Wall clock time and date at job start Wed Apr 1 2020 04:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 C 1.52995 * 109.46911 * 239.99612 * 2 1 3 5 5 C 1.50700 * 109.46624 * 120.00055 * 2 1 3 6 6 N 1.31876 * 118.95565 * 60.00126 * 5 2 1 7 7 C 1.32145 * 120.96690 * 179.97438 * 6 5 2 8 8 C 1.39943 * 118.92540 * 359.97438 * 7 6 5 9 9 C 1.47839 * 120.93854 * 180.02562 * 8 7 6 10 10 O 1.21555 * 119.99667 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99965 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99997 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.64158 * 36.69610 * 12 11 9 14 14 C 1.54322 * 110.72543 * 273.55255 * 12 11 9 15 15 N 1.47019 * 107.27223 * 263.65400 * 14 12 11 16 16 C 1.36932 * 125.65152 * 181.03573 * 15 14 12 17 17 H 1.08002 * 120.00173 * 180.02562 * 16 15 14 18 18 C 1.38818 * 119.99942 * 0.02575 * 16 15 14 19 19 N 1.31615 * 119.99835 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99957 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47161 * 59.99794 * 20 18 16 22 22 H 1.48499 * 109.47029 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47246 * 299.99751 * 20 18 16 24 24 C 1.47426 * 108.70209 * 1.05519 * 15 14 12 25 25 C 1.54910 * 104.83209 * 335.87354 * 24 15 14 26 26 C 1.52999 * 111.00558 * 155.08511 * 25 24 15 27 27 C 1.53003 * 111.00362 * 278.93333 * 25 24 15 28 28 C 1.39951 * 118.12341 * 0.27818 * 8 7 6 29 29 N 1.31871 * 118.95112 * 240.01703 * 5 2 1 30 30 H 1.09004 * 109.46930 * 300.00102 * 1 2 3 31 31 H 1.08999 * 109.46661 * 59.99293 * 1 2 3 32 32 H 1.08991 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46895 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47095 * 300.00050 * 3 2 1 35 35 H 1.09004 * 109.47183 * 60.00053 * 3 2 1 36 36 H 1.08998 * 109.47865 * 300.00493 * 4 2 1 37 37 H 1.09007 * 109.47076 * 60.00709 * 4 2 1 38 38 H 1.09005 * 109.47106 * 179.97438 * 4 2 1 39 39 H 1.07998 * 120.53417 * 179.97438 * 7 6 5 40 40 H 0.97007 * 120.00095 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.88768 * 144.23142 * 14 12 11 42 42 H 1.09003 * 109.87844 * 23.06644 * 14 12 11 43 43 H 0.97002 * 120.00405 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.36718 * 94.71247 * 24 15 14 45 45 H 1.09005 * 110.36600 * 217.03808 * 24 15 14 46 46 H 1.09001 * 109.46968 * 61.44814 * 26 25 24 47 47 H 1.09000 * 109.47530 * 181.45632 * 26 25 24 48 48 H 1.09008 * 109.47168 * 301.45670 * 26 25 24 49 49 H 1.08999 * 109.46945 * 58.54584 * 27 25 24 50 50 H 1.09000 * 109.46803 * 178.54170 * 27 25 24 51 51 H 1.08991 * 109.47274 * 298.54850 * 27 25 24 52 52 H 1.08000 * 120.53661 * 179.69606 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 7 1.7011 -1.9730 1.4186 7 6 2.1197 -2.6344 2.4833 8 6 2.9262 -1.9736 3.4168 9 6 3.4199 -2.6708 4.6233 10 8 3.1265 -3.8347 4.8154 11 7 4.1950 -2.0160 5.5102 12 6 4.6847 -2.7071 6.7056 13 1 4.9253 -3.7455 6.4776 14 6 3.6492 -2.6245 7.8468 15 7 4.0368 -1.4970 8.7071 16 6 3.3855 -1.1002 9.8444 17 1 3.7510 -0.2552 10.4091 18 6 2.2556 -1.7841 10.2717 19 7 1.8100 -2.8136 9.5834 20 14 1.3668 -1.2424 11.8228 21 1 0.8992 0.1579 11.6620 22 1 0.1996 -2.1294 12.0599 23 1 2.2946 -1.3247 12.9793 24 6 5.2424 -0.8640 8.1422 25 6 5.9170 -1.9762 7.3009 26 6 6.7860 -1.3757 6.1940 27 6 6.7356 -2.9154 8.1890 28 6 3.2478 -0.6325 3.1786 29 7 2.7887 -0.0497 2.0850 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.8439 -3.6681 2.6306 40 1 4.4288 -1.0871 5.3571 41 1 3.6573 -3.5500 8.4226 42 1 2.6554 -2.4511 7.4338 43 1 1.0202 -3.2914 9.8817 44 1 4.9668 -0.0223 7.5070 45 1 5.9081 -0.5359 8.9406 46 1 7.5787 -0.7750 6.6401 47 1 7.2270 -2.1780 5.6027 48 1 6.1712 -0.7459 5.5508 49 1 6.0857 -3.3626 8.9410 50 1 7.1771 -3.7015 7.5765 51 1 7.5271 -2.3511 8.6821 52 1 3.8634 -0.0837 3.8758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977660950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:06 Heat of formation + Delta-G solvation = 10.399283 kcal Electronic energy + Delta-G solvation = -31356.085753 eV Core-core repulsion = 27355.408581 eV Total energy + Delta-G solvation = -4000.677171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.54055 -41.16011 -39.45915 -37.65117 -35.81032 -35.13434 -34.49502 -32.70700 -32.59315 -29.79070 -28.26812 -28.18833 -28.09871 -27.43498 -26.41455 -25.52640 -24.90142 -22.65889 -21.77009 -20.92616 -20.37741 -19.08324 -18.74468 -18.54505 -17.47419 -17.12721 -16.76421 -16.44429 -15.90684 -15.77042 -15.56413 -15.45476 -15.32553 -14.90982 -14.77018 -14.58833 -14.57301 -14.00405 -13.77199 -13.46179 -13.22495 -13.15467 -13.11715 -12.99007 -12.86297 -12.82449 -12.65772 -12.57772 -12.55599 -12.19624 -12.14309 -12.04750 -11.93854 -11.86538 -11.84925 -11.74106 -11.52940 -11.32290 -11.08779 -10.73002 -10.71257 -10.41916 -10.07243 -8.88581 -7.83528 -5.19649 -0.72179 -0.12682 1.43460 1.46460 1.52913 1.68570 1.97791 2.48861 2.62174 2.64957 2.91557 3.30262 3.34770 3.47968 3.54674 3.72545 3.80224 3.83008 3.95767 3.99121 3.99973 4.06854 4.34228 4.39205 4.51180 4.56926 4.68693 4.78023 4.79896 4.84948 4.88847 4.89199 4.95517 4.96757 5.00186 5.02851 5.03586 5.12387 5.14213 5.17980 5.26679 5.31915 5.36370 5.36563 5.46291 5.50440 5.56459 5.68191 5.73064 5.74266 6.17933 6.40838 6.84758 7.06203 7.10764 7.78565 8.42260 9.25319 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.002826 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.295777 B = 9907.020620 C =10887.861788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.006 4.006 3 C -0.124 4.124 4 C -0.131 4.131 5 C 0.336 3.664 6 N -0.522 5.522 7 C 0.204 3.796 8 C -0.249 4.249 9 C 0.567 3.433 10 O -0.571 6.571 11 N -0.690 5.690 12 C 0.138 3.862 13 H 0.082 0.918 14 C 0.193 3.807 15 N -0.620 5.620 16 C -0.235 4.235 17 H 0.087 0.913 18 C -0.070 4.070 19 N -0.953 5.953 20 Si 0.975 3.025 21 H -0.277 1.277 22 H -0.301 1.301 23 H -0.275 1.275 24 C 0.136 3.864 25 C -0.073 4.073 26 C -0.126 4.126 27 C -0.124 4.124 28 C 0.193 3.807 29 N -0.518 5.518 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.182 0.818 40 H 0.408 0.592 41 H 0.007 0.993 42 H 0.000 1.000 43 H 0.243 0.757 44 H 0.033 0.967 45 H 0.049 0.951 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.029 0.971 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 7.871 -21.198 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.008 4.008 3 C -0.181 4.181 4 C -0.189 4.189 5 C 0.070 3.930 6 N -0.235 5.235 7 C 0.037 3.963 8 C -0.257 4.257 9 C 0.354 3.646 10 O -0.451 6.451 11 N -0.342 5.342 12 C 0.033 3.967 13 H 0.100 0.900 14 C 0.066 3.934 15 N -0.346 5.346 16 C -0.364 4.364 17 H 0.105 0.895 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.804 3.196 21 H -0.203 1.203 22 H -0.227 1.227 23 H -0.201 1.201 24 C 0.011 3.989 25 C -0.074 4.074 26 C -0.184 4.184 27 C -0.181 4.181 28 C 0.025 3.975 29 N -0.231 5.231 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.199 0.801 40 H 0.247 0.753 41 H 0.025 0.975 42 H 0.018 0.982 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.048 0.952 50 H 0.088 0.912 51 H 0.095 0.905 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 6.588 7.486 -21.735 23.913 hybrid contribution -0.728 -0.500 2.298 2.461 sum 5.860 6.986 -19.437 21.470 Atomic orbital electron populations 1.21847 0.91704 1.02691 1.02939 1.19680 0.96883 0.95695 0.88561 1.21698 1.01474 0.92435 1.02534 1.21824 1.00764 1.00667 0.95621 1.24065 0.87210 0.86986 0.94748 1.68377 1.23802 1.09941 1.21382 1.23610 0.86298 1.00525 0.85884 1.21648 1.06675 0.98302 0.99083 1.18043 0.78097 0.85926 0.82580 1.90782 1.58502 1.18262 1.77519 1.45723 1.50757 1.15759 1.21925 1.22134 0.94509 0.96333 0.83764 0.89956 1.21090 0.93483 0.89928 0.88867 1.44664 1.29785 1.33620 1.26539 1.19419 1.06109 1.10917 0.99984 0.89543 1.25651 0.99822 0.98469 1.02284 1.70214 1.25631 1.23181 1.41158 0.85196 0.77641 0.77147 0.79632 1.20272 1.22738 1.20053 1.21929 0.87441 0.93954 0.95534 1.21986 0.93240 0.95851 0.96371 1.21684 0.99117 1.01104 0.96449 1.21592 0.98894 0.98916 0.98738 1.23868 0.91264 0.89737 0.92589 1.68415 1.12226 1.38720 1.03743 0.93697 0.88903 0.92312 0.92309 0.89944 0.92935 0.92281 0.89036 0.93032 0.80086 0.75275 0.97466 0.98195 0.94828 0.94940 0.93249 0.90187 0.91364 0.91855 0.95194 0.91208 0.90520 0.78663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.37 71.98 0.60 -1.49 16 2 C -0.01 -0.10 0.92 -52.93 -0.05 -0.15 16 3 C -0.12 -1.79 7.66 71.98 0.55 -1.24 16 4 C -0.13 -1.82 8.37 71.98 0.60 -1.22 16 5 C 0.34 7.82 6.25 138.70 0.87 8.69 16 6 N -0.52 -13.36 9.77 -186.80 -1.82 -15.18 16 7 C 0.20 5.56 10.88 85.06 0.93 6.49 16 8 C -0.25 -6.88 5.91 -19.91 -0.12 -7.00 16 9 C 0.57 19.17 7.78 86.79 0.68 19.85 16 10 O -0.57 -24.06 16.17 -3.89 -0.06 -24.13 16 11 N -0.69 -21.36 4.51 -439.80 -1.98 -23.34 16 12 C 0.14 5.07 2.50 46.18 0.12 5.19 16 13 H 0.08 3.18 7.60 -2.39 -0.02 3.16 16 14 C 0.19 9.72 4.73 86.73 0.41 10.13 16 15 N -0.62 -30.70 3.38 -691.98 -2.34 -33.04 16 16 C -0.24 -12.98 10.28 84.04 0.86 -12.12 16 17 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 18 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 19 N -0.95 -59.51 10.31 21.65 0.22 -59.29 16 20 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 C 0.14 4.94 6.14 86.86 0.53 5.48 16 25 C -0.07 -2.15 0.84 -50.79 -0.04 -2.20 16 26 C -0.13 -2.47 8.35 71.98 0.60 -1.87 16 27 C -0.12 -3.58 8.61 71.98 0.62 -2.96 16 28 C 0.19 4.40 10.81 85.06 0.92 5.32 16 29 N -0.52 -12.11 8.98 -186.79 -1.68 -13.79 16 30 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.04 8.00 -2.39 -0.02 1.02 16 33 H 0.06 0.90 8.04 -2.39 -0.02 0.88 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.88 8.04 -2.38 -0.02 0.86 16 36 H 0.06 0.95 8.01 -2.39 -0.02 0.93 16 37 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.18 4.80 7.74 -2.91 -0.02 4.78 16 40 H 0.41 9.94 4.98 -92.70 -0.46 9.48 16 41 H 0.01 0.42 7.38 -2.39 -0.02 0.41 16 42 H 0.00 -0.01 7.41 -2.39 -0.02 -0.03 16 43 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 44 H 0.03 1.10 8.04 -2.39 -0.02 1.08 16 45 H 0.05 1.74 8.05 -2.38 -0.02 1.72 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.07 6.18 -2.38 -0.01 1.06 16 49 H 0.03 1.09 7.81 -2.39 -0.02 1.07 16 50 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.20 3.22 6.54 -2.91 -0.02 3.21 16 Total: -1.00 -75.56 411.09 3.36 -72.20 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.45 Total: 20.64 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 8.54 Total: 27.35 kcal Atomic # 7 Polarization: -137.04 SS G_CDS: -7.60 Total: -144.64 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.06 Total: -24.13 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.56 3.36 -72.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977660950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.600 kcal (2) G-P(sol) polarization free energy of solvation -75.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds