C -0.075 4.075 27 C -0.125 4.125 28 C -0.123 4.123 29 C -0.109 4.109 30 C -0.027 4.027 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.208 0.792 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.241 0.759 41 H 0.045 0.955 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.028 0.972 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.045 0.955 50 H 0.082 0.918 51 H 0.084 0.916 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 13.729 -16.053 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.157 5.157 3 N -0.157 5.157 4 C -0.133 4.133 5 C -0.262 4.262 6 C -0.051 4.051 7 C -0.069 4.069 8 C -0.105 4.105 9 H 0.150 0.850 10 C 0.303 3.697 11 O -0.467 6.467 12 N -0.347 5.347 13 C 0.031 3.969 14 H 0.095 0.905 15 C 0.067 3.933 16 N -0.345 5.345 17 C -0.360 4.360 18 H 0.104 0.896 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.224 1.224 24 H -0.225 1.225 25 C 0.013 3.987 26 C -0.076 4.076 27 C -0.182 4.182 28 C -0.180 4.180 29 C -0.147 4.147 30 C -0.065 4.065 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.225 0.775 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.047 0.953 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.064 0.936 50 H 0.100 0.900 51 H 0.102 0.898 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.899 14.480 -15.542 21.439 hybrid contribution 0.780 -1.102 1.712 2.181 sum -2.118 13.378 -13.829 19.357 Atomic orbital electron populations 1.22133 0.72826 1.05759 1.04304 1.48459 1.07536 1.03108 1.56548 1.77499 1.02460 1.08490 1.27266 1.24072 0.95523 0.94844 0.98908 1.20247 0.94551 0.94277 1.17167 1.21016 0.91679 0.90570 1.01795 1.19963 0.97832 0.85922 1.03135 1.21224 0.96588 0.88555 1.04130 0.84992 1.21030 0.83579 0.88847 0.76279 1.90681 1.26168 1.83439 1.46367 1.45807 1.18311 1.05561 1.65056 1.22043 0.98848 0.80646 0.95319 0.90526 1.21081 0.86082 0.94221 0.91909 1.44674 1.16945 1.69293 1.03609 1.19486 0.99172 1.30405 0.86980 0.89591 1.25619 0.98172 1.02488 0.99919 1.70238 1.19052 1.51914 1.18951 0.85070 0.78279 0.77055 0.79328 1.18535 1.22390 1.22477 1.21904 0.94738 0.98919 0.83158 1.21979 0.94738 0.95528 0.95376 1.21600 1.00807 0.94915 1.00908 1.21643 1.02470 1.00580 0.93353 1.21593 0.96032 0.98454 0.98662 1.19974 0.93397 0.90059 1.03092 0.90198 0.88201 0.87876 0.77510 0.88833 0.90929 0.75200 0.97983 0.98030 0.94924 0.93619 0.94739 0.91721 0.90452 0.95289 0.91451 0.90595 0.91757 0.93623 0.89965 0.89765 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 11.32 127.77 1.45 2.82 16 2 N -0.37 -8.60 4.00 -355.96 -1.42 -10.03 16 3 N -0.34 -8.40 12.60 -57.19 -0.72 -9.12 16 4 C 0.05 1.06 12.00 85.04 1.02 2.08 16 5 C -0.25 -5.38 5.92 -20.13 -0.12 -5.50 16 6 C 0.08 1.82 6.73 41.65 0.28 2.10 16 7 C -0.03 -0.68 4.63 30.01 0.14 -0.54 16 8 C -0.08 -1.84 2.50 -11.38 -0.03 -1.87 16 9 H 0.13 2.11 8.11 -2.39 -0.02 2.09 16 10 C 0.52 15.93 7.15 87.65 0.63 16.55 16 11 O -0.59 -23.52 15.47 -3.04 -0.05 -23.57 16 12 N -0.70 -20.69 4.27 -436.93 -1.86 -22.55 16 13 C 0.14 5.04 2.59 46.18 0.12 5.15 16 14 H 0.08 3.02 7.45 -2.39 -0.02 3.00 16 15 C 0.19 9.69 4.79 86.73 0.42 10.11 16 16 N -0.62 -30.44 3.38 -691.98 -2.34 -32.78 16 17 C -0.23 -12.68 10.28 84.03 0.86 -11.81 16 18 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 20 N -0.95 -59.05 10.31 21.65 0.22 -58.82 16 21 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 C 0.14 4.99 6.12 86.85 0.53 5.52 16 26 C -0.07 -2.22 0.83 -50.79 -0.04 -2.26 16 27 C -0.12 -3.69 8.57 71.98 0.62 -3.07 16 28 C -0.12 -2.44 8.22 71.98 0.59 -1.85 16 29 C -0.11 -2.38 5.17 30.75 0.16 -2.22 16 30 C -0.03 -0.46 6.28 30.01 0.19 -0.28 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.22 7.57 -2.39 -0.02 1.20 16 34 H 0.21 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.09 1.93 7.76 -2.39 -0.02 1.91 16 36 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 37 H 0.41 9.75 6.45 -92.70 -0.60 9.15 16 38 H 0.00 0.12 7.41 -2.39 -0.02 0.10 16 39 H 0.00 0.09 7.38 -2.39 -0.02 0.07 16 40 H 0.24 14.78 8.31 -92.70 -0.77 14.01 16 41 H 0.05 1.62 8.05 -2.39 -0.02 1.60 16 42 H 0.03 1.15 7.98 -2.39 -0.02 1.13 16 43 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.03 1.07 7.91 -2.39 -0.02 1.06 16 46 H 0.07 1.15 6.49 -2.38 -0.02 1.13 16 47 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.04 1.25 8.11 -2.39 -0.02 1.23 16 50 H 0.08 1.70 7.30 -2.39 -0.02 1.69 16 51 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 52 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -78.95 404.59 3.44 -75.50 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.31 Total: 21.64 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 7.28 Total: 11.42 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -6.13 Total: -133.31 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -78.95 3.44 -75.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974967436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.091 kcal (2) G-P(sol) polarization free energy of solvation -78.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds