Wall clock time and date at job start Wed Apr 1 2020 04:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 110.91911 * 2 1 4 4 C 1.55397 * 111.18883 * 235.94224 * 2 1 3 5 5 N 1.47426 * 104.87477 * 204.97732 * 4 2 1 6 6 C 1.36930 * 125.64694 * 204.16861 * 5 4 2 7 7 H 1.07999 * 120.00175 * 359.97438 * 6 5 4 8 8 C 1.38819 * 119.99976 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99810 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99802 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47320 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46916 * 120.00227 * 10 8 6 13 13 H 1.48505 * 109.46656 * 239.99562 * 10 8 6 14 14 C 1.47025 * 108.69990 * 24.13484 * 5 4 2 15 15 C 1.54315 * 107.27375 * 358.93763 * 14 5 4 16 16 H 1.09005 * 110.71868 * 219.27007 * 15 14 5 17 17 N 1.46505 * 110.72053 * 96.17205 * 15 14 5 18 18 C 1.34777 * 119.99724 * 88.84369 * 17 15 14 19 19 O 1.21573 * 120.00277 * 359.97438 * 18 17 15 20 20 C 1.47710 * 119.99649 * 179.72300 * 18 17 15 21 21 N 1.32042 * 126.64836 * 359.96353 * 20 18 17 22 22 N 1.28684 * 110.10626 * 179.80278 * 21 20 18 23 23 H 0.96998 * 124.94733 * 179.83014 * 22 21 20 24 24 C 1.34768 * 110.10084 * 0.06556 * 22 21 20 25 25 C 1.35171 * 107.18628 * 0.36979 * 24 22 21 26 26 C 1.50391 * 126.25194 * 178.84864 * 25 24 22 27 27 C 1.53213 * 109.05363 * 27.91727 * 26 25 24 28 28 C 1.52658 * 109.64896 * 271.33698 * 27 26 25 29 29 C 1.52615 * 110.81018 * 61.54381 * 28 27 26 30 30 C 1.50683 * 127.33202 * 180.94769 * 24 22 21 31 31 H 1.09004 * 109.47315 * 296.09474 * 1 2 3 32 32 H 1.08999 * 109.47381 * 56.09775 * 1 2 3 33 33 H 1.09007 * 109.47197 * 176.09885 * 1 2 3 34 34 H 1.08990 * 109.47437 * 183.90626 * 3 2 1 35 35 H 1.08996 * 109.46946 * 303.90582 * 3 2 1 36 36 H 1.08997 * 109.46869 * 63.90060 * 3 2 1 37 37 H 1.09003 * 110.33795 * 86.12668 * 4 2 1 38 38 H 1.09000 * 110.43763 * 323.88361 * 4 2 1 39 39 H 0.96998 * 120.00009 * 180.02562 * 9 8 6 40 40 H 1.09005 * 109.87656 * 239.51935 * 14 5 4 41 41 H 1.09000 * 109.88041 * 118.35788 * 14 5 4 42 42 H 0.97000 * 119.99792 * 268.83937 * 17 15 14 43 43 H 1.09000 * 109.53939 * 147.79122 * 26 25 24 44 44 H 1.09001 * 109.53955 * 268.04166 * 26 25 24 45 45 H 1.08998 * 109.44436 * 151.28761 * 27 26 25 46 46 H 1.09005 * 109.41315 * 31.37047 * 27 26 25 47 47 H 1.08998 * 109.21293 * 301.19630 * 28 27 26 48 48 H 1.09005 * 109.17521 * 181.85762 * 28 27 26 49 49 H 1.09000 * 109.40827 * 273.50880 * 29 28 27 50 50 H 1.09004 * 109.41057 * 153.73231 * 29 28 27 51 51 H 1.09004 * 109.52933 * 346.41322 * 30 24 22 52 52 H 1.09006 * 109.53153 * 106.54992 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0916 -0.8114 -1.2004 5 7 3.4327 -1.2461 -0.7690 6 6 4.4723 -1.5692 -1.5995 7 1 4.3445 -1.5161 -2.6706 8 6 5.6906 -1.9652 -1.0646 9 7 5.8465 -2.0295 0.2407 10 14 7.1087 -2.4068 -2.1976 11 1 6.6791 -2.2543 -3.6109 12 1 8.2567 -1.5041 -1.9285 13 1 7.5173 -3.8135 -1.9538 14 6 3.4691 -1.2742 0.7005 15 6 2.0862 -0.8080 1.2021 16 1 2.1893 -0.1707 2.0804 17 7 1.2268 -1.9575 1.4961 18 6 1.2428 -2.5144 2.7234 19 8 1.9706 -2.0631 3.5863 20 6 0.3719 -3.6695 3.0216 21 7 -0.4684 -4.2583 2.1905 22 7 -1.0629 -5.2352 2.7807 23 1 -1.7256 -5.8121 2.3699 24 6 -0.6342 -5.3365 4.0544 25 6 0.2723 -4.3531 4.2502 26 6 1.0030 -4.0595 5.5314 27 6 1.1352 -5.3542 6.3399 28 6 -0.0882 -5.5265 7.2367 29 6 -1.3612 -5.6358 6.4020 30 6 -1.0579 -6.3529 5.0830 31 1 -0.3634 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 3.1636 1.4025 -0.0700 35 1 1.6705 1.9732 -0.8529 36 1 1.7836 1.9299 0.9229 37 1 2.1642 -0.1784 -2.0848 38 1 1.4599 -1.6760 -1.4043 39 1 6.6979 -2.3058 0.6144 40 1 4.2428 -0.5985 1.0651 41 1 3.6664 -2.2886 1.0470 42 1 0.6464 -2.3178 0.8075 43 1 1.9949 -3.6687 5.3040 44 1 0.4439 -3.3239 6.1097 45 1 2.0329 -5.3070 6.9562 46 1 1.2073 -6.2014 5.6579 47 1 -0.1686 -4.6674 7.9026 48 1 0.0291 -6.4320 7.8321 49 1 -1.7433 -4.6369 6.1917 50 1 -2.1109 -6.1998 6.9570 51 1 -1.9518 -6.8714 4.7362 52 1 -0.2546 -7.0739 5.2353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977626184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:09 Heat of formation + Delta-G solvation = 49.211262 kcal Electronic energy + Delta-G solvation = -31876.869218 eV Core-core repulsion = 27877.875061 eV Total energy + Delta-G solvation = -3998.994157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.82952 -39.48195 -37.71387 -37.65084 -33.78381 -33.01933 -32.84287 -31.12822 -30.64638 -30.43650 -28.00082 -26.75753 -25.62819 -25.55272 -24.56601 -24.22739 -22.76246 -20.27085 -19.96523 -19.79233 -19.49224 -18.58562 -17.77318 -16.75509 -16.53897 -16.10498 -15.60731 -15.16856 -14.80477 -14.63924 -14.12943 -13.96411 -13.81084 -13.62331 -13.44301 -13.34374 -13.31757 -13.14824 -12.45090 -12.40830 -11.97806 -11.90032 -11.88059 -11.59492 -11.46095 -11.32079 -11.29749 -10.99394 -10.93321 -10.90323 -10.74010 -10.62313 -10.38774 -10.29706 -10.16181 -9.91034 -9.78763 -9.57403 -9.51345 -9.26121 -8.63340 -8.56316 -8.29930 -6.74405 -5.61740 -2.96166 1.72163 2.14028 2.80764 3.44623 3.49560 3.52544 3.63190 3.81792 4.38289 4.47663 4.56163 4.61443 4.70452 4.91378 4.98337 5.02754 5.12130 5.21329 5.27866 5.36282 5.39867 5.44814 5.61023 5.61494 5.69320 5.73023 5.77600 5.88656 5.89582 5.92270 6.00918 6.02998 6.07919 6.12050 6.23772 6.27852 6.29307 6.32641 6.34638 6.46534 6.60709 6.66120 6.70518 6.75629 6.85802 6.96251 7.05988 7.63378 7.72757 7.82507 7.92663 8.14230 8.33642 8.72707 9.29603 9.90363 10.56449 11.48859 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.003065 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.660962 B = 9132.440181 C =10152.499773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.227 4.227 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.909 3.091 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.176 3.824 15 C 0.124 3.876 16 H 0.089 0.911 17 N -0.696 5.696 18 C 0.600 3.400 19 O -0.531 6.531 20 C 0.001 3.999 21 N -0.261 5.261 22 N -0.382 5.382 23 H 0.442 0.558 24 C 0.007 3.993 25 C -0.137 4.137 26 C -0.046 4.046 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.113 4.113 30 C -0.048 4.048 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.016 0.984 39 H 0.251 0.749 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.401 0.599 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.519 -6.235 11.029 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.050 3.950 15 C 0.019 3.981 16 H 0.107 0.893 17 N -0.346 5.346 18 C 0.383 3.617 19 O -0.406 6.406 20 C -0.160 4.160 21 N -0.097 5.097 22 N -0.095 5.095 23 H 0.286 0.714 24 C -0.119 4.119 25 C -0.147 4.147 26 C -0.084 4.084 27 C -0.162 4.162 28 C -0.158 4.158 29 C -0.151 4.151 30 C -0.086 4.086 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.033 0.967 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.237 0.763 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.105 -5.872 10.562 21.767 hybrid contribution 0.405 -0.964 -0.548 1.181 sum -17.700 -6.836 10.014 21.454 Atomic orbital electron populations 1.21668 0.94733 1.01227 1.01229 1.22084 0.94416 0.95967 0.96615 1.21591 1.02501 0.93719 1.00481 1.21714 0.87785 0.94519 0.94254 1.44435 1.07585 1.78992 1.01876 1.19059 0.89270 1.38310 0.88931 0.90498 1.24807 0.97811 1.01906 0.95929 1.69977 1.24075 1.53411 1.08973 0.86081 0.82636 0.77701 0.79549 1.20619 1.21807 1.21910 1.21525 0.89596 1.00506 0.83326 1.22514 0.92339 0.86117 0.97101 0.89308 1.45868 1.43730 1.32779 1.12242 1.16801 0.81088 0.81023 0.82779 1.90766 1.40806 1.62218 1.46770 1.21907 1.00958 1.00634 0.92470 1.73717 1.09980 1.01488 1.24488 1.43113 1.32963 1.24666 1.08729 0.71430 1.21081 1.01328 1.01956 0.87520 1.19883 1.00977 0.97235 0.96571 1.20001 1.00972 0.96862 0.90558 1.21715 0.97730 0.98354 0.98382 1.21523 0.94446 1.01855 0.97929 1.21513 0.98047 1.01071 0.94507 1.20219 1.01490 0.94892 0.92040 0.92893 0.92725 0.92934 0.91174 0.92934 0.93330 0.94162 0.96675 0.93807 0.92771 0.93372 0.76348 0.89065 0.90930 0.91484 0.91431 0.91704 0.92157 0.91412 0.91394 0.91099 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.23 37.15 0.31 -1.54 16 2 C -0.09 -1.56 0.84 -152.10 -0.13 -1.68 16 3 C -0.13 -2.07 8.58 37.16 0.32 -1.75 16 4 C 0.14 2.97 6.16 -2.26 -0.01 2.95 16 5 N -0.60 -15.48 3.38 -169.76 -0.57 -16.06 16 6 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.85 10.31 55.49 0.57 -27.28 16 10 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 C 0.18 4.46 4.80 -3.07 -0.01 4.45 16 15 C 0.12 2.49 2.54 -66.10 -0.17 2.32 16 16 H 0.09 1.82 7.53 -51.93 -0.39 1.43 16 17 N -0.70 -12.98 4.51 -53.01 -0.24 -13.22 16 18 C 0.60 11.61 7.82 -12.39 -0.10 11.51 16 19 O -0.53 -11.58 14.93 5.30 0.08 -11.50 16 20 C 0.00 0.02 7.13 -82.88 -0.59 -0.57 16 21 N -0.26 -3.81 11.95 33.35 0.40 -3.41 16 22 N -0.38 -4.10 6.83 33.42 0.23 -3.87 16 23 H 0.44 2.97 8.96 -190.31 -1.71 1.26 16 24 C 0.01 0.08 6.37 -82.40 -0.53 -0.45 16 25 C -0.14 -1.93 5.68 -104.84 -0.60 -2.52 16 26 C -0.05 -0.60 5.29 -27.92 -0.15 -0.74 16 27 C -0.12 -1.22 5.54 -26.80 -0.15 -1.37 16 28 C -0.12 -0.89 5.65 -27.10 -0.15 -1.05 16 29 C -0.11 -0.79 5.63 -26.84 -0.15 -0.94 16 30 C -0.05 -0.34 5.55 -27.80 -0.15 -0.50 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 34 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.81 8.06 -51.93 -0.42 0.40 16 38 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 39 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.05 1.53 7.38 -51.93 -0.38 1.15 16 41 H 0.05 1.41 7.41 -51.93 -0.38 1.03 16 42 H 0.40 6.98 6.75 -40.82 -0.28 6.70 16 43 H 0.09 1.44 6.89 -51.93 -0.36 1.08 16 44 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.67 5.66 -51.93 -0.29 0.38 16 47 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 50 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.09 0.63 6.35 -51.93 -0.33 0.30 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -34.04 396.71 -10.95 -45.00 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -9.86 Total: 5.49 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -2.51 Total: 1.23 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: 0.39 Total: -63.83 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.04 -10.95 -45.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977626184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.209 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds