Wall clock time and date at job start Wed Apr 1 2020 03:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 H 0.96994 * 126.03749 * 179.73996 * 4 3 2 6 6 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 7 7 C 1.50693 * 126.12568 * 180.02562 * 6 4 3 8 8 C 1.35319 * 107.74352 * 359.97438 * 6 4 3 9 9 C 1.50706 * 126.03437 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47001 * 90.00086 * 9 8 6 11 11 O 1.21281 * 119.99990 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00069 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00214 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.03074 * 33.95802 * 13 12 10 15 15 C 1.52521 * 109.04009 * 274.99997 * 13 12 10 16 16 C 1.53824 * 111.70064 * 185.39561 * 15 13 12 17 17 C 1.51615 * 107.01574 * 57.53634 * 16 15 13 18 18 H 1.09000 * 110.50786 * 56.32878 * 17 16 15 19 19 C 1.53062 * 116.67652 * 183.72964 * 17 16 15 20 20 N 1.48661 * 103.44614 * 155.89296 * 19 17 16 21 21 C 1.36937 * 125.78371 * 155.66025 * 20 19 17 22 22 H 1.08003 * 119.99726 * 179.97438 * 21 20 19 23 23 C 1.38814 * 120.00158 * 359.96868 * 21 20 19 24 24 N 1.31615 * 120.00158 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99962 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47052 * 90.00123 * 25 23 21 27 27 H 1.48500 * 109.47186 * 210.00355 * 25 23 21 28 28 H 1.48499 * 109.47009 * 330.00252 * 25 23 21 29 29 C 1.48244 * 108.42840 * 335.61986 * 20 19 17 30 30 C 1.52324 * 105.86630 * 356.82123 * 29 20 19 31 31 H 1.09003 * 109.88190 * 272.31801 * 30 29 20 32 32 C 1.51440 * 117.44941 * 145.30623 * 30 29 20 33 33 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 34 34 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 35 35 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 36 36 H 1.09004 * 109.47489 * 269.97053 * 7 6 4 37 37 H 1.08997 * 109.47579 * 29.97552 * 7 6 4 38 38 H 1.08998 * 109.47027 * 149.97535 * 7 6 4 39 39 H 1.09000 * 109.46646 * 209.99544 * 9 8 6 40 40 H 1.09000 * 109.47248 * 330.00261 * 9 8 6 41 41 H 0.97000 * 119.99813 * 0.02562 * 12 10 9 42 42 H 1.08996 * 109.03657 * 305.96574 * 15 13 12 43 43 H 1.08998 * 109.03441 * 64.83020 * 15 13 12 44 44 H 1.08999 * 109.94278 * 176.90977 * 16 15 13 45 45 H 1.08993 * 109.94404 * 298.15587 * 16 15 13 46 46 H 1.09004 * 110.62717 * 274.37944 * 19 17 16 47 47 H 1.09004 * 110.62962 * 37.39523 * 19 17 16 48 48 H 0.97003 * 120.00167 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.16757 * 115.92160 * 29 20 19 50 50 H 1.09003 * 110.17059 * 237.71853 * 29 20 19 51 51 H 1.09004 * 109.94278 * 61.84835 * 32 30 29 52 52 H 1.09000 * 109.93777 * 300.62278 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 1 4.3908 1.2080 -0.0108 6 6 3.6143 -0.7153 -0.0031 7 6 4.8351 -1.5988 -0.0070 8 6 2.3272 -1.1329 0.0048 9 6 1.8600 -2.5657 0.0109 10 6 1.7120 -3.0397 1.4338 11 8 1.9617 -2.2883 2.3524 12 7 1.3021 -4.2987 1.6855 13 6 1.1576 -4.7594 3.0686 14 1 0.8269 -3.9257 3.6881 15 6 2.5109 -5.2488 3.5740 16 6 2.4032 -5.8707 4.9767 17 6 1.3984 -7.0024 4.8843 18 1 1.6987 -7.7181 4.1190 19 6 1.0542 -7.7241 6.1895 20 7 -0.2928 -8.2943 5.9244 21 6 -0.8396 -9.3819 6.5516 22 1 -1.8309 -9.7173 6.2848 23 6 -0.1196 -10.0533 7.5303 24 7 1.0883 -9.6443 7.8557 25 14 -0.8652 -11.5373 8.3854 26 1 -0.5152 -12.7693 7.6338 27 1 -0.3311 -11.6323 9.7677 28 1 -2.3421 -11.3902 8.4344 29 6 -0.9442 -7.4854 4.8666 30 6 0.0241 -6.3520 4.5534 31 1 -0.1597 -5.5117 5.2229 32 6 0.0964 -5.8720 3.1189 33 1 -0.3634 0.0038 1.0276 34 1 -0.3633 0.8880 -0.5172 35 1 -0.3633 -0.8919 -0.5105 36 1 5.1244 -1.8144 -1.0356 37 1 5.6537 -1.0896 0.5016 38 1 4.6102 -2.5315 0.5102 39 1 0.8985 -2.6365 -0.4975 40 1 2.5908 -3.1883 -0.5052 41 1 1.1028 -4.8998 0.9508 42 1 2.8994 -5.9964 2.8825 43 1 3.2023 -4.4069 3.6106 44 1 3.3733 -6.2593 5.2866 45 1 2.0562 -5.1227 5.6894 46 1 1.7741 -8.5174 6.3910 47 1 1.0162 -7.0188 7.0198 48 1 1.5913 -10.1133 8.5399 49 1 -1.1112 -8.0936 3.9776 50 1 -1.8896 -7.0825 5.2301 51 1 -0.8713 -5.4769 2.8098 52 1 0.3888 -6.6944 2.4660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980256231.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:41 Heat of formation + Delta-G solvation = 20.483620 kcal Electronic energy + Delta-G solvation = -30688.920257 eV Core-core repulsion = 26688.680375 eV Total energy + Delta-G solvation = -4000.239882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.33972 -41.15681 -39.92557 -37.04596 -34.92823 -34.36375 -33.93387 -33.43210 -31.99986 -30.66270 -29.79581 -28.53991 -27.79881 -27.10741 -26.34195 -23.54431 -22.49291 -21.57212 -21.27554 -21.11220 -20.76203 -20.11933 -18.77525 -18.28030 -17.93801 -16.93477 -16.78705 -16.17038 -16.04030 -15.77363 -15.59751 -15.43145 -14.88852 -14.74758 -14.56766 -14.27286 -14.11280 -14.08538 -13.96907 -13.55736 -13.47536 -13.43204 -13.21361 -13.15886 -13.02871 -12.90002 -12.81172 -12.72909 -12.62565 -12.50149 -12.08382 -11.93298 -11.71665 -11.66193 -11.45041 -11.42830 -11.15236 -10.81787 -10.74312 -10.63743 -10.16832 -9.89186 -9.28791 -8.86199 -7.74712 -5.18518 0.94021 1.46801 1.49026 1.57531 1.67268 1.85819 2.01643 2.45625 2.52423 3.34990 3.61547 3.68022 3.74690 3.76006 3.78198 3.95971 4.11061 4.16661 4.20506 4.31800 4.40806 4.44981 4.51916 4.55660 4.61808 4.63648 4.72469 4.73545 4.75917 4.77219 4.82377 4.87094 4.99218 5.01399 5.05270 5.11090 5.11739 5.12434 5.20668 5.26566 5.28075 5.31534 5.42586 5.49041 5.59518 5.67307 5.77299 5.77796 5.85913 6.31181 6.47208 6.76846 6.79820 7.11207 7.50267 7.78661 8.45669 9.27679 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.001935 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.129764 B =14469.658205 C =14972.617785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.076 3.924 3 N -0.340 5.340 4 N -0.477 5.477 5 H 0.446 0.554 6 C 0.100 3.900 7 C -0.092 4.092 8 C -0.239 4.239 9 C -0.053 4.053 10 C 0.511 3.489 11 O -0.582 6.582 12 N -0.714 5.714 13 C 0.158 3.842 14 H 0.059 0.941 15 C -0.111 4.111 16 C -0.095 4.095 17 C -0.100 4.100 18 H 0.074 0.926 19 C 0.166 3.834 20 N -0.634 5.634 21 C -0.235 4.235 22 H 0.081 0.919 23 C -0.072 4.072 24 N -0.951 5.951 25 Si 0.980 3.020 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.271 1.271 29 C 0.139 3.861 30 C -0.090 4.090 31 H 0.058 0.942 32 C -0.091 4.091 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.417 0.583 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.068 0.932 47 H -0.020 1.020 48 H 0.245 0.755 49 H 0.036 0.964 50 H 0.022 0.978 51 H 0.084 0.916 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 15.663 -23.921 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 N -0.164 5.164 4 N -0.186 5.186 5 H 0.292 0.708 6 C -0.029 4.029 7 C -0.150 4.150 8 C -0.250 4.250 9 C -0.093 4.093 10 C 0.299 3.701 11 O -0.461 6.461 12 N -0.366 5.366 13 C 0.052 3.948 14 H 0.077 0.923 15 C -0.149 4.149 16 C -0.134 4.134 17 C -0.120 4.120 18 H 0.092 0.908 19 C 0.041 3.959 20 N -0.360 5.360 21 C -0.364 4.364 22 H 0.099 0.901 23 C -0.265 4.265 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.196 1.196 29 C 0.015 3.985 30 C -0.109 4.109 31 H 0.077 0.923 32 C -0.130 4.130 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.255 0.745 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.086 0.914 47 H -0.002 1.002 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.040 0.960 51 H 0.103 0.897 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.605 17.340 -23.135 29.450 hybrid contribution 0.046 -1.346 1.196 1.801 sum 5.651 15.994 -21.939 27.732 Atomic orbital electron populations 1.20280 0.85572 1.04523 1.02967 1.22654 0.98029 0.90532 0.97795 1.77187 0.87687 1.23564 1.27965 1.46138 1.07065 1.05368 1.60040 0.70811 1.21402 0.97934 0.85040 0.98560 1.20586 0.91794 0.97808 1.04845 1.19355 0.91540 0.95629 1.18477 1.19982 1.05690 0.91484 0.92180 1.21297 0.75372 0.81072 0.92381 1.90710 1.51124 1.55920 1.48374 1.45980 1.68620 1.13580 1.08408 1.20741 0.94698 0.96052 0.83261 0.92284 1.21756 0.97088 1.00146 0.95959 1.21204 0.98798 0.96234 0.97133 1.22145 0.95248 0.96406 0.98198 0.90782 1.21407 0.87492 0.94895 0.92099 1.45507 1.15569 1.31697 1.43235 1.19481 0.99347 1.03205 1.14365 0.90127 1.25648 0.97430 1.02770 1.00611 1.70088 1.12337 1.42813 1.34844 0.85048 0.77807 0.79171 0.77132 1.21015 1.22279 1.19588 1.21149 0.94532 0.91715 0.91098 1.21590 0.95314 0.96390 0.97642 0.92317 1.21423 0.98917 0.97806 0.94813 0.91340 0.90456 0.88119 0.87571 0.90053 0.89797 0.85676 0.85467 0.74539 0.90454 0.92656 0.91699 0.93135 0.91376 1.00226 0.94500 0.94586 0.95990 0.89738 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.26 71.24 0.73 -0.45 16 2 C 0.08 1.64 7.22 43.10 0.31 1.95 16 3 N -0.34 -8.25 12.70 -47.38 -0.60 -8.86 16 4 N -0.48 -8.80 7.36 -48.00 -0.35 -9.15 16 5 H 0.45 5.43 8.96 -213.34 -1.91 3.52 16 6 C 0.10 1.68 7.21 41.40 0.30 1.98 16 7 C -0.09 -0.85 10.04 71.23 0.71 -0.13 16 8 C -0.24 -4.38 4.59 -20.14 -0.09 -4.48 16 9 C -0.05 -0.63 5.61 29.10 0.16 -0.46 16 10 C 0.51 9.82 7.78 87.66 0.68 10.50 16 11 O -0.58 -17.60 15.67 -3.03 -0.05 -17.65 16 12 N -0.71 -11.14 5.03 -441.95 -2.22 -13.37 16 13 C 0.16 3.52 2.45 45.12 0.11 3.63 16 14 H 0.06 1.67 7.52 -2.39 -0.02 1.65 16 15 C -0.11 -2.68 5.38 30.71 0.17 -2.52 16 16 C -0.09 -2.93 5.71 30.42 0.17 -2.75 16 17 C -0.10 -3.66 2.47 -10.33 -0.03 -3.68 16 18 H 0.07 2.65 8.06 -2.39 -0.02 2.63 16 19 C 0.17 8.32 5.52 85.98 0.48 8.79 16 20 N -0.63 -33.19 3.45 -693.05 -2.39 -35.58 16 21 C -0.23 -13.37 10.30 84.03 0.87 -12.51 16 22 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 23 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 24 N -0.95 -57.80 10.11 21.65 0.22 -57.58 16 25 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 C 0.14 5.65 6.98 85.82 0.60 6.25 16 30 C -0.09 -2.94 2.30 -10.63 -0.02 -2.97 16 31 H 0.06 2.06 7.94 -2.39 -0.02 2.04 16 32 C -0.09 -2.03 5.17 30.37 0.16 -1.87 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.02 7.25 -2.39 -0.02 1.00 16 36 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 0.85 7.77 -2.39 -0.02 0.83 16 39 H 0.13 0.84 7.25 -2.39 -0.02 0.83 16 40 H 0.13 0.73 7.77 -2.39 -0.02 0.72 16 41 H 0.42 3.47 8.61 -92.71 -0.80 2.67 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.05 1.66 7.98 -2.39 -0.02 1.64 16 46 H 0.07 3.90 5.93 -2.38 -0.01 3.89 16 47 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 49 H 0.04 1.37 8.08 -2.39 -0.02 1.35 16 50 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.09 1.70 8.06 -2.39 -0.02 1.68 16 Total: -1.00 -81.93 408.40 0.62 -81.31 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -1.78 Total: 15.02 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.77 Total: -2.44 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -5.35 Total: -124.54 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -81.93 0.62 -81.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980256231.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.794 kcal (2) G-P(sol) polarization free energy of solvation -81.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds