Wall clock time and date at job start Wed Apr 1 2020 04:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 110.91554 * 2 1 4 4 C 1.54904 * 111.00577 * 236.09850 * 2 1 3 5 5 N 1.47429 * 104.83316 * 278.93313 * 4 2 1 6 6 C 1.36935 * 125.65165 * 155.90584 * 5 4 2 7 7 H 1.08003 * 119.99807 * 353.90257 * 6 5 4 8 8 C 1.38811 * 120.00378 * 173.90786 * 6 5 4 9 9 N 1.31622 * 119.99485 * 6.82400 * 8 6 5 10 10 Si 1.86800 * 120.00372 * 186.83202 * 8 6 5 11 11 H 1.48499 * 109.47302 * 94.97554 * 10 8 6 12 12 H 1.48492 * 109.46995 * 214.98105 * 10 8 6 13 13 H 1.48504 * 109.46844 * 334.98001 * 10 8 6 14 14 C 1.47023 * 108.70048 * 335.87658 * 5 4 2 15 15 C 1.54317 * 107.27303 * 1.05305 * 14 5 4 16 16 H 1.09002 * 110.87179 * 140.62971 * 15 14 5 17 17 N 1.46497 * 110.72403 * 263.83194 * 15 14 5 18 18 C 1.34771 * 120.00322 * 268.52372 * 17 15 14 19 19 O 1.21568 * 120.00185 * 359.97438 * 18 17 15 20 20 C 1.47711 * 120.00404 * 179.97438 * 18 17 15 21 21 N 1.32052 * 126.64177 * 359.95353 * 20 18 17 22 22 N 1.28686 * 110.11055 * 179.90778 * 21 20 18 23 23 H 0.96992 * 124.94841 * 179.46028 * 22 21 20 24 24 C 1.34738 * 110.10411 * 359.43995 * 22 21 20 25 25 C 1.35238 * 107.18388 * 1.04480 * 24 22 21 26 26 C 1.50365 * 126.22851 * 178.65332 * 25 24 22 27 27 C 1.53219 * 109.10822 * 27.85692 * 26 25 24 28 28 C 1.52653 * 109.56208 * 271.29307 * 27 26 25 29 29 C 1.52602 * 110.81992 * 61.52119 * 28 27 26 30 30 C 1.50688 * 127.41933 * 181.20853 * 24 22 21 31 31 H 1.08994 * 109.47215 * 296.09610 * 1 2 3 32 32 H 1.08995 * 109.47027 * 56.10327 * 1 2 3 33 33 H 1.09002 * 109.47064 * 176.09647 * 1 2 3 34 34 H 1.09000 * 109.47260 * 183.90150 * 3 2 1 35 35 H 1.08999 * 109.47458 * 303.90244 * 3 2 1 36 36 H 1.09007 * 109.47324 * 63.89655 * 3 2 1 37 37 H 1.08998 * 110.37145 * 37.76898 * 4 2 1 38 38 H 1.09000 * 110.36947 * 160.10171 * 4 2 1 39 39 H 0.97001 * 119.99456 * 180.02562 * 9 8 6 40 40 H 1.09008 * 109.88231 * 241.63784 * 14 5 4 41 41 H 1.08995 * 109.88740 * 120.47547 * 14 5 4 42 42 H 0.97001 * 119.99907 * 88.52112 * 17 15 14 43 43 H 1.09005 * 109.53050 * 267.96440 * 26 25 24 44 44 H 1.08997 * 109.53313 * 147.74658 * 26 25 24 45 45 H 1.08999 * 109.45657 * 151.26923 * 27 26 25 46 46 H 1.08992 * 109.45665 * 31.31990 * 27 26 25 47 47 H 1.09007 * 109.20329 * 181.86183 * 28 27 26 48 48 H 1.08997 * 109.21079 * 301.17008 * 28 27 26 49 49 H 1.09003 * 109.41929 * 153.72389 * 29 28 27 50 50 H 1.08998 * 109.41647 * 273.52236 * 29 28 27 51 51 H 1.08999 * 109.52217 * 106.96900 * 30 24 22 52 52 H 1.09007 * 109.51839 * 346.79303 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 2.0140 -2.2159 -0.7733 6 6 1.9462 -3.3000 -1.6071 7 1 1.8425 -3.1562 -2.6724 8 6 2.0105 -4.5838 -1.0831 9 7 2.0012 -4.7636 0.2208 10 14 2.1105 -6.0562 -2.2282 11 1 3.5321 -6.4425 -2.4149 12 1 1.3616 -7.1944 -1.6376 13 1 1.5171 -5.7021 -3.5427 14 6 2.0285 -2.2646 0.6961 15 6 2.0861 -0.8079 1.2023 16 1 1.4540 -0.6767 2.0805 17 7 3.4666 -0.4155 1.4963 18 6 3.9654 -0.5839 2.7369 19 8 3.2696 -1.0611 3.6122 20 6 5.3575 -0.1888 3.0333 21 7 6.2243 0.3378 2.1877 22 7 7.3434 0.5604 2.7825 23 1 8.1316 0.9369 2.3608 24 6 7.2608 0.1948 4.0767 25 6 6.0183 -0.3017 4.2731 26 6 5.4778 -0.8608 5.5600 27 6 6.2001 -0.1978 6.7374 28 6 7.4573 -0.9934 7.0794 29 6 8.4245 -1.0129 5.8992 30 6 8.3318 0.3088 5.1306 31 1 -0.3633 0.4520 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3633 -1.0253 -0.0700 34 1 3.1636 1.4025 -0.0699 35 1 1.6705 1.9732 -0.8529 36 1 1.7835 1.9300 0.9229 37 1 1.4673 -0.6462 -2.0836 38 1 3.1183 -0.5234 -1.4023 39 1 2.0465 -5.6606 0.5870 40 1 2.9064 -2.8116 1.0402 41 1 1.1219 -2.7479 1.0600 42 1 4.0217 -0.0345 0.7980 43 1 5.6460 -1.9374 5.5888 44 1 4.4093 -0.6560 5.6261 45 1 5.5383 -0.1750 7.6032 46 1 6.4777 0.8207 6.4661 47 1 7.9486 -0.5360 7.9382 48 1 7.1770 -2.0164 7.3304 49 1 9.4419 -1.1479 6.2667 50 1 8.1682 -1.8376 5.2342 51 1 8.0797 1.1142 5.8204 52 1 9.2894 0.5216 4.6552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977626195.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:11 Heat of formation + Delta-G solvation = 26.096435 kcal Electronic energy + Delta-G solvation = -31884.916442 eV Core-core repulsion = 27884.919950 eV Total energy + Delta-G solvation = -3999.996492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.86563 -41.11170 -39.31258 -38.46347 -35.69683 -34.54439 -33.90236 -32.62185 -31.99947 -31.45022 -29.76013 -28.09019 -27.44424 -26.43812 -25.81803 -25.33295 -24.36447 -22.12804 -21.21903 -20.79636 -20.47139 -20.07848 -18.76146 -18.64800 -18.03110 -17.30575 -17.04843 -16.61040 -16.07035 -15.72512 -15.58554 -15.52057 -15.43268 -15.15807 -14.75600 -14.36691 -14.27439 -14.04298 -13.96694 -13.80935 -13.49142 -13.25556 -13.17583 -12.96260 -12.83344 -12.69626 -12.64209 -12.60050 -12.32538 -12.10668 -12.07475 -11.87046 -11.75681 -11.62985 -11.54866 -11.40065 -11.32811 -11.28186 -10.96009 -10.72479 -10.40265 -9.94955 -9.61471 -8.88944 -7.84893 -5.20717 0.50340 1.09319 1.42509 1.45073 1.54209 1.86977 2.23662 2.38926 2.48510 3.32968 3.35700 3.49669 3.65042 3.72078 3.89305 3.96353 4.01884 4.06102 4.09089 4.24074 4.27154 4.38975 4.39924 4.51630 4.53619 4.64110 4.71344 4.84642 4.86226 4.89078 4.94093 4.95607 5.01877 5.03803 5.12321 5.13274 5.15233 5.16503 5.27068 5.30655 5.32850 5.37239 5.43780 5.45821 5.49047 5.55371 5.61255 5.69271 5.74654 6.12964 6.16943 6.50404 6.87419 7.07227 7.21271 7.76894 8.42553 9.25079 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.003126 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.165864 B = 8954.364623 C =10026.018579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.122 4.122 4 C 0.138 3.862 5 N -0.619 5.619 6 C -0.238 4.238 7 H 0.087 0.913 8 C -0.069 4.069 9 N -0.952 5.952 10 Si 0.977 3.023 11 H -0.291 1.291 12 H -0.297 1.297 13 H -0.262 1.262 14 C 0.194 3.806 15 C 0.136 3.864 16 H 0.083 0.917 17 N -0.688 5.688 18 C 0.594 3.406 19 O -0.568 6.568 20 C -0.035 4.035 21 N -0.271 5.271 22 N -0.358 5.358 23 H 0.462 0.538 24 C 0.033 3.967 25 C -0.164 4.164 26 C -0.045 4.045 27 C -0.115 4.115 28 C -0.119 4.119 29 C -0.115 4.115 30 C -0.045 4.045 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.025 0.975 39 H 0.243 0.757 40 H 0.000 1.000 41 H 0.006 0.994 42 H 0.408 0.592 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.055 0.945 49 H 0.095 0.905 50 H 0.042 0.958 51 H 0.109 0.891 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.816 17.988 10.613 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.180 4.180 4 C 0.014 3.986 5 N -0.345 5.345 6 C -0.367 4.367 7 H 0.105 0.895 8 C -0.262 4.262 9 N -0.601 5.601 10 Si 0.806 3.194 11 H -0.218 1.218 12 H -0.224 1.224 13 H -0.186 1.186 14 C 0.067 3.933 15 C 0.030 3.970 16 H 0.101 0.899 17 N -0.339 5.339 18 C 0.380 3.620 19 O -0.446 6.446 20 C -0.194 4.194 21 N -0.108 5.108 22 N -0.074 5.074 23 H 0.311 0.689 24 C -0.095 4.095 25 C -0.174 4.174 26 C -0.083 4.083 27 C -0.152 4.152 28 C -0.156 4.156 29 C -0.153 4.153 30 C -0.083 4.083 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.024 0.976 42 H 0.245 0.755 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.074 0.926 49 H 0.114 0.886 50 H 0.061 0.939 51 H 0.127 0.873 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.361 17.766 10.088 24.973 hybrid contribution 0.130 -1.687 -0.436 1.747 sum 14.491 16.079 9.653 23.700 Atomic orbital electron populations 1.21586 0.92370 1.01258 1.02761 1.21991 0.96936 0.95624 0.93013 1.21625 1.00616 0.92734 1.03003 1.21876 0.97416 0.83412 0.95934 1.44675 1.86552 1.01614 1.01689 1.19483 1.42132 0.84867 0.90218 0.89495 1.25712 1.02766 1.00377 0.97318 1.70256 1.58067 1.20334 1.11411 0.85070 0.77145 0.78851 0.78375 1.21798 1.22408 1.18639 1.21085 0.97110 0.91306 0.83762 1.22168 0.82089 0.94826 0.97901 0.89883 1.45709 1.14223 1.62929 1.11013 1.17296 0.84807 0.77429 0.82512 1.90728 1.60216 1.46253 1.47361 1.21599 0.94865 1.08974 0.93960 1.73625 0.93861 1.18497 1.24812 1.43215 1.11438 1.45497 1.07293 0.68940 1.21603 0.97570 1.02945 0.87369 1.20135 0.94155 1.07177 0.95940 1.19935 0.99509 0.98732 0.90139 1.21671 0.97119 0.99954 0.96448 1.21521 0.95211 1.00392 0.98509 1.21539 1.00910 0.96016 0.96842 1.20443 0.94483 1.00046 0.93338 0.91482 0.90139 0.94870 0.92602 0.90065 0.91835 0.93028 0.95749 0.94739 0.98143 0.97558 0.75457 0.92479 0.92417 0.91127 0.90428 0.89592 0.92584 0.88636 0.93874 0.87288 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.57 71.98 0.62 -3.29 16 2 C -0.07 -2.54 0.83 -50.79 -0.04 -2.58 16 3 C -0.12 -3.11 8.22 71.98 0.59 -2.52 16 4 C 0.14 5.65 6.12 86.85 0.53 6.18 16 5 N -0.62 -32.94 3.38 -691.99 -2.34 -35.28 16 6 C -0.24 -13.78 10.26 84.03 0.86 -12.92 16 7 H 0.09 4.74 7.84 -2.91 -0.02 4.72 16 8 C -0.07 -4.12 5.48 84.86 0.47 -3.66 16 9 N -0.95 -61.51 10.36 21.65 0.22 -61.28 16 10 Si 0.98 47.91 29.56 68.60 2.03 49.94 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 14 C 0.19 10.56 4.80 86.73 0.42 10.97 16 15 C 0.14 5.71 2.59 46.18 0.12 5.83 16 16 H 0.08 3.62 7.45 -2.39 -0.02 3.60 16 17 N -0.69 -26.78 4.45 -439.93 -1.96 -28.73 16 18 C 0.59 24.43 7.82 86.75 0.68 25.11 16 19 O -0.57 -26.85 14.89 -3.93 -0.06 -26.91 16 20 C -0.04 -1.21 7.13 42.28 0.30 -0.91 16 21 N -0.27 -7.74 11.95 -48.41 -0.58 -8.32 16 22 N -0.36 -6.91 6.83 -48.17 -0.33 -7.24 16 23 H 0.46 4.67 8.96 -219.89 -1.97 2.70 16 24 C 0.03 0.64 6.38 41.42 0.26 0.90 16 25 C -0.16 -4.69 5.68 -20.00 -0.11 -4.80 16 26 C -0.04 -1.23 5.30 29.82 0.16 -1.08 16 27 C -0.11 -2.01 5.54 30.55 0.17 -1.84 16 28 C -0.12 -1.56 5.64 30.35 0.17 -1.39 16 29 C -0.11 -1.39 5.64 30.52 0.17 -1.22 16 30 C -0.04 -0.46 5.55 29.90 0.17 -0.29 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.03 1.29 7.91 -2.39 -0.02 1.27 16 34 H 0.05 1.40 6.48 -2.39 -0.02 1.39 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 38 H 0.02 0.98 7.98 -2.39 -0.02 0.96 16 39 H 0.24 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.00 0.02 7.27 -2.38 -0.02 0.01 16 41 H 0.01 0.39 7.55 -2.39 -0.02 0.37 16 42 H 0.41 14.50 6.85 -92.71 -0.63 13.86 16 43 H 0.06 1.70 7.82 -2.38 -0.02 1.69 16 44 H 0.06 1.91 6.88 -2.39 -0.02 1.90 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.19 5.66 -2.39 -0.01 1.18 16 47 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 49 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.04 0.76 7.79 -2.39 -0.02 0.74 16 51 H 0.11 0.83 6.34 -2.39 -0.02 0.82 16 52 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -82.03 396.67 0.86 -81.17 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -1.66 Total: 24.15 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.53 Total: 12.50 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -4.98 Total: -140.85 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.06 Total: -26.91 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -82.03 0.86 -81.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977626195.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.267 kcal (2) G-P(sol) polarization free energy of solvation -82.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds