Wall clock time and date at job start Wed Apr 1 2020 04:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 110.91911 * 2 1 4 4 C 1.55397 * 111.18883 * 235.94224 * 2 1 3 5 5 N 1.47426 * 104.87477 * 204.97732 * 4 2 1 6 6 C 1.36930 * 125.64694 * 204.16861 * 5 4 2 7 7 H 1.07999 * 120.00175 * 359.97438 * 6 5 4 8 8 C 1.38819 * 119.99976 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99810 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99802 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47320 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46916 * 120.00227 * 10 8 6 13 13 H 1.48505 * 109.46656 * 239.99562 * 10 8 6 14 14 C 1.47025 * 108.69990 * 24.13484 * 5 4 2 15 15 C 1.54315 * 107.27375 * 358.93763 * 14 5 4 16 16 H 1.09005 * 110.71868 * 219.27007 * 15 14 5 17 17 N 1.46505 * 110.72053 * 96.17205 * 15 14 5 18 18 C 1.34777 * 119.99724 * 88.84369 * 17 15 14 19 19 O 1.21573 * 120.00277 * 359.97438 * 18 17 15 20 20 C 1.47710 * 119.99649 * 179.72300 * 18 17 15 21 21 N 1.32042 * 126.64836 * 359.96353 * 20 18 17 22 22 N 1.28684 * 110.10626 * 179.80278 * 21 20 18 23 23 H 0.96998 * 124.94733 * 179.83014 * 22 21 20 24 24 C 1.34768 * 110.10084 * 0.06556 * 22 21 20 25 25 C 1.35171 * 107.18628 * 0.36979 * 24 22 21 26 26 C 1.50391 * 126.25194 * 178.84864 * 25 24 22 27 27 C 1.53213 * 109.05363 * 27.91727 * 26 25 24 28 28 C 1.52658 * 109.64896 * 271.33698 * 27 26 25 29 29 C 1.52615 * 110.81018 * 61.54381 * 28 27 26 30 30 C 1.50683 * 127.33202 * 180.94769 * 24 22 21 31 31 H 1.09004 * 109.47315 * 296.09474 * 1 2 3 32 32 H 1.08999 * 109.47381 * 56.09775 * 1 2 3 33 33 H 1.09007 * 109.47197 * 176.09885 * 1 2 3 34 34 H 1.08990 * 109.47437 * 183.90626 * 3 2 1 35 35 H 1.08996 * 109.46946 * 303.90582 * 3 2 1 36 36 H 1.08997 * 109.46869 * 63.90060 * 3 2 1 37 37 H 1.09003 * 110.33795 * 86.12668 * 4 2 1 38 38 H 1.09000 * 110.43763 * 323.88361 * 4 2 1 39 39 H 0.96998 * 120.00009 * 180.02562 * 9 8 6 40 40 H 1.09005 * 109.87656 * 239.51935 * 14 5 4 41 41 H 1.09000 * 109.88041 * 118.35788 * 14 5 4 42 42 H 0.97000 * 119.99792 * 268.83937 * 17 15 14 43 43 H 1.09000 * 109.53939 * 147.79122 * 26 25 24 44 44 H 1.09001 * 109.53955 * 268.04166 * 26 25 24 45 45 H 1.08998 * 109.44436 * 151.28761 * 27 26 25 46 46 H 1.09005 * 109.41315 * 31.37047 * 27 26 25 47 47 H 1.08998 * 109.21293 * 301.19630 * 28 27 26 48 48 H 1.09005 * 109.17521 * 181.85762 * 28 27 26 49 49 H 1.09000 * 109.40827 * 273.50880 * 29 28 27 50 50 H 1.09004 * 109.41057 * 153.73231 * 29 28 27 51 51 H 1.09004 * 109.52933 * 346.41322 * 30 24 22 52 52 H 1.09006 * 109.53153 * 106.54992 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0916 -0.8114 -1.2004 5 7 3.4327 -1.2461 -0.7690 6 6 4.4723 -1.5692 -1.5995 7 1 4.3445 -1.5161 -2.6706 8 6 5.6906 -1.9652 -1.0646 9 7 5.8465 -2.0295 0.2407 10 14 7.1087 -2.4068 -2.1976 11 1 6.6791 -2.2543 -3.6109 12 1 8.2567 -1.5041 -1.9285 13 1 7.5173 -3.8135 -1.9538 14 6 3.4691 -1.2742 0.7005 15 6 2.0862 -0.8080 1.2021 16 1 2.1893 -0.1707 2.0804 17 7 1.2268 -1.9575 1.4961 18 6 1.2428 -2.5144 2.7234 19 8 1.9706 -2.0631 3.5863 20 6 0.3719 -3.6695 3.0216 21 7 -0.4684 -4.2583 2.1905 22 7 -1.0629 -5.2352 2.7807 23 1 -1.7256 -5.8121 2.3699 24 6 -0.6342 -5.3365 4.0544 25 6 0.2723 -4.3531 4.2502 26 6 1.0030 -4.0595 5.5314 27 6 1.1352 -5.3542 6.3399 28 6 -0.0882 -5.5265 7.2367 29 6 -1.3612 -5.6358 6.4020 30 6 -1.0579 -6.3529 5.0830 31 1 -0.3634 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 3.1636 1.4025 -0.0700 35 1 1.6705 1.9732 -0.8529 36 1 1.7836 1.9299 0.9229 37 1 2.1642 -0.1784 -2.0848 38 1 1.4599 -1.6760 -1.4043 39 1 6.6979 -2.3058 0.6144 40 1 4.2428 -0.5985 1.0651 41 1 3.6664 -2.2886 1.0470 42 1 0.6464 -2.3178 0.8075 43 1 1.9949 -3.6687 5.3040 44 1 0.4439 -3.3239 6.1097 45 1 2.0329 -5.3070 6.9562 46 1 1.2073 -6.2014 5.6579 47 1 -0.1686 -4.6674 7.9026 48 1 0.0291 -6.4320 7.8321 49 1 -1.7433 -4.6369 6.1917 50 1 -2.1109 -6.1998 6.9570 51 1 -1.9518 -6.8714 4.7362 52 1 -0.2546 -7.0739 5.2353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977626184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:08 Heat of formation + Delta-G solvation = 26.309984 kcal Electronic energy + Delta-G solvation = -31877.862292 eV Core-core repulsion = 27877.875061 eV Total energy + Delta-G solvation = -3999.987231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.86614 -41.09954 -39.29336 -38.45832 -35.70392 -34.53029 -33.89927 -32.61877 -32.00104 -31.44668 -29.75540 -28.08757 -27.43922 -26.43741 -25.82143 -25.32994 -24.36686 -22.13035 -21.20891 -20.78799 -20.46571 -20.08042 -18.75781 -18.64712 -18.02628 -17.25051 -17.09387 -16.64694 -16.03532 -15.73333 -15.60342 -15.46171 -15.42763 -15.19144 -14.75315 -14.36937 -14.26711 -14.08632 -13.94101 -13.79843 -13.45827 -13.24376 -13.15980 -12.96278 -12.84454 -12.71968 -12.64291 -12.59858 -12.32832 -12.08386 -12.06924 -11.86788 -11.76581 -11.62340 -11.53630 -11.39881 -11.31512 -11.26843 -10.95645 -10.74831 -10.39962 -9.95230 -9.61729 -8.89588 -7.83073 -5.20218 0.50523 1.09802 1.42937 1.44779 1.55160 1.86899 2.24262 2.38946 2.48838 3.34262 3.35890 3.48882 3.65260 3.71815 3.89549 3.95560 4.01745 4.06440 4.09060 4.23556 4.27601 4.38040 4.40365 4.51768 4.54495 4.64308 4.71470 4.84745 4.86319 4.88893 4.93839 4.96402 5.02843 5.03783 5.12166 5.12728 5.15039 5.16067 5.27544 5.31281 5.33293 5.36870 5.44170 5.45545 5.49896 5.55658 5.60984 5.70594 5.74208 6.12993 6.17263 6.50768 6.87559 7.07820 7.21894 7.77279 8.42455 9.26343 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.003065 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.660962 B = 9132.440181 C =10152.499773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.122 4.122 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.236 4.236 7 H 0.087 0.913 8 C -0.072 4.072 9 N -0.953 5.953 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.293 1.293 13 H -0.297 1.297 14 C 0.196 3.804 15 C 0.136 3.864 16 H 0.081 0.919 17 N -0.689 5.689 18 C 0.593 3.407 19 O -0.568 6.568 20 C -0.035 4.035 21 N -0.270 5.270 22 N -0.358 5.358 23 H 0.462 0.538 24 C 0.033 3.967 25 C -0.164 4.164 26 C -0.043 4.043 27 C -0.120 4.120 28 C -0.117 4.117 29 C -0.111 4.111 30 C -0.047 4.047 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.025 0.975 39 H 0.243 0.757 40 H 0.010 0.990 41 H -0.004 1.004 42 H 0.409 0.591 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.052 0.948 50 H 0.097 0.903 51 H 0.107 0.893 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.117 -7.658 10.476 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.075 4.075 3 C -0.180 4.180 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.105 0.895 8 C -0.264 4.264 9 N -0.602 5.602 10 Si 0.808 3.192 11 H -0.185 1.185 12 H -0.220 1.220 13 H -0.224 1.224 14 C 0.069 3.931 15 C 0.030 3.970 16 H 0.099 0.901 17 N -0.339 5.339 18 C 0.379 3.621 19 O -0.445 6.445 20 C -0.194 4.194 21 N -0.107 5.107 22 N -0.075 5.075 23 H 0.311 0.689 24 C -0.095 4.095 25 C -0.174 4.174 26 C -0.081 4.081 27 C -0.157 4.157 28 C -0.154 4.154 29 C -0.149 4.149 30 C -0.086 4.086 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.014 0.986 42 H 0.246 0.754 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.071 0.929 50 H 0.115 0.885 51 H 0.125 0.875 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.771 -7.295 9.954 25.026 hybrid contribution 1.479 -0.570 -0.378 1.630 sum -20.291 -7.866 9.576 23.776 Atomic orbital electron populations 1.21626 0.91106 1.02205 1.03071 1.22066 0.97041 0.95447 0.92936 1.21582 1.00122 0.93507 1.02769 1.21958 0.85481 0.95311 0.95916 1.44682 1.09201 1.78924 1.01756 1.19515 0.90065 1.37116 0.89781 0.89486 1.25714 1.00701 1.02677 0.97326 1.70254 1.24065 1.54904 1.11003 0.84991 0.79028 0.76663 0.78552 1.18479 1.22007 1.22404 1.21065 0.91827 0.96502 0.83695 1.22175 0.90171 0.86765 0.97866 0.90068 1.45728 1.43303 1.32449 1.12462 1.17305 0.80918 0.81514 0.82374 1.90734 1.42442 1.63531 1.47818 1.21596 1.02430 1.01049 0.94326 1.73614 1.10040 1.02483 1.24592 1.43227 1.32097 1.23452 1.08695 0.68930 1.21580 0.99098 1.00974 0.87798 1.20126 1.02645 0.98495 0.96143 1.19921 0.98532 0.98598 0.91069 1.21694 0.99334 0.96308 0.98363 1.21508 0.93448 1.02836 0.97603 1.21519 0.98162 1.00744 0.94469 1.20451 1.03342 0.93930 0.90840 0.91763 0.90011 0.92576 0.94898 0.90107 0.91476 0.93024 0.95765 0.94776 0.97191 0.98554 0.75422 0.93250 0.91055 0.91622 0.91299 0.91865 0.90029 0.92911 0.88502 0.87511 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 8.23 71.98 0.59 -2.51 16 2 C -0.07 -2.51 0.84 -50.62 -0.04 -2.55 16 3 C -0.12 -3.92 8.58 71.98 0.62 -3.30 16 4 C 0.14 5.65 6.16 87.03 0.54 6.18 16 5 N -0.62 -33.02 3.38 -691.00 -2.34 -35.36 16 6 C -0.24 -13.66 10.28 84.04 0.86 -12.80 16 7 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 8 C -0.07 -4.29 5.49 84.86 0.47 -3.82 16 9 N -0.95 -61.65 10.31 21.65 0.22 -61.42 16 10 Si 0.98 47.99 29.55 68.60 2.03 50.02 16 11 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 13 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 14 C 0.20 10.68 4.80 86.73 0.42 11.10 16 15 C 0.14 5.72 2.54 46.18 0.12 5.84 16 16 H 0.08 3.55 7.53 -2.38 -0.02 3.53 16 17 N -0.69 -26.78 4.51 -439.90 -1.98 -28.76 16 18 C 0.59 24.50 7.82 86.75 0.68 25.18 16 19 O -0.57 -27.07 14.93 -3.95 -0.06 -27.13 16 20 C -0.04 -1.21 7.13 42.28 0.30 -0.91 16 21 N -0.27 -7.69 11.95 -48.41 -0.58 -8.27 16 22 N -0.36 -6.89 6.83 -48.19 -0.33 -7.22 16 23 H 0.46 4.62 8.96 -219.88 -1.97 2.65 16 24 C 0.03 0.65 6.37 41.40 0.26 0.91 16 25 C -0.16 -4.70 5.68 -20.00 -0.11 -4.81 16 26 C -0.04 -1.19 5.29 29.82 0.16 -1.03 16 27 C -0.12 -2.30 5.54 30.55 0.17 -2.13 16 28 C -0.12 -1.47 5.65 30.35 0.17 -1.30 16 29 C -0.11 -1.15 5.63 30.52 0.17 -0.98 16 30 C -0.05 -0.49 5.55 29.90 0.17 -0.33 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.40 6.44 -2.38 -0.02 1.38 16 34 H 0.03 1.29 7.91 -2.39 -0.02 1.27 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 2.00 8.06 -2.39 -0.02 1.99 16 38 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 39 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.01 0.62 7.38 -2.38 -0.02 0.60 16 41 H 0.00 -0.24 7.41 -2.39 -0.02 -0.26 16 42 H 0.41 14.38 6.75 -92.71 -0.63 13.76 16 43 H 0.05 1.75 6.89 -2.39 -0.02 1.73 16 44 H 0.07 1.90 7.83 -2.39 -0.02 1.88 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 1.29 5.66 -2.38 -0.01 1.28 16 47 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 48 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.05 0.74 7.79 -2.39 -0.02 0.72 16 50 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 51 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 52 H 0.10 0.98 6.35 -2.38 -0.02 0.96 16 Total: -1.00 -82.25 396.71 0.84 -81.41 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -1.65 Total: 23.99 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.53 Total: 12.75 kcal Atomic # 7 Polarization: -136.02 SS G_CDS: -5.01 Total: -141.03 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -82.25 0.84 -81.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977626184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.719 kcal (2) G-P(sol) polarization free energy of solvation -82.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds