Wall clock time and date at job start Wed Apr 1 2020 04:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 110.91554 * 2 1 4 4 C 1.54904 * 111.00577 * 236.09850 * 2 1 3 5 5 N 1.47429 * 104.83316 * 278.93313 * 4 2 1 6 6 C 1.36935 * 125.65165 * 155.90584 * 5 4 2 7 7 H 1.08003 * 119.99807 * 353.90257 * 6 5 4 8 8 C 1.38811 * 120.00378 * 173.90786 * 6 5 4 9 9 N 1.31622 * 119.99485 * 6.82400 * 8 6 5 10 10 Si 1.86800 * 120.00372 * 186.83202 * 8 6 5 11 11 H 1.48499 * 109.47302 * 94.97554 * 10 8 6 12 12 H 1.48492 * 109.46995 * 214.98105 * 10 8 6 13 13 H 1.48504 * 109.46844 * 334.98001 * 10 8 6 14 14 C 1.47023 * 108.70048 * 335.87658 * 5 4 2 15 15 C 1.54317 * 107.27303 * 1.05305 * 14 5 4 16 16 H 1.09002 * 110.87179 * 140.62971 * 15 14 5 17 17 N 1.46497 * 110.72403 * 263.83194 * 15 14 5 18 18 C 1.34771 * 120.00322 * 268.52372 * 17 15 14 19 19 O 1.21568 * 120.00185 * 359.97438 * 18 17 15 20 20 C 1.47711 * 120.00404 * 179.97438 * 18 17 15 21 21 N 1.32052 * 126.64177 * 359.95353 * 20 18 17 22 22 N 1.28686 * 110.11055 * 179.90778 * 21 20 18 23 23 H 0.96992 * 124.94841 * 179.46028 * 22 21 20 24 24 C 1.34738 * 110.10411 * 359.43995 * 22 21 20 25 25 C 1.35238 * 107.18388 * 1.04480 * 24 22 21 26 26 C 1.50365 * 126.22851 * 178.65332 * 25 24 22 27 27 C 1.53219 * 109.10822 * 27.85692 * 26 25 24 28 28 C 1.52653 * 109.56208 * 271.29307 * 27 26 25 29 29 C 1.52602 * 110.81992 * 61.52119 * 28 27 26 30 30 C 1.50688 * 127.41933 * 181.20853 * 24 22 21 31 31 H 1.08994 * 109.47215 * 296.09610 * 1 2 3 32 32 H 1.08995 * 109.47027 * 56.10327 * 1 2 3 33 33 H 1.09002 * 109.47064 * 176.09647 * 1 2 3 34 34 H 1.09000 * 109.47260 * 183.90150 * 3 2 1 35 35 H 1.08999 * 109.47458 * 303.90244 * 3 2 1 36 36 H 1.09007 * 109.47324 * 63.89655 * 3 2 1 37 37 H 1.08998 * 110.37145 * 37.76898 * 4 2 1 38 38 H 1.09000 * 110.36947 * 160.10171 * 4 2 1 39 39 H 0.97001 * 119.99456 * 180.02562 * 9 8 6 40 40 H 1.09008 * 109.88231 * 241.63784 * 14 5 4 41 41 H 1.08995 * 109.88740 * 120.47547 * 14 5 4 42 42 H 0.97001 * 119.99907 * 88.52112 * 17 15 14 43 43 H 1.09005 * 109.53050 * 267.96440 * 26 25 24 44 44 H 1.08997 * 109.53313 * 147.74658 * 26 25 24 45 45 H 1.08999 * 109.45657 * 151.26923 * 27 26 25 46 46 H 1.08992 * 109.45665 * 31.31990 * 27 26 25 47 47 H 1.09007 * 109.20329 * 181.86183 * 28 27 26 48 48 H 1.08997 * 109.21079 * 301.17008 * 28 27 26 49 49 H 1.09003 * 109.41929 * 153.72389 * 29 28 27 50 50 H 1.08998 * 109.41647 * 273.52236 * 29 28 27 51 51 H 1.08999 * 109.52217 * 106.96900 * 30 24 22 52 52 H 1.09007 * 109.51839 * 346.79303 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 2.0140 -2.2159 -0.7733 6 6 1.9462 -3.3000 -1.6071 7 1 1.8425 -3.1562 -2.6724 8 6 2.0105 -4.5838 -1.0831 9 7 2.0012 -4.7636 0.2208 10 14 2.1105 -6.0562 -2.2282 11 1 3.5321 -6.4425 -2.4149 12 1 1.3616 -7.1944 -1.6376 13 1 1.5171 -5.7021 -3.5427 14 6 2.0285 -2.2646 0.6961 15 6 2.0861 -0.8079 1.2023 16 1 1.4540 -0.6767 2.0805 17 7 3.4666 -0.4155 1.4963 18 6 3.9654 -0.5839 2.7369 19 8 3.2696 -1.0611 3.6122 20 6 5.3575 -0.1888 3.0333 21 7 6.2243 0.3378 2.1877 22 7 7.3434 0.5604 2.7825 23 1 8.1316 0.9369 2.3608 24 6 7.2608 0.1948 4.0767 25 6 6.0183 -0.3017 4.2731 26 6 5.4778 -0.8608 5.5600 27 6 6.2001 -0.1978 6.7374 28 6 7.4573 -0.9934 7.0794 29 6 8.4245 -1.0129 5.8992 30 6 8.3318 0.3088 5.1306 31 1 -0.3633 0.4520 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3633 -1.0253 -0.0700 34 1 3.1636 1.4025 -0.0699 35 1 1.6705 1.9732 -0.8529 36 1 1.7835 1.9300 0.9229 37 1 1.4673 -0.6462 -2.0836 38 1 3.1183 -0.5234 -1.4023 39 1 2.0465 -5.6606 0.5870 40 1 2.9064 -2.8116 1.0402 41 1 1.1219 -2.7479 1.0600 42 1 4.0217 -0.0345 0.7980 43 1 5.6460 -1.9374 5.5888 44 1 4.4093 -0.6560 5.6261 45 1 5.5383 -0.1750 7.6032 46 1 6.4777 0.8207 6.4661 47 1 7.9486 -0.5360 7.9382 48 1 7.1770 -2.0164 7.3304 49 1 9.4419 -1.1479 6.2667 50 1 8.1682 -1.8376 5.2342 51 1 8.0797 1.1142 5.8204 52 1 9.2894 0.5216 4.6552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977626195.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:12 Heat of formation + Delta-G solvation = 48.889734 kcal Electronic energy + Delta-G solvation = -31883.928050 eV Core-core repulsion = 27884.919950 eV Total energy + Delta-G solvation = -3999.008100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.83004 -39.49651 -37.71967 -37.67184 -33.77788 -33.02644 -32.85276 -31.12728 -30.65085 -30.43937 -28.00704 -26.76008 -25.62662 -25.56175 -24.56763 -24.22819 -22.76026 -20.26320 -19.96635 -19.80434 -19.50987 -18.58240 -17.77167 -16.75460 -16.55331 -16.12923 -15.55515 -15.21019 -14.81342 -14.61745 -14.15514 -13.95465 -13.80715 -13.62186 -13.45311 -13.40127 -13.25827 -13.14190 -12.45345 -12.41527 -11.97739 -11.90237 -11.87208 -11.60756 -11.46034 -11.32752 -11.29623 -10.99744 -10.92719 -10.91344 -10.73356 -10.62819 -10.38897 -10.30902 -10.16638 -9.93049 -9.80608 -9.56992 -9.53329 -9.26434 -8.63313 -8.54526 -8.29624 -6.74216 -5.63609 -2.96881 1.71952 2.13414 2.80786 3.44662 3.49476 3.51997 3.62698 3.81286 4.38882 4.47889 4.55994 4.62318 4.70695 4.90417 4.97216 5.03704 5.12825 5.21284 5.26649 5.35815 5.40669 5.44673 5.58665 5.62266 5.69843 5.73678 5.78499 5.88726 5.90372 5.94583 6.01294 6.02999 6.07957 6.12030 6.23491 6.26255 6.28917 6.31508 6.34617 6.46341 6.59767 6.65853 6.70679 6.75731 6.85341 6.96156 7.05622 7.61025 7.73983 7.82122 7.91773 8.13763 8.33191 8.71962 9.28759 9.89818 10.56396 11.47483 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.003126 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.165864 B = 8954.364623 C =10026.018579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.915 5.915 10 Si 0.908 3.092 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.175 3.825 15 C 0.124 3.876 16 H 0.091 0.909 17 N -0.695 5.695 18 C 0.600 3.400 19 O -0.532 6.532 20 C 0.001 3.999 21 N -0.261 5.261 22 N -0.381 5.381 23 H 0.442 0.558 24 C 0.007 3.993 25 C -0.137 4.137 26 C -0.047 4.047 27 C -0.123 4.123 28 C -0.121 4.121 29 C -0.115 4.115 30 C -0.047 4.047 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.016 0.984 39 H 0.252 0.748 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.401 0.599 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.090 0.910 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.241 14.983 11.089 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.562 5.562 10 Si 0.739 3.261 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.019 3.981 16 H 0.109 0.891 17 N -0.345 5.345 18 C 0.383 3.617 19 O -0.407 6.407 20 C -0.160 4.160 21 N -0.096 5.096 22 N -0.094 5.094 23 H 0.286 0.714 24 C -0.119 4.119 25 C -0.147 4.147 26 C -0.085 4.085 27 C -0.160 4.160 28 C -0.158 4.158 29 C -0.153 4.153 30 C -0.085 4.085 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.237 0.763 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.108 0.892 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.763 14.703 10.620 21.618 hybrid contribution 0.878 -0.764 -0.579 1.300 sum 12.641 13.939 10.041 21.329 Atomic orbital electron populations 1.21596 0.93320 1.02890 1.00489 1.22012 0.96273 0.94182 0.96644 1.21671 1.00443 0.95535 1.01191 1.21633 0.96595 0.85786 0.94273 1.44429 1.86871 0.99757 1.01811 1.19019 1.43510 0.83853 0.89383 0.90523 1.24820 1.02217 0.97319 0.95907 1.69984 1.56340 1.20554 1.09370 0.86161 0.77492 0.82799 0.79695 1.21794 1.21820 1.20705 1.21534 1.01578 0.88578 0.83382 1.22507 0.80912 0.97524 0.97144 0.89138 1.45846 1.14782 1.63114 1.10780 1.16802 0.83617 0.78310 0.82925 1.90760 1.58847 1.44718 1.46370 1.21899 0.95689 1.06229 0.92170 1.73728 0.92976 1.18217 1.24716 1.43102 1.11846 1.47242 1.07223 0.71419 1.21097 0.97998 1.05907 0.86941 1.19887 0.92696 1.05673 0.96400 1.20001 1.00764 0.99364 0.88329 1.21705 0.96502 0.99614 0.98176 1.21521 0.95914 1.00997 0.97371 1.21528 0.99612 0.96751 0.97446 1.20214 0.94424 0.99730 0.94173 0.93323 0.92941 0.91210 0.92922 0.92763 0.92927 0.94176 0.96639 0.93752 0.93068 0.93140 0.76313 0.90693 0.89256 0.91592 0.91538 0.92200 0.91607 0.91342 0.91251 0.89225 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.57 37.16 0.32 -1.74 16 2 C -0.09 -1.56 0.83 -152.36 -0.13 -1.69 16 3 C -0.13 -1.85 8.22 37.16 0.31 -1.54 16 4 C 0.14 2.96 6.12 -2.53 -0.02 2.95 16 5 N -0.60 -15.45 3.38 -170.07 -0.57 -16.02 16 6 C -0.23 -6.47 10.26 -15.06 -0.15 -6.63 16 7 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 8 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 9 N -0.92 -27.79 10.36 55.49 0.58 -27.22 16 10 Si 0.91 22.63 29.56 -169.99 -5.02 17.61 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.17 4.42 4.80 -3.07 -0.01 4.41 16 15 C 0.12 2.48 2.59 -66.10 -0.17 2.31 16 16 H 0.09 1.85 7.45 -51.93 -0.39 1.47 16 17 N -0.69 -12.97 4.45 -53.02 -0.24 -13.20 16 18 C 0.60 11.58 7.82 -12.39 -0.10 11.48 16 19 O -0.53 -11.53 14.89 5.31 0.08 -11.46 16 20 C 0.00 0.02 7.13 -82.88 -0.59 -0.57 16 21 N -0.26 -3.81 11.95 33.35 0.40 -3.41 16 22 N -0.38 -4.10 6.83 33.42 0.23 -3.88 16 23 H 0.44 2.99 8.96 -190.32 -1.71 1.28 16 24 C 0.01 0.07 6.38 -82.39 -0.53 -0.45 16 25 C -0.14 -1.92 5.68 -104.83 -0.60 -2.52 16 26 C -0.05 -0.60 5.30 -27.93 -0.15 -0.75 16 27 C -0.12 -1.13 5.54 -26.80 -0.15 -1.28 16 28 C -0.12 -0.92 5.64 -27.11 -0.15 -1.07 16 29 C -0.12 -0.86 5.64 -26.84 -0.15 -1.01 16 30 C -0.05 -0.33 5.55 -27.80 -0.15 -0.49 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 34 H 0.05 0.73 6.48 -51.93 -0.34 0.39 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.02 0.33 7.98 -51.93 -0.41 -0.09 16 39 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 40 H 0.05 1.50 7.27 -51.92 -0.38 1.12 16 41 H 0.05 1.42 7.55 -51.93 -0.39 1.03 16 42 H 0.40 7.03 6.85 -40.82 -0.28 6.75 16 43 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 44 H 0.09 1.34 6.88 -51.93 -0.36 0.98 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.59 5.66 -51.93 -0.29 0.30 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 51 H 0.09 0.57 6.34 -51.93 -0.33 0.24 16 52 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -33.97 396.67 -10.96 -44.93 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -9.86 Total: 5.54 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.52 Total: 1.13 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 0.39 Total: -63.73 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.97 -10.96 -44.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977626195.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.821 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds