Wall clock time and date at job start Wed Apr 1 2020 03:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.90276 * 2 1 4 4 N 1.40085 * 108.20858 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.03109 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92516 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.12786 * 180.02562 * 6 4 3 8 8 C 1.35319 * 107.74770 * 359.97438 * 6 4 3 9 9 C 1.50697 * 126.04107 * 179.97438 * 8 6 4 10 10 C 1.50701 * 109.46836 * 90.00443 * 9 8 6 11 11 O 1.21276 * 120.00183 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99516 * 179.97438 * 10 9 8 13 13 C 1.46508 * 119.99913 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.62553 * 34.60816 * 13 12 10 15 15 C 1.53296 * 109.62935 * 274.01511 * 13 12 10 16 16 C 1.53040 * 107.47879 * 175.34443 * 15 13 12 17 17 C 1.50884 * 110.96363 * 60.64486 * 16 15 13 18 18 H 1.08998 * 109.04236 * 184.96484 * 17 16 15 19 19 C 1.53379 * 113.07929 * 64.61490 * 17 16 15 20 20 N 1.47430 * 106.51547 * 212.47277 * 19 17 16 21 21 C 1.36936 * 125.72108 * 179.29809 * 20 19 17 22 22 H 1.08007 * 119.99692 * 180.02562 * 21 20 19 23 23 C 1.38808 * 120.00414 * 0.02562 * 21 20 19 24 24 N 1.31619 * 120.00222 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99999 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47133 * 60.00293 * 25 23 21 27 27 H 1.48501 * 109.47386 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47463 * 300.00361 * 25 23 21 29 29 C 1.49587 * 108.79448 * 359.41905 * 20 19 17 30 30 C 1.54065 * 113.56578 * 306.66093 * 17 16 15 31 31 H 1.09009 * 112.60279 * 281.75174 * 30 17 16 32 32 C 1.52624 * 109.62986 * 155.00137 * 13 12 10 33 33 H 1.08994 * 109.47140 * 90.02832 * 1 2 3 34 34 H 1.09000 * 109.46925 * 210.02877 * 1 2 3 35 35 H 1.08998 * 109.46805 * 330.02021 * 1 2 3 36 36 H 1.08992 * 109.47366 * 90.01666 * 7 6 4 37 37 H 1.09002 * 109.47397 * 210.02582 * 7 6 4 38 38 H 1.09004 * 109.46963 * 330.01599 * 7 6 4 39 39 H 1.08999 * 109.47396 * 210.00344 * 9 8 6 40 40 H 1.09000 * 109.46941 * 330.00652 * 9 8 6 41 41 H 0.97006 * 120.00573 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.71629 * 296.18361 * 15 13 12 43 43 H 1.09005 * 109.71412 * 56.82236 * 15 13 12 44 44 H 1.08998 * 110.35083 * 299.63887 * 16 15 13 45 45 H 1.09006 * 108.32517 * 180.32953 * 16 15 13 46 46 H 1.09002 * 110.04754 * 331.74040 * 19 17 16 47 47 H 1.08999 * 110.04844 * 93.15749 * 19 17 16 48 48 H 0.96997 * 120.00076 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.49891 * 266.36850 * 29 20 19 50 50 H 1.08999 * 111.26137 * 143.24560 * 29 20 19 51 51 H 1.08994 * 109.18751 * 302.28302 * 32 13 12 52 52 H 1.08993 * 109.18537 * 61.54653 * 32 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3908 1.2079 -0.0004 6 6 3.6142 -0.7154 -0.0015 7 6 4.8350 -1.5990 -0.0019 8 6 2.3271 -1.1331 -0.0009 9 6 1.8599 -2.5658 -0.0022 10 6 1.7052 -3.0449 1.4183 11 8 1.9498 -2.2965 2.3407 12 7 1.2941 -4.3048 1.6634 13 6 1.1442 -4.7708 3.0443 14 1 0.8002 -3.9492 3.6727 15 6 2.4903 -5.2913 3.5611 16 6 2.3070 -5.6540 5.0366 17 6 1.2619 -6.7296 5.2023 18 1 1.0932 -6.9008 6.2654 19 6 1.6651 -8.0635 4.5616 20 7 0.4195 -8.6953 4.0896 21 6 0.3287 -9.8988 3.4428 22 1 -0.6359 -10.2757 3.1362 23 6 1.4763 -10.6345 3.1811 24 7 2.6518 -10.1756 3.5552 25 14 1.3525 -12.2760 2.2982 26 1 0.7435 -12.0730 0.9591 27 1 2.7098 -12.8578 2.1421 28 1 0.5056 -13.2024 3.0918 29 6 -0.7323 -7.8037 4.4304 30 6 -0.0826 -6.3908 4.5305 31 1 -0.6795 -5.6919 5.1166 32 6 0.1323 -5.9123 3.0933 33 1 -0.3633 -0.0005 -1.0276 34 1 -0.3633 -0.8897 0.5143 35 1 -0.3633 0.8902 0.5135 36 1 5.1289 -1.8130 1.0256 37 1 4.6078 -2.5325 -0.5168 38 1 5.6514 -1.0906 -0.5149 39 1 0.9007 -2.6348 -0.5153 40 1 2.5930 -3.1866 -0.5172 41 1 1.0981 -4.9033 0.9257 42 1 2.7961 -6.1609 2.9795 43 1 3.2441 -4.5083 3.4770 44 1 2.0077 -4.7757 5.6085 45 1 3.2591 -6.0208 5.4202 46 1 2.3362 -7.8866 3.7211 47 1 2.1516 -8.7008 5.3001 48 1 3.4538 -10.6895 3.3720 49 1 -1.1673 -8.0911 5.3877 50 1 -1.4899 -7.8196 3.6470 51 1 -0.8175 -5.5668 2.6850 52 1 0.4996 -6.7427 2.4905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980256224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:30 Heat of formation + Delta-G solvation = 20.669751 kcal Electronic energy + Delta-G solvation = -31337.063228 eV Core-core repulsion = 27336.831418 eV Total energy + Delta-G solvation = -4000.231810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34762 -41.16762 -39.90264 -36.72381 -34.86977 -34.36382 -33.93661 -33.45110 -31.82286 -30.65663 -29.77317 -28.51775 -27.70292 -26.93670 -26.56269 -23.64513 -22.93098 -21.94711 -21.22151 -21.03774 -20.28078 -19.51923 -18.75192 -18.26933 -17.82622 -16.99443 -16.66608 -16.42107 -16.10071 -15.98170 -15.64877 -15.00830 -14.90166 -14.70264 -14.60456 -14.30100 -14.12425 -13.98305 -13.83978 -13.79020 -13.49406 -13.27796 -13.22817 -13.11964 -12.90442 -12.85766 -12.70026 -12.62442 -12.60498 -12.48012 -12.19972 -12.01095 -11.72260 -11.62634 -11.45367 -11.24522 -11.07942 -10.94418 -10.67886 -10.57471 -10.16123 -9.85108 -9.30330 -8.79390 -7.76748 -5.10285 0.92853 1.48576 1.51041 1.57094 1.67267 1.84550 2.00233 2.50150 2.54443 3.41189 3.63379 3.73472 3.76940 3.80086 3.88893 3.98898 4.09906 4.20829 4.25587 4.27864 4.39146 4.40052 4.48505 4.59330 4.61416 4.62715 4.66592 4.68774 4.76496 4.81858 4.82400 4.93018 5.00609 5.02652 5.06751 5.10742 5.11826 5.14077 5.24011 5.28546 5.31338 5.34896 5.42390 5.56837 5.67278 5.71587 5.76348 5.79188 5.93806 6.26346 6.46321 6.75768 6.77607 7.17837 7.46375 7.84394 8.51734 9.32959 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.002449 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.536023 B =11429.402672 C =11844.809976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.079 3.921 3 N -0.336 5.336 4 N -0.476 5.476 5 H 0.447 0.553 6 C 0.101 3.899 7 C -0.094 4.094 8 C -0.238 4.238 9 C -0.056 4.056 10 C 0.514 3.486 11 O -0.578 6.578 12 N -0.719 5.719 13 C 0.160 3.840 14 H 0.078 0.922 15 C -0.116 4.116 16 C -0.091 4.091 17 C -0.103 4.103 18 H 0.059 0.941 19 C 0.201 3.799 20 N -0.626 5.626 21 C -0.233 4.233 22 H 0.080 0.920 23 C -0.067 4.067 24 N -0.950 5.950 25 Si 0.972 3.028 26 H -0.275 1.275 27 H -0.298 1.298 28 H -0.282 1.282 29 C 0.127 3.873 30 C -0.079 4.079 31 H 0.108 0.892 32 C -0.103 4.103 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.411 0.589 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.023 0.977 47 H -0.009 1.009 48 H 0.243 0.757 49 H 0.023 0.977 50 H 0.053 0.947 51 H 0.079 0.921 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 18.992 -9.000 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 N -0.160 5.160 4 N -0.185 5.185 5 H 0.293 0.707 6 C -0.029 4.029 7 C -0.152 4.152 8 C -0.249 4.249 9 C -0.096 4.096 10 C 0.302 3.698 11 O -0.457 6.457 12 N -0.370 5.370 13 C 0.055 3.945 14 H 0.097 0.903 15 C -0.154 4.154 16 C -0.130 4.130 17 C -0.122 4.122 18 H 0.077 0.923 19 C 0.076 3.924 20 N -0.353 5.353 21 C -0.363 4.363 22 H 0.098 0.902 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.801 3.199 26 H -0.201 1.201 27 H -0.225 1.225 28 H -0.209 1.209 29 C 0.003 3.997 30 C -0.099 4.099 31 H 0.126 0.874 32 C -0.141 4.141 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.246 0.754 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.041 0.959 47 H 0.009 0.991 48 H 0.053 0.947 49 H 0.041 0.959 50 H 0.071 0.929 51 H 0.097 0.903 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.483 20.629 -8.418 22.286 hybrid contribution 0.781 -2.119 -0.303 2.279 sum 0.298 18.510 -8.722 20.464 Atomic orbital electron populations 1.20263 0.85444 1.03501 1.04002 1.22636 0.98057 0.90322 0.97729 1.77171 0.87572 1.23349 1.27860 1.46116 1.07117 1.05178 1.60086 0.70744 1.21314 0.97766 0.85131 0.98649 1.20592 0.92333 0.98523 1.03787 1.19321 0.91700 0.95395 1.18522 1.19971 1.05455 0.91730 0.92461 1.21193 0.75372 0.80910 0.92350 1.90673 1.51262 1.55993 1.47803 1.46103 1.68475 1.13579 1.08840 1.20738 0.94835 0.95896 0.83031 0.90343 1.21843 0.97449 0.99729 0.96397 1.20841 0.98153 0.97781 0.96204 1.21536 0.95872 0.95498 0.99333 0.92257 1.20726 0.87644 0.89069 0.94912 1.45340 1.02643 1.19796 1.67564 1.19403 0.93348 0.95046 1.28481 0.90196 1.25545 0.95273 1.02187 1.02979 1.70184 0.97349 1.39308 1.53139 0.85244 0.75950 0.79926 0.78764 1.20090 1.22480 1.20890 1.22411 0.90315 0.89501 0.97496 1.22225 0.95779 0.96022 0.95855 0.87401 1.21565 0.98793 0.96772 0.96972 0.88459 0.90213 0.91159 0.90568 0.88349 0.88783 0.85868 0.86168 0.75357 0.93016 0.92651 0.90326 0.92837 0.95928 0.99092 0.94747 0.95943 0.92876 0.90290 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.12 71.24 0.72 -0.55 16 2 C 0.08 1.84 7.22 43.10 0.31 2.15 16 3 N -0.34 -8.54 12.70 -47.38 -0.60 -9.14 16 4 N -0.48 -9.57 7.36 -48.00 -0.35 -9.92 16 5 H 0.45 6.07 8.96 -213.33 -1.91 4.16 16 6 C 0.10 1.97 7.21 41.41 0.30 2.27 16 7 C -0.09 -1.22 10.22 71.24 0.73 -0.49 16 8 C -0.24 -5.08 4.59 -20.14 -0.09 -5.17 16 9 C -0.06 -0.93 5.64 29.10 0.16 -0.76 16 10 C 0.51 12.22 7.80 87.66 0.68 12.91 16 11 O -0.58 -18.89 15.69 -3.02 -0.05 -18.94 16 12 N -0.72 -16.22 5.09 -442.65 -2.25 -18.47 16 13 C 0.16 4.36 2.41 44.96 0.11 4.47 16 14 H 0.08 2.27 7.57 -2.39 -0.02 2.25 16 15 C -0.12 -3.60 5.41 30.71 0.17 -3.43 16 16 C -0.09 -2.87 5.37 29.92 0.16 -2.71 16 17 C -0.10 -3.69 2.70 -10.99 -0.03 -3.72 16 18 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 19 C 0.20 9.67 4.36 86.33 0.38 10.05 16 20 N -0.63 -30.96 2.96 -685.29 -2.03 -32.99 16 21 C -0.23 -12.74 10.29 84.03 0.86 -11.87 16 22 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 23 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 24 N -0.95 -56.46 10.34 21.65 0.22 -56.23 16 25 Si 0.97 45.13 29.55 68.60 2.03 47.15 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 29 C 0.13 4.85 6.65 86.76 0.58 5.43 16 30 C -0.08 -2.47 3.67 -9.46 -0.03 -2.50 16 31 H 0.11 2.72 8.14 -2.38 -0.02 2.71 16 32 C -0.10 -2.97 4.28 30.47 0.13 -2.84 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.30 7.92 -2.39 -0.02 1.28 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.03 7.15 -2.39 -0.02 1.02 16 38 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.12 1.44 7.92 -2.39 -0.02 1.42 16 40 H 0.12 1.43 7.15 -2.39 -0.02 1.42 16 41 H 0.41 7.48 8.61 -92.70 -0.80 6.68 16 42 H 0.05 1.88 6.69 -2.39 -0.02 1.86 16 43 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.02 1.20 5.69 -2.39 -0.01 1.19 16 47 H -0.01 -0.52 7.50 -2.39 -0.02 -0.54 16 48 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.05 1.91 7.98 -2.39 -0.02 1.89 16 51 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.05 1.97 7.18 -2.39 -0.02 1.95 16 Total: -1.00 -76.79 404.45 0.80 -75.99 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -1.77 Total: 22.60 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.60 Total: -0.05 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -5.01 Total: -126.76 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.05 Total: -18.94 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.79 0.80 -75.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980256224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.664 kcal (2) G-P(sol) polarization free energy of solvation -76.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds