Wall clock time and date at job start Wed Apr 1 2020 04:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 C 1.52995 * 109.46911 * 239.99612 * 2 1 3 5 5 C 1.50700 * 109.46624 * 120.00055 * 2 1 3 6 6 N 1.31876 * 118.95565 * 60.00126 * 5 2 1 7 7 C 1.32145 * 120.96690 * 179.97438 * 6 5 2 8 8 C 1.39943 * 118.92540 * 359.97438 * 7 6 5 9 9 C 1.47839 * 120.93854 * 180.02562 * 8 7 6 10 10 O 1.21555 * 119.99667 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99965 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99997 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.64158 * 36.69610 * 12 11 9 14 14 C 1.54322 * 110.72543 * 273.55255 * 12 11 9 15 15 N 1.47019 * 107.27223 * 263.65400 * 14 12 11 16 16 C 1.36932 * 125.65152 * 181.03573 * 15 14 12 17 17 H 1.08002 * 120.00173 * 180.02562 * 16 15 14 18 18 C 1.38818 * 119.99942 * 0.02575 * 16 15 14 19 19 N 1.31615 * 119.99835 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99957 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47161 * 59.99794 * 20 18 16 22 22 H 1.48499 * 109.47029 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47246 * 299.99751 * 20 18 16 24 24 C 1.47426 * 108.70209 * 1.05519 * 15 14 12 25 25 C 1.54910 * 104.83209 * 335.87354 * 24 15 14 26 26 C 1.52999 * 111.00558 * 155.08511 * 25 24 15 27 27 C 1.53003 * 111.00362 * 278.93333 * 25 24 15 28 28 C 1.39951 * 118.12341 * 0.27818 * 8 7 6 29 29 N 1.31871 * 118.95112 * 240.01703 * 5 2 1 30 30 H 1.09004 * 109.46930 * 300.00102 * 1 2 3 31 31 H 1.08999 * 109.46661 * 59.99293 * 1 2 3 32 32 H 1.08991 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46895 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47095 * 300.00050 * 3 2 1 35 35 H 1.09004 * 109.47183 * 60.00053 * 3 2 1 36 36 H 1.08998 * 109.47865 * 300.00493 * 4 2 1 37 37 H 1.09007 * 109.47076 * 60.00709 * 4 2 1 38 38 H 1.09005 * 109.47106 * 179.97438 * 4 2 1 39 39 H 1.07998 * 120.53417 * 179.97438 * 7 6 5 40 40 H 0.97007 * 120.00095 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.88768 * 144.23142 * 14 12 11 42 42 H 1.09003 * 109.87844 * 23.06644 * 14 12 11 43 43 H 0.97002 * 120.00405 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.36718 * 94.71247 * 24 15 14 45 45 H 1.09005 * 110.36600 * 217.03808 * 24 15 14 46 46 H 1.09001 * 109.46968 * 61.44814 * 26 25 24 47 47 H 1.09000 * 109.47530 * 181.45632 * 26 25 24 48 48 H 1.09008 * 109.47168 * 301.45670 * 26 25 24 49 49 H 1.08999 * 109.46945 * 58.54584 * 27 25 24 50 50 H 1.09000 * 109.46803 * 178.54170 * 27 25 24 51 51 H 1.08991 * 109.47274 * 298.54850 * 27 25 24 52 52 H 1.08000 * 120.53661 * 179.69606 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 7 1.7011 -1.9730 1.4186 7 6 2.1197 -2.6344 2.4833 8 6 2.9262 -1.9736 3.4168 9 6 3.4199 -2.6708 4.6233 10 8 3.1265 -3.8347 4.8154 11 7 4.1950 -2.0160 5.5102 12 6 4.6847 -2.7071 6.7056 13 1 4.9253 -3.7455 6.4776 14 6 3.6492 -2.6245 7.8468 15 7 4.0368 -1.4970 8.7071 16 6 3.3855 -1.1002 9.8444 17 1 3.7510 -0.2552 10.4091 18 6 2.2556 -1.7841 10.2717 19 7 1.8100 -2.8136 9.5834 20 14 1.3668 -1.2424 11.8228 21 1 0.8992 0.1579 11.6620 22 1 0.1996 -2.1294 12.0599 23 1 2.2946 -1.3247 12.9793 24 6 5.2424 -0.8640 8.1422 25 6 5.9170 -1.9762 7.3009 26 6 6.7860 -1.3757 6.1940 27 6 6.7356 -2.9154 8.1890 28 6 3.2478 -0.6325 3.1786 29 7 2.7887 -0.0497 2.0850 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.8439 -3.6681 2.6306 40 1 4.4288 -1.0871 5.3571 41 1 3.6573 -3.5500 8.4226 42 1 2.6554 -2.4511 7.4338 43 1 1.0202 -3.2914 9.8817 44 1 4.9668 -0.0223 7.5070 45 1 5.9081 -0.5359 8.9406 46 1 7.5787 -0.7750 6.6401 47 1 7.2270 -2.1780 5.6027 48 1 6.1712 -0.7459 5.5508 49 1 6.0857 -3.3626 8.9410 50 1 7.1771 -3.7015 7.5765 51 1 7.5271 -2.3511 8.6821 52 1 3.8634 -0.0837 3.8758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977660950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:07 Heat of formation + Delta-G solvation = 30.390713 kcal Electronic energy + Delta-G solvation = -31355.218859 eV Core-core repulsion = 27355.408581 eV Total energy + Delta-G solvation = -3999.810278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50878 -39.76413 -38.02225 -36.81710 -34.28724 -33.79962 -33.10785 -31.61713 -30.72386 -28.17487 -27.58036 -27.53498 -26.92686 -25.68289 -25.27323 -24.48117 -23.35031 -21.20808 -20.27056 -19.87818 -19.01668 -17.92975 -17.45347 -16.73806 -16.53060 -15.67850 -15.47755 -14.82970 -14.68535 -14.58971 -14.26731 -14.13060 -13.94080 -13.89243 -13.73283 -13.57484 -13.29637 -12.60836 -12.50108 -12.41923 -12.11399 -12.06333 -12.00751 -11.87459 -11.72218 -11.45619 -11.29158 -11.26185 -11.15967 -11.13461 -11.03075 -11.00607 -10.78116 -10.44742 -10.31988 -10.05658 -9.92776 -9.72303 -9.65986 -9.64069 -9.41317 -8.66916 -8.55405 -6.85283 -5.70690 -3.05741 0.33567 0.88957 2.93882 3.27086 3.39760 3.44128 3.46019 3.52531 3.71551 3.88055 4.32303 4.48604 4.61384 4.66864 4.70103 4.72877 4.84055 4.95432 5.13296 5.21155 5.23557 5.37288 5.38938 5.51045 5.56108 5.57753 5.58074 5.62783 5.67819 5.73271 5.74174 5.85097 5.86220 5.96651 6.02797 6.11291 6.13092 6.15304 6.16907 6.17832 6.33478 6.51772 6.55585 6.61465 6.63399 6.72967 6.88260 7.50211 7.59076 7.71104 7.83058 7.85924 8.23488 8.39743 9.20179 9.80935 10.45819 11.39854 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.002826 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.295777 B = 9907.020620 C =10887.861788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.002 4.002 3 C -0.129 4.129 4 C -0.136 4.136 5 C 0.340 3.660 6 N -0.515 5.515 7 C 0.208 3.792 8 C -0.236 4.236 9 C 0.566 3.434 10 O -0.528 6.528 11 N -0.701 5.701 12 C 0.124 3.876 13 H 0.090 0.910 14 C 0.176 3.824 15 N -0.602 5.602 16 C -0.231 4.231 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.911 3.089 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.143 3.857 25 C -0.089 4.089 26 C -0.132 4.132 27 C -0.125 4.125 28 C 0.183 3.817 29 N -0.514 5.514 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.182 0.818 40 H 0.393 0.607 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.253 0.747 44 H 0.015 0.985 45 H 0.042 0.958 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.048 0.952 51 H 0.054 0.946 52 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 5.173 -19.381 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.004 4.004 3 C -0.187 4.187 4 C -0.194 4.194 5 C 0.073 3.927 6 N -0.228 5.228 7 C 0.041 3.959 8 C -0.244 4.244 9 C 0.350 3.650 10 O -0.405 6.405 11 N -0.352 5.352 12 C 0.020 3.980 13 H 0.108 0.892 14 C 0.050 3.950 15 N -0.329 5.329 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.017 3.983 25 C -0.091 4.091 26 C -0.190 4.190 27 C -0.183 4.183 28 C 0.015 3.985 29 N -0.227 5.227 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.199 0.801 40 H 0.229 0.771 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.088 0.912 50 H 0.067 0.933 51 H 0.073 0.927 52 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.636 4.723 -19.895 20.967 hybrid contribution -0.133 0.299 1.771 1.801 sum 4.504 5.022 -18.124 19.339 Atomic orbital electron populations 1.21855 0.92303 1.03123 1.02215 1.19447 0.96452 0.95176 0.89308 1.21728 1.01778 0.93250 1.01912 1.21845 1.00992 1.01080 0.95444 1.23333 0.88123 0.87145 0.94084 1.68289 1.23487 1.09403 1.21625 1.23510 0.86487 1.00242 0.85696 1.21919 1.05169 0.97442 0.99863 1.17662 0.78950 0.86375 0.82019 1.90803 1.57062 1.16238 1.76417 1.45941 1.51052 1.15152 1.23084 1.22536 0.95047 0.95628 0.84819 0.89213 1.21528 0.93845 0.91890 0.87718 1.44420 1.28181 1.33297 1.26963 1.18964 1.06383 1.11341 0.99267 0.90527 1.24809 0.98432 0.97967 0.99073 1.69940 1.25473 1.21645 1.39456 0.86225 0.79175 0.77614 0.82864 1.21264 1.21630 1.21168 1.21637 0.89184 0.92748 0.94753 1.22018 0.93968 0.97310 0.95757 1.21693 0.99175 1.00339 0.97753 1.21591 0.99178 0.98203 0.99323 1.23475 0.91960 0.90565 0.92455 1.68280 1.11871 1.38938 1.03622 0.92590 0.91465 0.91294 0.91913 0.92296 0.91821 0.91319 0.91486 0.92727 0.80084 0.77066 0.92651 0.93348 0.93612 0.96776 0.93975 0.92418 0.92730 0.93300 0.91187 0.93332 0.92726 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.37 37.16 0.31 -0.88 16 2 C 0.00 -0.02 0.92 -155.66 -0.14 -0.16 16 3 C -0.13 -1.09 7.66 37.16 0.28 -0.81 16 4 C -0.14 -1.09 8.37 37.16 0.31 -0.78 16 5 C 0.34 4.16 6.25 -157.06 -0.98 3.18 16 6 N -0.52 -6.68 9.77 -10.39 -0.10 -6.78 16 7 C 0.21 2.80 10.88 -16.78 -0.18 2.61 16 8 C -0.24 -3.29 5.91 -104.69 -0.62 -3.91 16 9 C 0.57 9.41 7.78 -12.33 -0.10 9.31 16 10 O -0.53 -10.61 16.17 5.32 0.09 -10.53 16 11 N -0.70 -11.05 4.51 -52.98 -0.24 -11.28 16 12 C 0.12 2.25 2.50 -66.10 -0.17 2.09 16 13 H 0.09 1.68 7.60 -51.93 -0.39 1.29 16 14 C 0.18 4.20 4.73 -3.07 -0.01 4.18 16 15 N -0.60 -14.63 3.38 -170.07 -0.58 -15.21 16 16 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -27.10 10.31 55.49 0.57 -26.53 16 20 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.14 2.72 6.14 -2.53 -0.02 2.70 16 25 C -0.09 -1.40 0.84 -152.36 -0.13 -1.52 16 26 C -0.13 -1.58 8.35 37.16 0.31 -1.27 16 27 C -0.13 -1.91 8.61 37.16 0.32 -1.59 16 28 C 0.18 2.24 10.81 -16.77 -0.18 2.05 16 29 N -0.51 -6.44 8.98 -10.39 -0.09 -6.53 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 33 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.07 0.60 8.01 -51.93 -0.42 0.18 16 37 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.18 2.28 7.74 -52.49 -0.41 1.87 16 40 H 0.39 5.22 4.98 -40.82 -0.20 5.02 16 41 H 0.06 1.50 7.38 -51.93 -0.38 1.12 16 42 H 0.05 1.34 7.41 -51.93 -0.38 0.96 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 45 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.53 6.18 -51.92 -0.32 0.21 16 49 H 0.07 1.27 7.81 -51.93 -0.41 0.86 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 52 H 0.17 1.64 6.54 -52.49 -0.34 1.30 16 LS Contribution 411.09 15.07 6.20 6.20 Total: -1.00 -32.30 411.09 -9.11 -41.41 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -8.69 Total: 3.67 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.24 Total: 8.50 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -0.44 Total: -66.33 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.30 -9.11 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977660950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.804 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds