Wall clock time and date at job start Wed Apr 1 2020 03:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 H 0.96994 * 126.03749 * 179.73996 * 4 3 2 6 6 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 7 7 C 1.50693 * 126.12568 * 180.02562 * 6 4 3 8 8 C 1.35319 * 107.74352 * 359.97438 * 6 4 3 9 9 C 1.50706 * 126.03437 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47001 * 90.00086 * 9 8 6 11 11 O 1.21281 * 119.99990 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00069 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00214 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.03074 * 33.95802 * 13 12 10 15 15 C 1.52521 * 109.04009 * 274.99997 * 13 12 10 16 16 C 1.53824 * 111.70064 * 185.39561 * 15 13 12 17 17 C 1.51615 * 107.01574 * 57.53634 * 16 15 13 18 18 H 1.09000 * 110.50786 * 56.32878 * 17 16 15 19 19 C 1.53062 * 116.67652 * 183.72964 * 17 16 15 20 20 N 1.48661 * 103.44614 * 155.89296 * 19 17 16 21 21 C 1.36937 * 125.78371 * 155.66025 * 20 19 17 22 22 H 1.08003 * 119.99726 * 179.97438 * 21 20 19 23 23 C 1.38814 * 120.00158 * 359.96868 * 21 20 19 24 24 N 1.31615 * 120.00158 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99962 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47052 * 90.00123 * 25 23 21 27 27 H 1.48500 * 109.47186 * 210.00355 * 25 23 21 28 28 H 1.48499 * 109.47009 * 330.00252 * 25 23 21 29 29 C 1.48244 * 108.42840 * 335.61986 * 20 19 17 30 30 C 1.52324 * 105.86630 * 356.82123 * 29 20 19 31 31 H 1.09003 * 109.88190 * 272.31801 * 30 29 20 32 32 C 1.51440 * 117.44941 * 145.30623 * 30 29 20 33 33 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 34 34 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 35 35 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 36 36 H 1.09004 * 109.47489 * 269.97053 * 7 6 4 37 37 H 1.08997 * 109.47579 * 29.97552 * 7 6 4 38 38 H 1.08998 * 109.47027 * 149.97535 * 7 6 4 39 39 H 1.09000 * 109.46646 * 209.99544 * 9 8 6 40 40 H 1.09000 * 109.47248 * 330.00261 * 9 8 6 41 41 H 0.97000 * 119.99813 * 0.02562 * 12 10 9 42 42 H 1.08996 * 109.03657 * 305.96574 * 15 13 12 43 43 H 1.08998 * 109.03441 * 64.83020 * 15 13 12 44 44 H 1.08999 * 109.94278 * 176.90977 * 16 15 13 45 45 H 1.08993 * 109.94404 * 298.15587 * 16 15 13 46 46 H 1.09004 * 110.62717 * 274.37944 * 19 17 16 47 47 H 1.09004 * 110.62962 * 37.39523 * 19 17 16 48 48 H 0.97003 * 120.00167 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.16757 * 115.92160 * 29 20 19 50 50 H 1.09003 * 110.17059 * 237.71853 * 29 20 19 51 51 H 1.09004 * 109.94278 * 61.84835 * 32 30 29 52 52 H 1.09000 * 109.93777 * 300.62278 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 1 4.3908 1.2080 -0.0108 6 6 3.6143 -0.7153 -0.0031 7 6 4.8351 -1.5988 -0.0070 8 6 2.3272 -1.1329 0.0048 9 6 1.8600 -2.5657 0.0109 10 6 1.7120 -3.0397 1.4338 11 8 1.9617 -2.2883 2.3524 12 7 1.3021 -4.2987 1.6855 13 6 1.1576 -4.7594 3.0686 14 1 0.8269 -3.9257 3.6881 15 6 2.5109 -5.2488 3.5740 16 6 2.4032 -5.8707 4.9767 17 6 1.3984 -7.0024 4.8843 18 1 1.6987 -7.7181 4.1190 19 6 1.0542 -7.7241 6.1895 20 7 -0.2928 -8.2943 5.9244 21 6 -0.8396 -9.3819 6.5516 22 1 -1.8309 -9.7173 6.2848 23 6 -0.1196 -10.0533 7.5303 24 7 1.0883 -9.6443 7.8557 25 14 -0.8652 -11.5373 8.3854 26 1 -0.5152 -12.7693 7.6338 27 1 -0.3311 -11.6323 9.7677 28 1 -2.3421 -11.3902 8.4344 29 6 -0.9442 -7.4854 4.8666 30 6 0.0241 -6.3520 4.5534 31 1 -0.1597 -5.5117 5.2229 32 6 0.0964 -5.8720 3.1189 33 1 -0.3634 0.0038 1.0276 34 1 -0.3633 0.8880 -0.5172 35 1 -0.3633 -0.8919 -0.5105 36 1 5.1244 -1.8144 -1.0356 37 1 5.6537 -1.0896 0.5016 38 1 4.6102 -2.5315 0.5102 39 1 0.8985 -2.6365 -0.4975 40 1 2.5908 -3.1883 -0.5052 41 1 1.1028 -4.8998 0.9508 42 1 2.8994 -5.9964 2.8825 43 1 3.2023 -4.4069 3.6106 44 1 3.3733 -6.2593 5.2866 45 1 2.0562 -5.1227 5.6894 46 1 1.7741 -8.5174 6.3910 47 1 1.0162 -7.0188 7.0198 48 1 1.5913 -10.1133 8.5399 49 1 -1.1112 -8.0936 3.9776 50 1 -1.8896 -7.0825 5.2301 51 1 -0.8713 -5.4769 2.8098 52 1 0.3888 -6.6944 2.4660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980256231.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:42 Heat of formation + Delta-G solvation = 44.460567 kcal Electronic energy + Delta-G solvation = -30687.880538 eV Core-core repulsion = 26688.680375 eV Total energy + Delta-G solvation = -3999.200163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64857 -40.03244 -38.70874 -35.63986 -33.70413 -33.52958 -33.15479 -31.81687 -30.68086 -29.57563 -28.61028 -27.82057 -26.57343 -25.88818 -24.81115 -22.00815 -21.47372 -20.41083 -20.37606 -19.72192 -19.60328 -19.20046 -17.59538 -17.14764 -16.69475 -15.89329 -15.33945 -15.29649 -14.89048 -14.40698 -14.31489 -14.03473 -13.82468 -13.70807 -13.62121 -13.58863 -13.28819 -13.26143 -12.67717 -12.59469 -12.45897 -12.37855 -12.18531 -12.02836 -11.83413 -11.82017 -11.58468 -11.30288 -10.90767 -10.83596 -10.72958 -10.62516 -10.44529 -10.03809 -10.00098 -9.84755 -9.77579 -9.54458 -9.44149 -9.22604 -8.90417 -8.62226 -8.59476 -6.79080 -5.60984 -3.01785 1.62440 2.41036 2.62270 2.66313 3.28973 3.42007 3.46897 3.49026 4.34011 4.40086 4.51351 4.67667 4.74102 4.84131 4.91058 4.95718 5.03625 5.09207 5.16368 5.24378 5.30467 5.37106 5.43265 5.44674 5.48555 5.55061 5.67192 5.68819 5.72102 5.72779 5.75217 5.83940 5.89609 6.10198 6.19729 6.23936 6.29675 6.32698 6.43109 6.44168 6.56069 6.60983 6.67596 6.72609 6.90304 7.05307 7.08753 7.47916 7.52475 7.59032 7.65845 7.90091 8.26919 8.37533 9.24372 9.85683 10.52793 11.43439 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.001935 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.129764 B =14469.658205 C =14972.617785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.094 3.906 3 N -0.298 5.298 4 N -0.477 5.477 5 H 0.437 0.563 6 C 0.103 3.897 7 C -0.095 4.095 8 C -0.217 4.217 9 C -0.061 4.061 10 C 0.509 3.491 11 O -0.531 6.531 12 N -0.730 5.730 13 C 0.149 3.851 14 H 0.083 0.917 15 C -0.122 4.122 16 C -0.099 4.099 17 C -0.115 4.115 18 H 0.069 0.931 19 C 0.163 3.837 20 N -0.609 5.609 21 C -0.219 4.219 22 H 0.076 0.924 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.145 3.855 30 C -0.104 4.104 31 H 0.070 0.930 32 C -0.105 4.105 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.398 0.602 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.012 0.988 48 H 0.251 0.749 49 H 0.022 0.978 50 H 0.024 0.976 51 H 0.064 0.936 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 16.240 -20.891 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 N -0.122 5.122 4 N -0.184 5.184 5 H 0.280 0.720 6 C -0.026 4.026 7 C -0.153 4.153 8 C -0.229 4.229 9 C -0.103 4.103 10 C 0.295 3.705 11 O -0.406 6.406 12 N -0.381 5.381 13 C 0.045 3.955 14 H 0.101 0.899 15 C -0.161 4.161 16 C -0.138 4.138 17 C -0.135 4.135 18 H 0.087 0.913 19 C 0.038 3.962 20 N -0.335 5.335 21 C -0.347 4.347 22 H 0.094 0.906 23 C -0.209 4.209 24 N -0.572 5.572 25 Si 0.744 3.256 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.019 3.981 30 C -0.123 4.123 31 H 0.088 0.912 32 C -0.143 4.143 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.231 0.769 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.030 0.970 48 H 0.062 0.938 49 H 0.040 0.960 50 H 0.042 0.958 51 H 0.083 0.917 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.833 17.918 -20.042 27.510 hybrid contribution -0.023 -1.556 0.211 1.571 sum 5.810 16.362 -19.831 26.358 Atomic orbital electron populations 1.20202 0.86836 1.03060 1.03325 1.22144 0.96858 0.90136 0.98115 1.77270 0.86404 1.22255 1.26238 1.46065 1.07331 1.04747 1.60280 0.71959 1.20804 0.96806 0.84986 1.00025 1.20479 0.92986 0.98660 1.03188 1.18981 0.91311 0.94661 1.17910 1.19916 1.03404 0.92613 0.94327 1.20711 0.76725 0.81521 0.91523 1.90716 1.48829 1.54528 1.46548 1.46218 1.69260 1.13478 1.09122 1.21061 0.95455 0.97086 0.81883 0.89859 1.21879 0.96521 1.00111 0.97593 1.21256 0.99738 0.97471 0.95310 1.22374 0.93385 0.96002 1.01707 0.91290 1.21646 0.88341 0.96233 0.89933 1.45139 1.14549 1.31505 1.42313 1.19087 0.99051 1.02451 1.14157 0.90585 1.24776 0.96832 0.99781 0.99517 1.69819 1.11140 1.41695 1.34499 0.86091 0.78144 0.82573 0.78811 1.21684 1.21720 1.20805 1.20953 0.94055 0.90973 0.92098 1.21696 0.97766 0.98159 0.94680 0.91191 1.21523 0.97640 0.97261 0.97910 0.90231 0.90885 0.90534 0.90047 0.90899 0.89587 0.88276 0.88571 0.76874 0.92299 0.92252 0.91734 0.91959 0.87876 0.96953 0.93835 0.96028 0.95843 0.91740 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.26 36.01 0.37 -0.27 16 2 C 0.09 1.06 7.22 -82.40 -0.59 0.46 16 3 N -0.30 -3.63 12.70 33.67 0.43 -3.20 16 4 N -0.48 -4.55 7.36 33.48 0.25 -4.30 16 5 H 0.44 2.75 8.96 -182.61 -1.64 1.11 16 6 C 0.10 0.95 7.21 -82.26 -0.59 0.36 16 7 C -0.09 -0.57 10.04 36.00 0.36 -0.20 16 8 C -0.22 -2.21 4.59 -105.05 -0.48 -2.69 16 9 C -0.06 -0.48 5.61 -29.03 -0.16 -0.64 16 10 C 0.51 5.61 7.78 -10.99 -0.09 5.53 16 11 O -0.53 -8.32 15.67 5.56 0.09 -8.23 16 12 N -0.73 -7.07 5.03 -53.62 -0.27 -7.34 16 13 C 0.15 1.86 2.45 -67.74 -0.17 1.69 16 14 H 0.08 1.23 7.52 -51.93 -0.39 0.84 16 15 C -0.12 -1.62 5.38 -26.55 -0.14 -1.76 16 16 C -0.10 -1.55 5.71 -27.00 -0.15 -1.70 16 17 C -0.12 -2.11 2.47 -89.90 -0.22 -2.34 16 18 H 0.07 1.29 8.06 -51.93 -0.42 0.87 16 19 C 0.16 3.93 5.52 -2.82 -0.02 3.92 16 20 N -0.61 -15.68 3.45 -170.41 -0.59 -16.26 16 21 C -0.22 -6.15 10.30 -15.06 -0.16 -6.31 16 22 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 23 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 24 N -0.92 -27.08 10.11 55.49 0.56 -26.52 16 25 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.14 2.99 6.98 -3.43 -0.02 2.97 16 30 C -0.10 -1.76 2.30 -90.37 -0.21 -1.97 16 31 H 0.07 1.24 7.94 -51.93 -0.41 0.82 16 32 C -0.10 -1.34 5.17 -27.08 -0.14 -1.48 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.48 7.25 -51.93 -0.38 0.11 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.56 7.77 -51.93 -0.40 0.16 16 39 H 0.10 0.56 7.25 -51.93 -0.38 0.19 16 40 H 0.10 0.52 7.77 -51.93 -0.40 0.11 16 41 H 0.40 2.68 8.61 -40.82 -0.35 2.33 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.01 7.98 -51.93 -0.41 0.59 16 46 H 0.10 2.81 5.93 -51.93 -0.31 2.51 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 52 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -35.70 408.40 -11.02 -46.72 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -10.10 Total: 0.71 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.51 Total: -4.92 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.38 Total: -57.62 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.70 -11.02 -46.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980256231.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.176 kcal (2) G-P(sol) polarization free energy of solvation -35.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds