Wall clock time and date at job start Wed Apr 1 2020 04:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40295 * 126.09586 * 2 1 4 4 C 1.31072 * 108.27320 * 180.02562 * 3 2 1 5 5 C 1.39301 * 108.07548 * 359.97438 * 4 3 2 6 6 C 1.34326 * 126.09139 * 179.97438 * 2 1 3 7 7 C 1.50831 * 128.02948 * 359.79172 * 6 2 1 8 8 C 1.53366 * 108.37997 * 196.66272 * 7 6 2 9 9 H 1.08998 * 109.46404 * 70.06680 * 8 7 6 10 10 C 1.50705 * 109.46591 * 190.05053 * 8 7 6 11 11 O 1.21278 * 119.99646 * 0.03087 * 10 8 7 12 12 N 1.34777 * 120.00011 * 180.02562 * 10 8 7 13 13 C 1.46497 * 119.99762 * 179.97438 * 12 10 8 14 14 H 1.08997 * 110.64198 * 36.68435 * 13 12 10 15 15 C 1.54320 * 110.71903 * 273.54291 * 13 12 10 16 16 N 1.47018 * 107.27210 * 263.83160 * 15 13 12 17 17 C 1.36945 * 125.64695 * 181.02594 * 16 15 13 18 18 H 1.08000 * 119.99441 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00031 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47177 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46857 * 120.00139 * 21 19 17 24 24 H 1.48492 * 109.47220 * 239.99987 * 21 19 17 25 25 C 1.47421 * 108.70379 * 1.28563 * 16 15 13 26 26 C 1.55129 * 104.72458 * 335.55582 * 25 16 15 27 27 C 1.53005 * 111.18921 * 279.19182 * 26 25 16 28 28 C 1.52998 * 110.94230 * 155.28681 * 26 25 16 29 29 C 1.53106 * 109.50364 * 310.05627 * 8 7 6 30 30 C 1.50836 * 127.89767 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47073 * 89.97609 * 1 2 3 32 32 H 1.08992 * 109.47455 * 209.97880 * 1 2 3 33 33 H 1.09005 * 109.46850 * 329.97704 * 1 2 3 34 34 H 1.07995 * 125.95981 * 180.02562 * 4 3 2 35 35 H 1.08994 * 109.68374 * 76.93905 * 7 6 2 36 36 H 1.09002 * 109.68260 * 316.38034 * 7 6 2 37 37 H 0.96994 * 119.99689 * 359.97438 * 12 10 8 38 38 H 1.09010 * 109.88205 * 144.41448 * 15 13 12 39 39 H 1.09004 * 110.01290 * 23.32502 * 15 13 12 40 40 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 41 41 H 1.08996 * 110.36244 * 94.48455 * 25 16 15 42 42 H 1.08997 * 110.36930 * 216.80538 * 25 16 15 43 43 H 1.09002 * 109.46863 * 172.18652 * 27 26 25 44 44 H 1.09004 * 109.46859 * 292.18345 * 27 26 25 45 45 H 1.08989 * 109.47342 * 52.18391 * 27 26 25 46 46 H 1.08998 * 109.46748 * 307.95944 * 28 26 25 47 47 H 1.09000 * 109.47082 * 67.95410 * 28 26 25 48 48 H 1.08995 * 109.47036 * 187.96047 * 28 26 25 49 49 H 1.09002 * 109.46622 * 190.29168 * 29 8 7 50 50 H 1.09001 * 109.47016 * 310.27622 * 29 8 7 51 51 H 1.09000 * 109.68279 * 76.81191 * 30 5 4 52 52 H 1.08998 * 109.68933 * 316.25677 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1336 0.0000 4 6 3.5393 0.7325 -0.0006 5 6 3.5455 -0.6605 -0.0003 6 6 2.2563 -1.0855 0.0005 7 6 1.8436 -2.5362 0.0055 8 6 3.0536 -3.3818 0.4214 9 1 3.2693 -3.2129 1.4764 10 6 2.7474 -4.8405 0.1987 11 8 1.6700 -5.1724 -0.2485 12 7 3.6708 -5.7760 0.4963 13 6 3.3729 -7.1940 0.2803 14 1 2.7740 -7.3279 -0.6205 15 6 2.6550 -7.7941 1.5075 16 7 3.6799 -8.4415 2.3393 17 6 3.4503 -9.1108 3.5118 18 1 4.2747 -9.5533 4.0513 19 6 2.1581 -9.2204 4.0069 20 7 1.1534 -8.6816 3.3492 21 14 1.8449 -10.1340 5.6059 22 1 3.1315 -10.6432 6.1452 23 1 1.2268 -9.2103 6.5908 24 1 0.9277 -11.2741 5.3531 25 6 4.9963 -8.2454 1.7055 26 6 4.6814 -8.0242 0.2027 27 6 4.4448 -9.3548 -0.5145 28 6 5.7964 -7.2281 -0.4783 29 6 4.2697 -2.9818 -0.4184 30 6 4.7398 -1.5818 -0.0013 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 4.4106 1.3705 -0.0003 35 1 1.5172 -2.8285 -0.9925 36 1 1.0306 -2.6842 0.7163 37 1 4.5326 -5.5103 0.8535 38 1 1.9205 -8.5315 1.1834 39 1 2.1619 -7.0044 2.0744 40 1 0.2504 -8.7585 3.6950 41 1 5.4923 -7.3699 2.1244 42 1 5.6162 -9.1324 1.8362 43 1 4.0917 -9.1636 -1.5279 44 1 5.3780 -9.9167 -0.5549 45 1 3.6964 -9.9321 0.0282 46 1 5.9927 -6.3188 0.0899 47 1 6.7020 -7.8333 -0.5193 48 1 5.4890 -6.9649 -1.4903 49 1 5.0750 -3.6981 -0.2557 50 1 3.9965 -2.9760 -1.4736 51 1 5.1745 -1.6205 0.9975 52 1 5.4828 -1.2191 -0.7117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974967438.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:53 Heat of formation + Delta-G solvation = 56.469482 kcal Electronic energy + Delta-G solvation = -31731.767819 eV Core-core repulsion = 27733.088402 eV Total energy + Delta-G solvation = -3998.679417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.68209 -39.92024 -38.19174 -36.09269 -33.90989 -33.76325 -32.99025 -30.71212 -30.38309 -29.92407 -27.98479 -26.82363 -26.72284 -25.63495 -24.37280 -23.11177 -22.49590 -21.06872 -20.42032 -19.76238 -18.89643 -18.58321 -17.26104 -16.70208 -16.33494 -15.83290 -15.68347 -15.00721 -14.62225 -14.48020 -14.26348 -13.95235 -13.88914 -13.77698 -13.53883 -13.46074 -13.16580 -13.04165 -12.86490 -12.53035 -12.51500 -12.05495 -11.98448 -11.95017 -11.71409 -11.65722 -11.37441 -11.08976 -11.01777 -10.97329 -10.84354 -10.79760 -10.62532 -10.37884 -10.23302 -9.99289 -9.86565 -9.65005 -9.41507 -9.33923 -8.63230 -8.43082 -8.30791 -6.82280 -5.69070 -3.03798 1.75173 2.35434 2.67927 2.99495 3.39690 3.45053 3.47824 3.50837 4.35581 4.44791 4.50288 4.57288 4.74343 4.89460 4.93370 4.96051 4.97167 5.19619 5.20959 5.24731 5.27355 5.29947 5.30525 5.44501 5.51730 5.53922 5.64131 5.73523 5.79518 5.80994 5.81908 5.90989 5.93720 6.02294 6.11695 6.15762 6.19636 6.19814 6.24190 6.38841 6.55772 6.57996 6.60890 6.67484 6.75588 6.89700 6.95934 7.56127 7.59226 7.65198 7.83084 7.95379 8.26157 8.62303 9.22392 9.83174 10.48449 11.41384 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.002923 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.700130 B = 9576.045308 C =10828.453625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.367 5.367 3 N -0.306 5.306 4 C 0.054 3.946 5 C -0.246 4.246 6 C 0.093 3.907 7 C -0.036 4.036 8 C -0.100 4.100 9 H 0.102 0.898 10 C 0.518 3.482 11 O -0.541 6.541 12 N -0.708 5.708 13 C 0.125 3.875 14 H 0.086 0.914 15 C 0.176 3.824 16 N -0.603 5.603 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.917 5.917 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.144 3.856 26 C -0.089 4.089 27 C -0.126 4.126 28 C -0.131 4.131 29 C -0.109 4.109 30 C -0.036 4.036 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.181 0.819 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.395 0.605 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.251 0.749 41 H 0.016 0.984 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.071 0.929 51 H 0.072 0.928 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 14.277 -10.164 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.149 5.149 3 N -0.127 5.127 4 C -0.131 4.131 5 C -0.258 4.258 6 C -0.036 4.036 7 C -0.075 4.075 8 C -0.122 4.122 9 H 0.120 0.880 10 C 0.304 3.696 11 O -0.418 6.418 12 N -0.358 5.358 13 C 0.020 3.980 14 H 0.104 0.896 15 C 0.050 3.950 16 N -0.329 5.329 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.017 3.983 26 C -0.090 4.090 27 C -0.183 4.183 28 C -0.189 4.189 29 C -0.147 4.147 30 C -0.074 4.074 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.198 0.802 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.090 0.910 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.141 14.991 -10.340 18.923 hybrid contribution 0.549 -0.912 1.206 1.609 sum 5.690 14.079 -9.134 17.721 Atomic orbital electron populations 1.21886 0.74298 1.04635 1.03488 1.48180 1.06494 1.03440 1.56737 1.77495 1.01557 1.07629 1.26066 1.23537 0.95178 0.94449 0.99905 1.19896 0.94150 0.93787 1.17947 1.20962 0.91078 0.90687 1.00828 1.20084 0.97696 0.85646 1.04076 1.21284 0.96312 0.91960 1.02622 0.88013 1.20263 0.84353 0.87256 0.77769 1.90700 1.23379 1.82575 1.45188 1.46001 1.17806 1.06757 1.65258 1.22458 0.96071 0.78690 1.00791 0.89617 1.21509 0.89963 0.95995 0.87509 1.44450 1.00619 1.63649 1.24197 1.19064 0.92859 1.26912 0.96855 0.90471 1.24805 0.95688 1.00908 0.98984 1.69977 0.98741 1.48804 1.38964 0.86082 0.77730 0.79047 0.83110 1.20569 1.21865 1.21796 1.21671 0.89703 0.97773 0.89129 1.22038 0.94346 0.95577 0.97086 1.21592 1.01895 0.95772 0.99091 1.21681 0.97895 0.99379 0.99914 1.21622 0.96175 0.96965 0.99949 1.19976 0.93923 0.91953 1.01596 0.90655 0.89207 0.89315 0.80205 0.88633 0.89571 0.76974 0.92960 0.93426 0.93803 0.96691 0.94143 0.93357 0.92908 0.91212 0.93056 0.92654 0.92820 0.90773 0.91057 0.91005 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.32 59.85 0.68 1.50 16 2 N -0.37 -4.39 4.00 -63.88 -0.26 -4.65 16 3 N -0.31 -3.97 12.59 30.54 0.38 -3.58 16 4 C 0.05 0.60 12.00 -17.48 -0.21 0.39 16 5 C -0.25 -2.74 5.91 -105.05 -0.62 -3.36 16 6 C 0.09 1.11 6.73 -82.33 -0.55 0.56 16 7 C -0.04 -0.43 4.63 -27.63 -0.13 -0.56 16 8 C -0.10 -1.19 2.49 -91.53 -0.23 -1.41 16 9 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 10 C 0.52 8.17 7.15 -10.98 -0.08 8.09 16 11 O -0.54 -10.65 15.55 5.56 0.09 -10.56 16 12 N -0.71 -10.91 4.38 -52.03 -0.23 -11.13 16 13 C 0.12 2.27 2.51 -66.10 -0.17 2.11 16 14 H 0.09 1.64 7.60 -51.93 -0.39 1.24 16 15 C 0.18 4.21 4.79 -3.07 -0.01 4.20 16 16 N -0.60 -14.70 3.38 -169.94 -0.57 -15.27 16 17 C -0.23 -6.22 10.28 -15.06 -0.15 -6.38 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -27.06 10.31 55.49 0.57 -26.49 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C 0.14 2.75 6.15 -2.41 -0.01 2.73 16 26 C -0.09 -1.40 0.83 -152.24 -0.13 -1.53 16 27 C -0.13 -1.94 8.59 37.16 0.32 -1.62 16 28 C -0.13 -1.56 8.22 37.16 0.31 -1.26 16 29 C -0.11 -1.03 5.18 -26.44 -0.14 -1.16 16 30 C -0.04 -0.31 6.28 -27.58 -0.17 -0.49 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.65 7.57 -51.93 -0.39 0.26 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.10 1.19 7.79 -51.93 -0.40 0.78 16 36 H 0.09 1.05 7.76 -51.93 -0.40 0.65 16 37 H 0.40 5.19 6.23 -40.82 -0.25 4.94 16 38 H 0.05 1.43 7.38 -51.92 -0.38 1.05 16 39 H 0.05 1.32 7.40 -51.93 -0.38 0.93 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.02 0.28 7.99 -51.93 -0.41 -0.13 16 42 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.29 7.91 -51.94 -0.41 0.88 16 46 H 0.05 0.55 6.38 -51.93 -0.33 0.22 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.60 7.30 -51.93 -0.38 0.23 16 50 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -34.11 404.57 -9.11 -43.22 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.77 Total: 3.84 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.40 Total: 1.50 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.10 Total: -61.13 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.11 -9.11 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974967438.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.688 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds