Wall clock time and date at job start Wed Apr 1 2020 03:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.90276 * 2 1 4 4 N 1.40085 * 108.20858 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.03109 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92516 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.12786 * 180.02562 * 6 4 3 8 8 C 1.35319 * 107.74770 * 359.97438 * 6 4 3 9 9 C 1.50697 * 126.04107 * 179.97438 * 8 6 4 10 10 C 1.50701 * 109.46836 * 90.00443 * 9 8 6 11 11 O 1.21276 * 120.00183 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99516 * 179.97438 * 10 9 8 13 13 C 1.46508 * 119.99913 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.62553 * 34.60816 * 13 12 10 15 15 C 1.53296 * 109.62935 * 274.01511 * 13 12 10 16 16 C 1.53040 * 107.47879 * 175.34443 * 15 13 12 17 17 C 1.50884 * 110.96363 * 60.64486 * 16 15 13 18 18 H 1.08998 * 109.04236 * 184.96484 * 17 16 15 19 19 C 1.53379 * 113.07929 * 64.61490 * 17 16 15 20 20 N 1.47430 * 106.51547 * 212.47277 * 19 17 16 21 21 C 1.36936 * 125.72108 * 179.29809 * 20 19 17 22 22 H 1.08007 * 119.99692 * 180.02562 * 21 20 19 23 23 C 1.38808 * 120.00414 * 0.02562 * 21 20 19 24 24 N 1.31619 * 120.00222 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99999 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47133 * 60.00293 * 25 23 21 27 27 H 1.48501 * 109.47386 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47463 * 300.00361 * 25 23 21 29 29 C 1.49587 * 108.79448 * 359.41905 * 20 19 17 30 30 C 1.54065 * 113.56578 * 306.66093 * 17 16 15 31 31 H 1.09009 * 112.60279 * 281.75174 * 30 17 16 32 32 C 1.52624 * 109.62986 * 155.00137 * 13 12 10 33 33 H 1.08994 * 109.47140 * 90.02832 * 1 2 3 34 34 H 1.09000 * 109.46925 * 210.02877 * 1 2 3 35 35 H 1.08998 * 109.46805 * 330.02021 * 1 2 3 36 36 H 1.08992 * 109.47366 * 90.01666 * 7 6 4 37 37 H 1.09002 * 109.47397 * 210.02582 * 7 6 4 38 38 H 1.09004 * 109.46963 * 330.01599 * 7 6 4 39 39 H 1.08999 * 109.47396 * 210.00344 * 9 8 6 40 40 H 1.09000 * 109.46941 * 330.00652 * 9 8 6 41 41 H 0.97006 * 120.00573 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.71629 * 296.18361 * 15 13 12 43 43 H 1.09005 * 109.71412 * 56.82236 * 15 13 12 44 44 H 1.08998 * 110.35083 * 299.63887 * 16 15 13 45 45 H 1.09006 * 108.32517 * 180.32953 * 16 15 13 46 46 H 1.09002 * 110.04754 * 331.74040 * 19 17 16 47 47 H 1.08999 * 110.04844 * 93.15749 * 19 17 16 48 48 H 0.96997 * 120.00076 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.49891 * 266.36850 * 29 20 19 50 50 H 1.08999 * 111.26137 * 143.24560 * 29 20 19 51 51 H 1.08994 * 109.18751 * 302.28302 * 32 13 12 52 52 H 1.08993 * 109.18537 * 61.54653 * 32 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3908 1.2079 -0.0004 6 6 3.6142 -0.7154 -0.0015 7 6 4.8350 -1.5990 -0.0019 8 6 2.3271 -1.1331 -0.0009 9 6 1.8599 -2.5658 -0.0022 10 6 1.7052 -3.0449 1.4183 11 8 1.9498 -2.2965 2.3407 12 7 1.2941 -4.3048 1.6634 13 6 1.1442 -4.7708 3.0443 14 1 0.8002 -3.9492 3.6727 15 6 2.4903 -5.2913 3.5611 16 6 2.3070 -5.6540 5.0366 17 6 1.2619 -6.7296 5.2023 18 1 1.0932 -6.9008 6.2654 19 6 1.6651 -8.0635 4.5616 20 7 0.4195 -8.6953 4.0896 21 6 0.3287 -9.8988 3.4428 22 1 -0.6359 -10.2757 3.1362 23 6 1.4763 -10.6345 3.1811 24 7 2.6518 -10.1756 3.5552 25 14 1.3525 -12.2760 2.2982 26 1 0.7435 -12.0730 0.9591 27 1 2.7098 -12.8578 2.1421 28 1 0.5056 -13.2024 3.0918 29 6 -0.7323 -7.8037 4.4304 30 6 -0.0826 -6.3908 4.5305 31 1 -0.6795 -5.6919 5.1166 32 6 0.1323 -5.9123 3.0933 33 1 -0.3633 -0.0005 -1.0276 34 1 -0.3633 -0.8897 0.5143 35 1 -0.3633 0.8902 0.5135 36 1 5.1289 -1.8130 1.0256 37 1 4.6078 -2.5325 -0.5168 38 1 5.6514 -1.0906 -0.5149 39 1 0.9007 -2.6348 -0.5153 40 1 2.5930 -3.1866 -0.5172 41 1 1.0981 -4.9033 0.9257 42 1 2.7961 -6.1609 2.9795 43 1 3.2441 -4.5083 3.4770 44 1 2.0077 -4.7757 5.6085 45 1 3.2591 -6.0208 5.4202 46 1 2.3362 -7.8866 3.7211 47 1 2.1516 -8.7008 5.3001 48 1 3.4538 -10.6895 3.3720 49 1 -1.1673 -8.0911 5.3877 50 1 -1.4899 -7.8196 3.6470 51 1 -0.8175 -5.5668 2.6850 52 1 0.4996 -6.7427 2.4905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980256224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:31 Heat of formation + Delta-G solvation = 42.744801 kcal Electronic energy + Delta-G solvation = -31336.105982 eV Core-core repulsion = 27336.831418 eV Total energy + Delta-G solvation = -3999.274564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54978 -39.90199 -38.62957 -35.27569 -33.60327 -33.37750 -33.04519 -31.83062 -30.46679 -29.40531 -28.58643 -27.72161 -26.39639 -25.78120 -24.82709 -22.13656 -21.70069 -20.59774 -20.29382 -19.78175 -19.38039 -18.13518 -17.47421 -16.86835 -16.73170 -15.81803 -15.20483 -15.16222 -15.09902 -14.56470 -14.07566 -13.91859 -13.69851 -13.58304 -13.50225 -13.44022 -13.28154 -13.07551 -12.58041 -12.48260 -12.40957 -12.18060 -12.11035 -11.98174 -11.80134 -11.62409 -11.25399 -11.08597 -11.02416 -10.82277 -10.64647 -10.58479 -10.49170 -10.00476 -9.89644 -9.75974 -9.62337 -9.43516 -9.39828 -9.34465 -8.71426 -8.55654 -8.49046 -6.78920 -5.68171 -3.00520 1.72226 2.51447 2.70366 2.82787 3.40147 3.45122 3.45929 3.48970 4.44228 4.49464 4.50985 4.79647 4.90497 4.98956 5.07904 5.13652 5.18628 5.22350 5.30258 5.36915 5.45636 5.46792 5.51472 5.54509 5.61005 5.66906 5.72549 5.76172 5.81054 5.84089 5.91782 5.99219 6.01232 6.01875 6.13132 6.38111 6.43218 6.51607 6.53370 6.56372 6.66590 6.72170 6.74024 6.80627 6.93491 7.06860 7.14205 7.56596 7.58862 7.69355 7.73460 7.88422 8.26979 8.44241 9.24659 9.83722 10.52713 11.43185 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.002449 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.536023 B =11429.402672 C =11844.809976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.095 3.905 3 N -0.300 5.300 4 N -0.478 5.478 5 H 0.436 0.564 6 C 0.103 3.897 7 C -0.096 4.096 8 C -0.215 4.215 9 C -0.063 4.063 10 C 0.511 3.489 11 O -0.536 6.536 12 N -0.726 5.726 13 C 0.149 3.851 14 H 0.080 0.920 15 C -0.123 4.123 16 C -0.095 4.095 17 C -0.113 4.113 18 H 0.056 0.944 19 C 0.188 3.812 20 N -0.607 5.607 21 C -0.224 4.224 22 H 0.075 0.925 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 C 0.133 3.867 30 C -0.092 4.092 31 H 0.073 0.927 32 C -0.114 4.114 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.399 0.601 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.038 0.962 48 H 0.251 0.749 49 H 0.020 0.980 50 H 0.042 0.958 51 H 0.054 0.946 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 18.139 -7.871 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 N -0.123 5.123 4 N -0.185 5.185 5 H 0.280 0.720 6 C -0.026 4.026 7 C -0.154 4.154 8 C -0.227 4.227 9 C -0.104 4.104 10 C 0.297 3.703 11 O -0.412 6.412 12 N -0.377 5.377 13 C 0.045 3.955 14 H 0.099 0.901 15 C -0.162 4.162 16 C -0.134 4.134 17 C -0.133 4.133 18 H 0.075 0.925 19 C 0.064 3.936 20 N -0.334 5.334 21 C -0.353 4.353 22 H 0.093 0.907 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C 0.007 3.993 30 C -0.112 4.112 31 H 0.091 0.909 32 C -0.152 4.152 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.233 0.767 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.061 0.939 49 H 0.038 0.962 50 H 0.060 0.940 51 H 0.073 0.927 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.792 19.766 -7.269 21.075 hybrid contribution 0.394 -1.854 -0.689 2.017 sum 1.186 17.912 -7.958 19.636 Atomic orbital electron populations 1.20186 0.86884 1.03563 1.02704 1.22133 0.96814 0.90134 0.98155 1.77244 0.86438 1.22284 1.26341 1.46048 1.07272 1.04734 1.60488 0.72022 1.20801 0.96850 0.84944 0.99965 1.20499 0.92759 0.98286 1.03860 1.19006 0.91306 0.94693 1.17678 1.19930 1.03427 0.92496 0.94571 1.20648 0.76725 0.81550 0.91407 1.90688 1.49385 1.54922 1.46213 1.46204 1.68783 1.13328 1.09368 1.21008 0.96209 0.96573 0.81742 0.90145 1.21963 0.96464 1.00899 0.96830 1.20861 0.99082 0.97781 0.95661 1.21660 0.94314 0.97641 0.99641 0.92527 1.21036 0.88250 0.87323 0.96980 1.45055 1.00779 1.19681 1.67922 1.19014 0.93185 0.94012 1.29072 0.90720 1.24758 0.95430 0.98813 1.01556 1.69953 0.97018 1.38300 1.51721 0.86250 0.76487 0.83843 0.79472 1.21299 1.21715 1.21332 1.22207 0.91248 0.88575 0.97246 1.22199 0.97095 0.97160 0.94728 0.90897 1.21709 0.97554 0.97651 0.98244 0.90488 0.90484 0.90847 0.89742 0.89529 0.91121 0.88330 0.88516 0.76740 0.90492 0.92637 0.92668 0.92133 0.93250 0.94415 0.93856 0.96234 0.93991 0.92697 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.12 36.01 0.36 -0.33 16 2 C 0.09 1.15 7.22 -82.40 -0.59 0.56 16 3 N -0.30 -3.89 12.70 33.67 0.43 -3.46 16 4 N -0.48 -5.00 7.36 33.48 0.25 -4.75 16 5 H 0.44 3.12 8.96 -182.61 -1.64 1.48 16 6 C 0.10 1.08 7.21 -82.27 -0.59 0.49 16 7 C -0.10 -0.71 10.22 36.00 0.37 -0.34 16 8 C -0.22 -2.48 4.59 -105.05 -0.48 -2.96 16 9 C -0.06 -0.61 5.64 -29.04 -0.16 -0.77 16 10 C 0.51 6.59 7.80 -10.99 -0.09 6.50 16 11 O -0.54 -9.11 15.69 5.56 0.09 -9.02 16 12 N -0.73 -8.95 5.09 -53.84 -0.27 -9.22 16 13 C 0.15 2.17 2.41 -67.97 -0.16 2.00 16 14 H 0.08 1.27 7.57 -51.93 -0.39 0.88 16 15 C -0.12 -1.95 5.41 -26.56 -0.14 -2.09 16 16 C -0.10 -1.54 5.37 -27.77 -0.15 -1.69 16 17 C -0.11 -2.06 2.70 -90.93 -0.25 -2.31 16 18 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 19 C 0.19 4.38 4.36 -3.34 -0.01 4.37 16 20 N -0.61 -14.85 2.96 -167.96 -0.50 -15.35 16 21 C -0.22 -6.06 10.29 -15.06 -0.16 -6.22 16 22 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 23 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 24 N -0.92 -26.40 10.34 55.49 0.57 -25.83 16 25 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.13 2.63 6.65 -0.81 -0.01 2.63 16 30 C -0.09 -1.54 3.67 -88.56 -0.32 -1.86 16 31 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 32 C -0.11 -1.76 4.28 -26.93 -0.12 -1.87 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.56 7.15 -51.93 -0.37 0.19 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.74 7.92 -51.93 -0.41 0.33 16 40 H 0.10 0.73 7.15 -51.93 -0.37 0.36 16 41 H 0.40 4.10 8.61 -40.82 -0.35 3.74 16 42 H 0.08 1.37 6.69 -51.93 -0.35 1.02 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.05 1.25 5.69 -51.93 -0.30 0.95 16 47 H 0.04 1.01 7.50 -51.93 -0.39 0.62 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.04 0.80 7.98 -51.93 -0.41 0.38 16 51 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 52 H 0.09 1.58 7.18 -51.93 -0.37 1.21 16 LS Contribution 404.45 15.07 6.10 6.10 Total: -1.00 -34.24 404.45 -10.93 -45.17 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -9.96 Total: 3.95 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.60 Total: -4.25 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.48 Total: -58.61 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.24 -10.93 -45.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980256224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.916 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds