Wall clock time and date at job start Wed Apr 1 2020 04:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34671 * 125.98962 * 2 1 4 4 N 1.36882 * 106.81824 * 179.97438 * 3 2 1 5 5 C 1.46505 * 126.39465 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46985 * 305.96075 * 5 4 3 7 7 C 1.53001 * 109.47025 * 65.96185 * 5 4 3 8 8 C 1.50703 * 109.46675 * 185.96281 * 5 4 3 9 9 O 1.21280 * 119.99585 * 241.15901 * 8 5 4 10 10 N 1.34773 * 120.00243 * 61.15803 * 8 5 4 11 11 C 1.47181 * 135.99348 * 4.05514 * 10 8 5 12 12 C 1.53186 * 87.73367 * 153.41895 * 11 10 8 13 13 C 1.47161 * 135.99828 * 184.42156 * 10 8 5 14 14 C 1.52518 * 114.08786 * 139.65968 * 12 11 10 15 15 C 1.53201 * 109.35990 * 190.15181 * 14 12 11 16 16 C 1.53143 * 109.35331 * 301.10242 * 15 14 12 17 17 N 1.46897 * 109.10720 * 56.51524 * 16 15 14 18 18 C 1.36939 * 120.69911 * 124.57072 * 17 16 15 19 19 H 1.07994 * 120.00210 * 329.35830 * 18 17 16 20 20 C 1.38812 * 119.99885 * 149.35554 * 18 17 16 21 21 N 1.31620 * 119.99978 * 341.80012 * 20 18 17 22 22 Si 1.86795 * 120.00091 * 161.80381 * 20 18 17 23 23 H 1.48500 * 109.47156 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47384 * 120.00006 * 22 20 18 25 25 H 1.48501 * 109.47457 * 239.99995 * 22 20 18 26 26 C 1.47146 * 118.60498 * 304.59782 * 17 16 15 27 27 C 1.35038 * 107.20485 * 0.25890 * 4 3 2 28 28 N 1.30498 * 108.70170 * 359.56491 * 27 4 3 29 29 H 1.09003 * 109.46853 * 90.00630 * 1 2 3 30 30 H 1.08997 * 109.47376 * 210.00191 * 1 2 3 31 31 H 1.08998 * 109.47530 * 330.00402 * 1 2 3 32 32 H 1.07998 * 126.58931 * 0.02828 * 3 2 1 33 33 H 1.08991 * 109.47421 * 303.44062 * 6 5 4 34 34 H 1.09005 * 109.46670 * 183.44007 * 6 5 4 35 35 H 1.09002 * 109.47179 * 63.44641 * 6 5 4 36 36 H 1.08996 * 109.47171 * 303.11187 * 7 5 4 37 37 H 1.09006 * 109.46893 * 63.10953 * 7 5 4 38 38 H 1.08997 * 109.47222 * 183.10830 * 7 5 4 39 39 H 1.08999 * 113.49205 * 268.11252 * 11 10 8 40 40 H 1.09004 * 113.49052 * 38.62597 * 11 10 8 41 41 H 1.09006 * 113.49131 * 321.37239 * 13 10 8 42 42 H 1.09000 * 113.49075 * 91.81867 * 13 10 8 43 43 H 1.09008 * 109.48925 * 310.12169 * 14 12 11 44 44 H 1.08999 * 109.48732 * 70.18507 * 14 12 11 45 45 H 1.08995 * 109.48667 * 181.13643 * 15 14 12 46 46 H 1.09002 * 109.51013 * 61.07852 * 15 14 12 47 47 H 1.08992 * 109.53157 * 296.62774 * 16 15 14 48 48 H 1.09002 * 109.53037 * 176.40100 * 16 15 14 49 49 H 0.97000 * 119.99836 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.63136 * 291.54469 * 26 17 16 51 51 H 1.08992 * 109.81201 * 171.02849 * 26 17 16 52 52 H 1.07997 * 125.64919 * 179.71311 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6401 0.0006 5 6 4.7996 1.4686 0.0003 6 6 4.7415 2.4548 -1.1680 7 6 4.8877 2.2425 1.3172 8 6 6.0130 0.5869 -0.1465 9 8 6.8540 0.5626 0.7270 10 7 6.1634 -0.1746 -1.2482 11 6 5.4344 -0.3624 -2.5130 12 6 6.7622 -0.7933 -3.1438 13 6 7.1250 -1.1877 -1.7116 14 6 6.6414 -1.9716 -4.1047 15 6 8.0416 -2.4725 -4.4727 16 6 8.8347 -1.3329 -5.1190 17 7 8.8697 -0.1888 -4.1983 18 6 10.0629 0.3582 -3.8080 19 1 10.9431 -0.2631 -3.7335 20 6 10.1410 1.7113 -3.5080 21 7 9.2025 2.5335 -3.9271 22 14 11.5781 2.3652 -2.5099 23 1 12.4895 1.2456 -2.1621 24 1 12.3169 3.3756 -3.3090 25 1 11.0701 2.9944 -1.2643 26 6 7.5957 0.3567 -3.7037 27 6 3.5449 -0.7094 -0.0049 28 7 2.2952 -1.0852 0.0007 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.9750 2.1201 0.0004 33 1 4.6173 1.9056 -2.1012 34 1 5.6671 3.0292 -1.2049 35 1 3.8988 3.1322 -1.0301 36 1 3.9845 2.8381 1.4497 37 1 4.9847 1.5404 2.1454 38 1 5.7566 2.9001 1.2947 39 1 4.6932 -1.1605 -2.4728 40 1 5.0357 0.5641 -2.9263 41 1 8.1576 -0.9600 -1.4466 42 1 6.8390 -2.2077 -1.4550 43 1 6.0817 -2.7753 -3.6261 44 1 6.1203 -1.6526 -5.0074 45 1 7.9582 -3.3017 -5.1751 46 1 8.5562 -2.8087 -3.5725 47 1 8.3529 -1.0363 -6.0506 48 1 9.8518 -1.6671 -5.3238 49 1 9.2569 3.4789 -3.7172 50 1 7.0585 0.8332 -4.5237 51 1 7.7870 1.0871 -2.9176 52 1 4.4004 -1.3686 -0.0104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981839343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:05 Heat of formation + Delta-G solvation = 91.848276 kcal Electronic energy + Delta-G solvation = -33012.336830 eV Core-core repulsion = 29015.191553 eV Total energy + Delta-G solvation = -3997.145278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.43833 -40.67231 -38.73412 -35.94983 -35.78021 -33.01623 -31.94772 -30.71985 -30.45113 -29.89921 -27.72483 -27.22281 -26.14297 -25.77356 -25.40463 -23.13055 -22.36931 -21.70257 -20.63874 -20.20460 -18.93001 -18.03016 -17.69883 -16.77844 -16.30551 -15.60220 -15.43846 -15.33949 -14.87140 -14.60075 -14.16583 -14.01596 -13.74586 -13.69051 -13.61511 -13.38439 -13.11443 -13.01201 -12.81672 -12.65888 -12.55687 -12.44093 -12.41046 -12.21673 -12.08539 -11.96022 -11.64164 -11.56948 -11.27794 -11.01425 -10.80622 -10.52226 -10.30379 -10.17580 -10.02872 -9.98786 -9.93531 -9.64137 -9.52009 -9.46600 -8.54517 -8.53809 -8.38946 -6.73002 -5.88264 -3.30963 1.98701 2.11539 2.76742 3.01565 3.06409 3.34172 3.43316 3.44726 4.01513 4.41660 4.50319 4.52778 4.53243 4.61432 4.73428 5.09498 5.15800 5.20891 5.24477 5.28994 5.31270 5.38866 5.41748 5.48274 5.51048 5.53727 5.60521 5.62122 5.65107 5.72514 5.77007 5.79460 5.89487 5.90100 5.94063 6.04428 6.12743 6.18830 6.23459 6.34907 6.43924 6.49496 6.66212 6.70142 6.77150 6.91333 7.08143 7.14694 7.42382 7.75750 7.79511 8.03856 8.07953 8.37298 9.12522 9.75944 10.33972 11.20738 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.003955 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.216599 B = 7077.626104 C = 8351.768631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.005 4.005 3 C -0.049 4.049 4 N -0.442 5.442 5 C 0.149 3.851 6 C -0.162 4.162 7 C -0.141 4.141 8 C 0.543 3.457 9 O -0.522 6.522 10 N -0.630 5.630 11 C 0.100 3.900 12 C -0.108 4.108 13 C 0.118 3.882 14 C -0.092 4.092 15 C -0.134 4.134 16 C 0.144 3.856 17 N -0.587 5.587 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.010 3.990 21 N -0.898 5.898 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.288 1.288 26 C 0.205 3.795 27 C 0.190 3.810 28 N -0.490 5.490 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.171 0.829 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.018 0.982 48 H 0.054 0.946 49 H 0.252 0.748 50 H 0.025 0.975 51 H 0.082 0.918 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.855 -3.213 4.294 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 C -0.182 4.182 4 N -0.126 5.126 5 C 0.062 3.938 6 C -0.220 4.220 7 C -0.199 4.199 8 C 0.329 3.671 9 O -0.397 6.397 10 N -0.364 5.364 11 C -0.024 4.024 12 C -0.110 4.110 13 C -0.003 4.003 14 C -0.130 4.130 15 C -0.173 4.173 16 C 0.017 3.983 17 N -0.309 5.309 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.189 4.189 21 N -0.542 5.542 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.078 3.922 27 C -0.093 4.093 28 N -0.209 5.209 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.188 0.812 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.036 0.964 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.043 0.957 51 H 0.100 0.900 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -14.516 -3.618 4.994 15.772 hybrid contribution 1.036 1.318 0.520 1.755 sum -13.481 -2.300 5.514 14.745 Atomic orbital electron populations 1.19981 0.87812 1.02349 1.02021 1.20700 0.96389 0.88528 1.07830 1.22309 0.82583 1.00407 1.12891 1.45573 1.05876 1.07337 1.53833 1.21112 0.81503 0.91296 0.99905 1.22336 1.04523 0.98554 0.96560 1.21991 1.03377 1.00332 0.94169 1.19465 0.86986 0.80218 0.80425 1.90756 1.43379 1.65415 1.40133 1.49555 1.30464 1.39599 1.16803 1.23413 0.96483 1.01181 0.81277 1.22749 0.94646 0.99821 0.93824 1.23046 0.95279 0.90350 0.91669 1.21220 0.97609 0.95682 0.98482 1.22020 0.95899 0.98662 1.00709 1.20909 0.97692 0.87909 0.91750 1.43966 1.02235 1.34486 1.50259 1.19134 0.88280 0.90701 1.40361 0.91747 1.25050 0.97691 0.95902 1.00268 1.70043 1.35378 1.02801 1.45961 0.86337 0.82259 0.78838 0.80057 1.20108 1.21656 1.21483 1.20331 0.84552 0.90099 0.97175 1.24896 0.96945 0.82052 1.05392 1.70214 1.00149 1.30345 1.20192 0.91566 0.91404 0.91599 0.81157 0.90285 0.89326 0.90704 0.91147 0.91017 0.89651 0.89886 0.90303 0.89257 0.90522 0.92896 0.91899 0.92870 0.92278 0.96377 0.92750 0.93765 0.95718 0.89975 0.78749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.42 36.00 0.38 -0.20 16 2 C -0.01 -0.07 7.09 -82.85 -0.59 -0.65 16 3 C -0.05 -0.56 10.53 -16.56 -0.17 -0.73 16 4 N -0.44 -5.60 2.61 -105.82 -0.28 -5.87 16 5 C 0.15 1.97 0.95 -132.97 -0.13 1.84 16 6 C -0.16 -1.95 8.22 37.16 0.31 -1.65 16 7 C -0.14 -1.68 7.96 37.16 0.30 -1.39 16 8 C 0.54 9.07 5.78 -10.99 -0.06 9.00 16 9 O -0.52 -10.58 16.72 5.56 0.09 -10.49 16 10 N -0.63 -9.98 2.49 -184.97 -0.46 -10.44 16 11 C 0.10 1.39 6.24 -8.04 -0.05 1.34 16 12 C -0.11 -1.75 0.96 -154.88 -0.15 -1.89 16 13 C 0.12 1.94 7.53 -8.20 -0.06 1.88 16 14 C -0.09 -1.30 5.11 -26.87 -0.14 -1.44 16 15 C -0.13 -2.05 6.03 -26.55 -0.16 -2.21 16 16 C 0.14 2.78 6.45 -3.75 -0.02 2.76 16 17 N -0.59 -13.64 2.98 -172.52 -0.51 -14.16 16 18 C -0.26 -6.72 9.54 -15.06 -0.14 -6.86 16 19 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 20 C 0.01 0.28 4.86 -17.43 -0.08 0.19 16 21 N -0.90 -25.04 11.53 55.49 0.64 -24.40 16 22 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.20 4.38 4.41 -3.86 -0.02 4.37 16 27 C 0.19 2.65 10.09 -90.38 -0.91 1.74 16 28 N -0.49 -7.19 11.25 -10.88 -0.12 -7.31 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.08 1.00 5.07 -51.93 -0.26 0.74 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.71 7.96 -51.93 -0.41 0.29 16 36 H 0.07 0.67 7.99 -51.93 -0.41 0.25 16 37 H 0.07 0.94 8.00 -51.93 -0.42 0.53 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.04 7.69 -51.93 -0.40 0.64 16 40 H 0.08 1.10 5.58 -51.93 -0.29 0.81 16 41 H 0.09 1.77 8.11 -51.93 -0.42 1.35 16 42 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 43 H 0.05 0.64 8.10 -51.92 -0.42 0.22 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.94 8.02 -51.93 -0.42 0.53 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 49 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 50 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.08 2.04 6.27 -51.93 -0.33 1.71 16 52 H 0.20 2.71 6.88 -52.49 -0.36 2.35 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -31.26 403.89 -10.05 -41.30 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.75 Total: 2.58 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -1.72 Total: 6.08 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.73 Total: -62.18 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.26 -10.05 -41.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981839343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.151 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds