Wall clock time and date at job start Wed Apr 1 2020 03:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30839 * 125.89896 * 2 1 4 4 N 1.40081 * 108.20856 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.03646 * 180.02562 * 4 3 2 6 6 C 1.34950 * 107.92320 * 359.75316 * 4 3 2 7 7 C 1.50698 * 126.12691 * 180.24070 * 6 4 3 8 8 C 1.35317 * 107.74393 * 0.39177 * 6 4 3 9 9 C 1.50701 * 126.03758 * 179.87163 * 8 6 4 10 10 C 1.50698 * 109.47263 * 269.71685 * 9 8 6 11 11 O 1.21285 * 120.00049 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00330 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00272 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.03577 * 35.00530 * 13 12 10 15 15 C 1.52528 * 109.04874 * 276.03877 * 13 12 10 16 16 C 1.53805 * 111.70860 * 293.48886 * 15 13 12 17 17 C 1.51617 * 107.03555 * 302.45803 * 16 15 13 18 18 H 1.08996 * 110.50753 * 304.77874 * 17 16 15 19 19 C 1.53065 * 116.66838 * 176.22332 * 17 16 15 20 20 N 1.48660 * 103.44260 * 204.13534 * 19 17 16 21 21 C 1.36938 * 125.77978 * 204.33987 * 20 19 17 22 22 H 1.08007 * 119.99771 * 170.33698 * 21 20 19 23 23 C 1.38810 * 120.00558 * 350.33632 * 21 20 19 24 24 N 1.31621 * 119.99684 * 350.27368 * 23 21 20 25 25 Si 1.86796 * 120.00280 * 170.27926 * 23 21 20 26 26 H 1.48499 * 109.47221 * 94.16316 * 25 23 21 27 27 H 1.48504 * 109.46874 * 214.15800 * 25 23 21 28 28 H 1.48492 * 109.47137 * 334.16080 * 25 23 21 29 29 C 1.48237 * 108.43446 * 24.37822 * 20 19 17 30 30 C 1.52323 * 105.86411 * 3.18461 * 29 20 19 31 31 H 1.08998 * 109.87433 * 87.66885 * 30 29 20 32 32 C 1.51280 * 117.48395 * 214.68685 * 30 29 20 33 33 H 1.09005 * 109.47046 * 269.97818 * 1 2 3 34 34 H 1.08996 * 109.47099 * 29.97546 * 1 2 3 35 35 H 1.08997 * 109.47054 * 149.98027 * 1 2 3 36 36 H 1.09001 * 109.47490 * 270.17941 * 7 6 4 37 37 H 1.09007 * 109.47460 * 30.17875 * 7 6 4 38 38 H 1.08998 * 109.47400 * 150.17706 * 7 6 4 39 39 H 1.08997 * 109.46928 * 149.71360 * 9 8 6 40 40 H 1.09003 * 109.46731 * 29.71512 * 9 8 6 41 41 H 0.97003 * 119.99727 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.02840 * 54.06659 * 15 13 12 43 43 H 1.09000 * 109.03187 * 172.99109 * 15 13 12 44 44 H 1.09001 * 109.94108 * 61.84123 * 16 15 13 45 45 H 1.09001 * 109.94162 * 182.98806 * 16 15 13 46 46 H 1.08999 * 110.62896 * 322.62111 * 19 17 16 47 47 H 1.08994 * 110.62940 * 85.64804 * 19 17 16 48 48 H 0.96995 * 120.00123 * 179.97438 * 24 23 21 49 49 H 1.09007 * 110.17139 * 244.08617 * 29 20 19 50 50 H 1.09000 * 110.17393 * 122.28980 * 29 20 19 51 51 H 1.09007 * 109.95427 * 59.39914 * 32 30 29 52 52 H 1.08996 * 109.85442 * 298.21205 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 1 4.3908 1.2081 -0.0004 6 6 3.6142 -0.7153 0.0046 7 6 4.8350 -1.5988 0.0110 8 6 2.3271 -1.1329 -0.0005 9 6 1.8599 -2.5657 -0.0002 10 6 1.7039 -3.0435 -1.4208 11 8 1.9484 -2.2945 -2.3429 12 7 1.2935 -4.3035 -1.6669 13 6 1.1413 -4.7678 -3.0479 14 1 1.9125 -4.3068 -3.6650 15 6 -0.2295 -4.3458 -3.5667 16 6 -1.3661 -5.0688 -2.8243 17 6 -1.1359 -6.5569 -3.0009 18 1 -1.0643 -6.8094 -4.0588 19 6 -2.1001 -7.4930 -2.2680 20 7 -1.3182 -8.7488 -2.1214 21 6 -1.8419 -10.0050 -1.9699 22 1 -1.1969 -10.8694 -2.0275 23 6 -3.2015 -10.1674 -1.7424 24 7 -3.9549 -9.1200 -1.4819 25 14 -3.9620 -11.8724 -1.8059 26 1 -4.0070 -12.4456 -0.4368 27 1 -5.3410 -11.7793 -2.3491 28 1 -3.1428 -12.7475 -2.6823 29 6 0.1244 -8.4106 -2.1659 30 6 0.1933 -6.8921 -2.2644 31 1 0.1846 -6.4553 -1.2658 32 6 1.3151 -6.2960 -3.0858 33 1 -0.3633 -0.0004 1.0277 34 1 -0.3633 0.8902 -0.5134 35 1 -0.3633 -0.8898 -0.5141 36 1 5.1339 -1.8132 -1.0150 37 1 5.6490 -1.0902 0.5278 38 1 4.6054 -2.5321 0.5251 39 1 0.9013 -2.6351 0.5139 40 1 2.5936 -3.1869 0.5136 41 1 1.0983 -4.9027 -0.9294 42 1 -0.3447 -3.2703 -3.4323 43 1 -0.2950 -4.5801 -4.6292 44 1 -1.3409 -4.8118 -1.7653 45 1 -2.3281 -4.7867 -3.2521 46 1 -2.3612 -7.0869 -1.2908 47 1 -2.9956 -7.6658 -2.8649 48 1 -4.9050 -9.2334 -1.3233 49 1 0.5903 -8.8655 -3.0401 50 1 0.6186 -8.7512 -1.2560 51 1 1.2528 -6.6518 -4.1143 52 1 2.2771 -6.5715 -2.6538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980256228.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:33 Heat of formation + Delta-G solvation = 22.637291 kcal Electronic energy + Delta-G solvation = -31219.073463 eV Core-core repulsion = 27218.926971 eV Total energy + Delta-G solvation = -4000.146491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.34508 -41.35412 -39.78216 -37.03175 -34.64441 -34.35818 -33.93892 -33.33924 -31.98949 -30.69645 -29.81927 -28.53176 -27.82779 -27.05883 -26.54629 -23.49862 -22.48310 -21.79953 -21.45365 -21.07872 -20.22046 -20.01483 -18.70260 -18.28957 -17.94596 -16.99886 -16.69039 -16.25307 -16.03724 -15.66623 -15.60239 -15.31480 -14.87161 -14.70433 -14.52738 -14.30623 -14.20102 -14.11159 -13.88673 -13.81186 -13.43795 -13.33608 -13.21633 -13.12942 -12.91532 -12.87762 -12.79523 -12.62725 -12.52685 -12.46412 -12.34879 -11.90847 -11.85404 -11.70125 -11.44002 -11.35804 -10.97313 -10.78171 -10.74340 -10.56564 -10.15601 -9.85205 -9.28923 -8.80572 -7.83917 -5.16755 0.94417 1.47285 1.48595 1.57962 1.68347 1.86838 2.01643 2.51994 2.54822 3.34701 3.62552 3.66721 3.74092 3.78312 3.80542 3.91480 4.10751 4.19054 4.23602 4.30455 4.40814 4.49332 4.52759 4.55340 4.60437 4.66335 4.70385 4.77653 4.79557 4.81434 4.84672 4.92651 5.00310 5.02690 5.06352 5.08563 5.13283 5.14743 5.20219 5.26305 5.29638 5.33677 5.42409 5.53178 5.62670 5.72702 5.75044 5.76012 5.84309 6.23256 6.48454 6.75848 6.77869 7.11210 7.47721 7.79660 8.48522 9.28104 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.002220 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.206409 B =12608.413077 C =12916.206231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.077 3.923 3 N -0.337 5.337 4 N -0.475 5.475 5 H 0.447 0.553 6 C 0.102 3.898 7 C -0.092 4.092 8 C -0.237 4.237 9 C -0.059 4.059 10 C 0.516 3.484 11 O -0.578 6.578 12 N -0.717 5.717 13 C 0.159 3.841 14 H 0.080 0.920 15 C -0.117 4.117 16 C -0.090 4.090 17 C -0.104 4.104 18 H 0.065 0.935 19 C 0.192 3.808 20 N -0.632 5.632 21 C -0.239 4.239 22 H 0.077 0.923 23 C -0.066 4.066 24 N -0.948 5.948 25 Si 0.973 3.027 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.270 1.270 29 C 0.137 3.863 30 C -0.087 4.087 31 H 0.076 0.924 32 C -0.097 4.097 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.409 0.591 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.000 1.000 47 H 0.024 0.976 48 H 0.246 0.754 49 H 0.028 0.972 50 H 0.027 0.973 51 H 0.081 0.919 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.785 16.064 3.501 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 N -0.161 5.161 4 N -0.185 5.185 5 H 0.293 0.707 6 C -0.028 4.028 7 C -0.151 4.151 8 C -0.248 4.248 9 C -0.099 4.099 10 C 0.303 3.697 11 O -0.457 6.457 12 N -0.370 5.370 13 C 0.054 3.946 14 H 0.099 0.901 15 C -0.156 4.156 16 C -0.128 4.128 17 C -0.124 4.124 18 H 0.083 0.917 19 C 0.068 3.932 20 N -0.358 5.358 21 C -0.368 4.368 22 H 0.095 0.905 23 C -0.260 4.260 24 N -0.597 5.597 25 Si 0.802 3.198 26 H -0.213 1.213 27 H -0.222 1.222 28 H -0.195 1.195 29 C 0.012 3.988 30 C -0.106 4.106 31 H 0.095 0.905 32 C -0.135 4.135 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.246 0.754 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.018 0.982 47 H 0.042 0.958 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.045 0.955 51 H 0.100 0.900 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.821 17.759 2.870 25.322 hybrid contribution -0.800 -1.658 0.247 1.857 sum 17.021 16.101 3.117 23.636 Atomic orbital electron populations 1.20244 0.85887 1.03365 1.03832 1.22583 0.97840 0.90599 0.97897 1.77180 0.87713 1.23341 1.27911 1.46121 1.07012 1.05309 1.60029 0.70709 1.21369 0.97789 0.85066 0.98533 1.20607 0.91994 0.98478 1.03980 1.19306 0.91712 0.95313 1.18511 1.19981 1.05225 0.91834 0.92869 1.21091 0.75312 0.81148 0.92120 1.90677 1.51749 1.55579 1.47707 1.46214 1.68206 1.13547 1.09009 1.20856 0.96618 0.93902 0.83246 0.90143 1.21825 0.94114 0.99443 1.00203 1.21178 0.98067 0.92937 1.00662 1.22158 0.96436 0.94928 0.98866 0.91672 1.20850 0.92668 0.84489 0.95242 1.45458 1.01395 1.03246 1.85736 1.19396 0.92177 0.84331 1.40902 0.90482 1.25603 0.97366 1.00827 1.02176 1.70154 1.05099 1.29561 1.54838 0.85149 0.77397 0.79692 0.77609 1.21340 1.22189 1.19492 1.21192 0.85021 0.94581 0.97968 1.21631 0.95644 0.94043 0.99286 0.90550 1.21495 0.98277 0.92581 1.01127 0.88753 0.91250 0.90432 0.90171 0.88894 0.88087 0.86733 0.85667 0.75401 0.92518 0.91035 0.91794 0.92598 0.98245 0.95798 0.94469 0.95363 0.95474 0.89995 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.12 71.24 0.72 -0.69 16 2 C 0.08 1.81 7.22 43.10 0.31 2.12 16 3 N -0.34 -8.51 12.70 -47.39 -0.60 -9.11 16 4 N -0.48 -8.98 7.36 -48.00 -0.35 -9.34 16 5 H 0.45 5.47 8.96 -213.33 -1.91 3.55 16 6 C 0.10 1.79 7.21 41.40 0.30 2.09 16 7 C -0.09 -0.88 10.22 71.24 0.73 -0.15 16 8 C -0.24 -4.81 4.59 -20.14 -0.09 -4.91 16 9 C -0.06 -0.90 5.64 29.10 0.16 -0.74 16 10 C 0.52 10.87 7.73 87.66 0.68 11.55 16 11 O -0.58 -17.16 15.68 -3.05 -0.05 -17.21 16 12 N -0.72 -13.42 4.66 -441.93 -2.06 -15.48 16 13 C 0.16 3.37 2.70 45.12 0.12 3.49 16 14 H 0.08 1.83 7.55 -2.39 -0.02 1.81 16 15 C -0.12 -2.82 5.42 30.71 0.17 -2.65 16 16 C -0.09 -2.54 5.57 30.41 0.17 -2.37 16 17 C -0.10 -3.56 2.50 -10.32 -0.03 -3.59 16 18 H 0.06 2.29 8.01 -2.39 -0.02 2.27 16 19 C 0.19 9.16 5.05 85.98 0.43 9.59 16 20 N -0.63 -31.74 3.45 -693.08 -2.39 -34.13 16 21 C -0.24 -13.30 10.26 84.03 0.86 -12.44 16 22 H 0.08 4.13 7.85 -2.91 -0.02 4.10 16 23 C -0.07 -3.78 5.41 84.86 0.46 -3.32 16 24 N -0.95 -56.83 10.71 21.65 0.23 -56.60 16 25 Si 0.97 45.62 29.56 68.60 2.03 47.65 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 29 C 0.14 5.19 6.98 85.82 0.60 5.79 16 30 C -0.09 -2.51 2.23 -10.68 -0.02 -2.53 16 31 H 0.08 2.07 6.13 -2.39 -0.01 2.05 16 32 C -0.10 -2.05 5.35 30.32 0.16 -1.89 16 33 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.43 7.92 -2.39 -0.02 1.41 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.10 0.67 7.14 -2.39 -0.02 0.65 16 39 H 0.11 1.46 7.92 -2.39 -0.02 1.44 16 40 H 0.13 1.18 7.14 -2.39 -0.02 1.16 16 41 H 0.41 6.45 6.82 -92.71 -0.63 5.82 16 42 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.76 7.84 -2.39 -0.02 1.74 16 45 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.00 -0.03 8.11 -2.39 -0.02 -0.04 16 47 H 0.02 1.31 6.96 -2.39 -0.02 1.30 16 48 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 49 H 0.03 1.05 8.08 -2.38 -0.02 1.03 16 50 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.08 1.76 8.03 -2.38 -0.02 1.74 16 52 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -77.98 405.64 0.93 -77.05 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -1.61 Total: 17.82 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.73 Total: -0.64 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -5.17 Total: -124.67 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.05 Total: -17.21 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -77.98 0.93 -77.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980256228.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.692 kcal (2) G-P(sol) polarization free energy of solvation -77.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds