Wall clock time and date at job start Wed Apr 1 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.89570 * 2 1 4 4 N 1.40087 * 108.20604 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.03717 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92154 * 359.75165 * 4 3 2 7 7 C 1.50704 * 126.12727 * 180.23655 * 6 4 3 8 8 C 1.35319 * 107.74821 * 0.39822 * 6 4 3 9 9 C 1.50702 * 126.03933 * 179.87196 * 8 6 4 10 10 H 1.08997 * 109.47097 * 359.70745 * 9 8 6 11 11 C 1.52996 * 109.47235 * 119.71162 * 9 8 6 12 12 C 1.50704 * 109.46907 * 239.71064 * 9 8 6 13 13 O 1.21282 * 119.99655 * 0.02562 * 12 9 8 14 14 N 1.34771 * 119.99815 * 179.97438 * 12 9 8 15 15 C 1.47677 * 134.45047 * 179.97438 * 14 12 9 16 16 C 1.53444 * 85.96941 * 155.71345 * 15 14 12 17 17 C 1.47665 * 134.45637 * 0.02562 * 14 12 9 18 18 C 1.52628 * 113.71744 * 268.85066 * 16 15 14 19 19 C 1.53186 * 109.35647 * 171.27591 * 18 16 15 20 20 C 1.52669 * 109.42823 * 58.92861 * 19 18 16 21 21 N 1.46895 * 109.34484 * 303.77394 * 20 19 18 22 22 C 1.36941 * 120.68886 * 235.30832 * 21 20 19 23 23 H 1.07999 * 120.00331 * 151.85862 * 22 21 20 24 24 C 1.38812 * 120.00065 * 331.87001 * 22 21 20 25 25 N 1.31627 * 119.99737 * 335.04228 * 24 22 21 26 26 Si 1.86800 * 120.00421 * 155.04594 * 24 22 21 27 27 H 1.48499 * 109.46785 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47247 * 119.99720 * 26 24 22 29 29 H 1.48498 * 109.47104 * 239.99637 * 26 24 22 30 30 C 1.47110 * 118.62431 * 55.03629 * 21 20 19 31 31 H 1.09000 * 109.46676 * 270.02268 * 1 2 3 32 32 H 1.09000 * 109.47357 * 30.02479 * 1 2 3 33 33 H 1.09005 * 109.46876 * 150.02574 * 1 2 3 34 34 H 1.08996 * 109.47198 * 270.18857 * 7 6 4 35 35 H 1.09004 * 109.46920 * 30.18633 * 7 6 4 36 36 H 1.09000 * 109.46786 * 150.18235 * 7 6 4 37 37 H 1.08992 * 109.47298 * 179.97438 * 11 9 8 38 38 H 1.09008 * 109.46986 * 299.99674 * 11 9 8 39 39 H 1.08999 * 109.46910 * 59.99730 * 11 9 8 40 40 H 1.08997 * 113.79514 * 41.45269 * 15 14 12 41 41 H 1.08997 * 113.89758 * 269.98928 * 15 14 12 42 42 H 1.09002 * 113.79643 * 90.02067 * 17 14 12 43 43 H 1.09000 * 113.79467 * 318.54909 * 17 14 12 44 44 H 1.09002 * 109.49357 * 291.24383 * 18 16 15 45 45 H 1.09005 * 109.49027 * 51.31330 * 18 16 15 46 46 H 1.08998 * 109.49150 * 179.03004 * 19 18 16 47 47 H 1.09005 * 109.48818 * 299.09987 * 19 18 16 48 48 H 1.08998 * 109.43757 * 183.78551 * 20 19 18 49 49 H 1.09004 * 109.36592 * 63.70916 * 20 19 18 50 50 H 0.96996 * 119.99632 * 354.27097 * 25 24 22 51 51 H 1.09002 * 109.63459 * 68.57930 * 30 21 20 52 52 H 1.09000 * 109.64288 * 189.19161 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 1 4.3908 1.2081 0.0011 6 6 3.6142 -0.7152 0.0065 7 6 4.8351 -1.5988 0.0143 8 6 2.3271 -1.1330 0.0006 9 6 1.8600 -2.5658 0.0014 10 1 2.7244 -3.2297 0.0022 11 6 1.0155 -2.8262 1.2503 12 6 1.0295 -2.8239 -1.2294 13 8 0.8364 -1.9323 -2.0286 14 7 0.5022 -4.0458 -1.4424 15 6 -0.3355 -4.6400 -2.5035 16 6 0.2559 -5.9867 -2.0662 17 6 0.5298 -5.3265 -0.7078 18 6 1.5211 -6.3771 -2.8252 19 6 2.1451 -7.6133 -2.1703 20 6 1.1377 -8.7604 -2.1881 21 7 -0.0994 -8.3320 -1.5219 22 6 -0.6123 -9.0477 -0.4731 23 1 -1.2028 -8.5508 0.2824 24 6 -0.3732 -10.4120 -0.3809 25 7 -0.1087 -11.1086 -1.4659 26 14 -0.4267 -11.2593 1.2830 27 1 -0.7419 -10.2615 2.3367 28 1 -1.4735 -12.3124 1.2688 29 1 0.8935 -11.8775 1.5664 30 6 -0.7726 -7.1148 -2.0008 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8897 -0.5142 33 1 -0.3633 -0.8903 -0.5135 34 1 5.1346 -1.8136 -1.0115 35 1 5.6486 -1.0899 0.5314 36 1 4.6049 -2.5318 0.5286 37 1 0.6773 -3.8623 1.2506 38 1 1.6163 -2.6395 2.1405 39 1 0.1512 -2.1622 1.2494 40 1 -0.0476 -4.3398 -3.5110 41 1 -1.4066 -4.5505 -2.3225 42 1 -0.2838 -5.4403 0.0085 43 1 1.5055 -5.5718 -0.2882 44 1 1.2686 -6.6027 -3.8613 45 1 2.2324 -5.5517 -2.7954 46 1 3.0395 -7.9044 -2.7211 47 1 2.4116 -7.3829 -1.1388 48 1 1.5563 -9.6189 -1.6628 49 1 0.9198 -9.0341 -3.2205 50 1 -0.1625 -10.6871 -2.3379 51 1 -1.1860 -7.2915 -2.9938 52 1 -1.5716 -6.8426 -1.3112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982071772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:52 Heat of formation + Delta-G solvation = 81.687929 kcal Electronic energy + Delta-G solvation = -31986.558030 eV Core-core repulsion = 27988.972167 eV Total energy + Delta-G solvation = -3997.585864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.64146 -40.55604 -38.37152 -36.03804 -34.37486 -33.48447 -32.82034 -30.92844 -30.51896 -29.51519 -28.12893 -26.97146 -26.10726 -26.05664 -25.20982 -23.80441 -22.36973 -20.87281 -20.29878 -19.85485 -18.72343 -17.94895 -17.42337 -17.36311 -16.61451 -15.69656 -15.64255 -15.09535 -14.75641 -14.44387 -14.13015 -13.90106 -13.80477 -13.64093 -13.50636 -13.43553 -13.22427 -13.07924 -12.93827 -12.67162 -12.52375 -12.41265 -12.38056 -12.11106 -11.96609 -11.77737 -11.63325 -11.47378 -11.32700 -11.02967 -10.73410 -10.48138 -10.44811 -10.22625 -10.13095 -10.02507 -9.81916 -9.46923 -9.30129 -9.28903 -8.50729 -8.47748 -8.37391 -6.91498 -6.10235 -3.27623 1.72214 2.55994 2.71625 2.78994 3.11128 3.48403 3.50530 3.63515 4.40397 4.44284 4.51177 4.56297 4.66545 4.80208 4.94630 5.01514 5.10529 5.13046 5.20302 5.25972 5.28956 5.30932 5.46622 5.51714 5.55130 5.58687 5.59639 5.61221 5.68892 5.71622 5.74939 5.80672 5.88274 5.94503 5.96352 6.00556 6.04856 6.10241 6.16567 6.29787 6.39766 6.45125 6.56989 6.60101 6.64647 6.70495 7.04281 7.16149 7.17294 7.61553 7.89974 7.96061 8.34533 8.53933 9.06861 9.80194 10.24985 11.18118 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.002679 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.070061 B =10447.682934 C =10618.073393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.114 3.886 3 N -0.303 5.303 4 N -0.480 5.480 5 H 0.436 0.564 6 C 0.092 3.908 7 C -0.095 4.095 8 C -0.212 4.212 9 C -0.024 4.024 10 H 0.097 0.903 11 C -0.144 4.144 12 C 0.537 3.463 13 O -0.539 6.539 14 N -0.640 5.640 15 C 0.114 3.886 16 C -0.103 4.103 17 C 0.123 3.877 18 C -0.082 4.082 19 C -0.135 4.135 20 C 0.148 3.852 21 N -0.595 5.595 22 C -0.348 4.348 23 H 0.057 0.943 24 C -0.023 4.023 25 N -0.916 5.916 26 Si 1.067 2.933 27 H -0.292 1.292 28 H -0.295 1.295 29 H -0.291 1.291 30 C 0.164 3.836 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.015 0.985 50 H 0.270 0.730 51 H 0.021 0.979 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.319 17.523 3.468 19.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 N -0.126 5.126 4 N -0.187 5.187 5 H 0.279 0.721 6 C -0.037 4.037 7 C -0.154 4.154 8 C -0.223 4.223 9 C -0.047 4.047 10 H 0.115 0.885 11 C -0.202 4.202 12 C 0.327 3.673 13 O -0.417 6.417 14 N -0.375 5.375 15 C -0.009 4.009 16 C -0.105 4.105 17 C 0.000 4.000 18 C -0.120 4.120 19 C -0.175 4.175 20 C 0.022 3.978 21 N -0.319 5.319 22 C -0.477 4.477 23 H 0.074 0.926 24 C -0.225 4.225 25 N -0.556 5.556 26 Si 0.897 3.103 27 H -0.218 1.218 28 H -0.222 1.222 29 H -0.217 1.217 30 C 0.037 3.963 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.033 0.967 50 H 0.081 0.919 51 H 0.039 0.961 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.546 18.006 3.887 19.906 hybrid contribution 0.224 0.971 -0.823 1.293 sum 7.770 18.977 3.064 20.734 Atomic orbital electron populations 1.20316 0.87026 1.04105 1.02087 1.22018 0.96781 0.89772 0.96701 1.77269 0.86326 1.22282 1.26748 1.46041 1.07348 1.04576 1.60770 0.72084 1.20788 0.96651 0.85132 1.01124 1.20500 0.92838 0.98436 1.03605 1.19088 0.91213 0.94658 1.17370 1.19423 0.98554 0.92950 0.93757 0.88529 1.21852 0.99986 1.02472 0.95876 1.20231 0.79906 0.80127 0.87059 1.90679 1.61091 1.42773 1.47135 1.50173 1.51326 1.09623 1.26419 1.23190 0.95355 0.89822 0.92487 1.22590 0.98274 0.94585 0.95065 1.23232 1.02231 0.78611 0.95892 1.21101 0.94716 0.97646 0.98534 1.21989 0.98615 0.96811 1.00041 1.20840 0.86093 0.95325 0.95517 1.44094 1.22918 1.26809 1.38059 1.19972 1.35303 0.91723 1.00702 0.92559 1.25806 0.99550 0.92958 1.04223 1.70720 1.48589 1.37761 0.98545 0.83505 0.76623 0.75291 0.74879 1.21796 1.22182 1.21727 1.20779 0.92066 0.86124 0.97363 0.90991 0.91153 0.89717 0.90029 0.90974 0.89435 0.91441 0.91582 0.91887 0.90603 0.89914 0.89502 0.90299 0.92183 0.93118 0.92955 0.92353 0.90176 0.96675 0.91893 0.96079 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 8.57 36.01 0.31 -0.63 16 2 C 0.11 1.58 6.53 -82.41 -0.54 1.04 16 3 N -0.30 -4.22 12.70 33.67 0.43 -3.80 16 4 N -0.48 -5.19 7.36 33.48 0.25 -4.95 16 5 H 0.44 3.18 8.96 -182.61 -1.64 1.54 16 6 C 0.09 0.99 7.21 -82.26 -0.59 0.39 16 7 C -0.10 -0.67 10.06 36.01 0.36 -0.31 16 8 C -0.21 -2.69 4.36 -105.05 -0.46 -3.15 16 9 C -0.02 -0.29 2.71 -92.92 -0.25 -0.54 16 10 H 0.10 1.02 6.79 -51.93 -0.35 0.66 16 11 C -0.14 -1.49 8.93 37.16 0.33 -1.15 16 12 C 0.54 7.81 6.42 -10.99 -0.07 7.74 16 13 O -0.54 -9.58 14.60 5.56 0.08 -9.50 16 14 N -0.64 -8.83 3.41 -180.46 -0.62 -9.45 16 15 C 0.11 1.57 7.97 -3.18 -0.03 1.55 16 16 C -0.10 -1.54 0.87 -154.42 -0.13 -1.68 16 17 C 0.12 1.68 5.86 -3.16 -0.02 1.67 16 18 C -0.08 -1.25 5.03 -26.83 -0.13 -1.38 16 19 C -0.14 -2.29 5.99 -26.80 -0.16 -2.45 16 20 C 0.15 3.18 4.62 -4.00 -0.02 3.16 16 21 N -0.60 -13.41 2.86 -172.75 -0.49 -13.90 16 22 C -0.35 -8.91 9.50 -15.06 -0.14 -9.06 16 23 H 0.06 1.45 7.94 -52.49 -0.42 1.03 16 24 C -0.02 -0.62 4.69 -17.43 -0.08 -0.70 16 25 N -0.92 -26.18 12.39 55.49 0.69 -25.49 16 26 Si 1.07 24.02 29.99 -169.99 -5.10 18.92 16 27 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 C 0.16 3.02 5.71 -3.81 -0.02 3.00 16 31 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.14 5.30 -51.93 -0.28 0.86 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.56 7.14 -51.93 -0.37 0.19 16 37 H 0.07 0.69 6.12 -51.93 -0.32 0.37 16 38 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.06 0.66 6.15 -51.93 -0.32 0.34 16 40 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 41 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 42 H 0.09 1.19 7.79 -51.93 -0.40 0.79 16 43 H 0.08 1.06 7.37 -51.93 -0.38 0.68 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.73 8.02 -51.93 -0.42 0.32 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.06 1.00 7.37 -51.93 -0.38 0.62 16 48 H 0.08 1.97 6.23 -51.93 -0.32 1.64 16 49 H 0.02 0.34 7.94 -51.93 -0.41 -0.08 16 50 H 0.27 7.78 6.77 -40.82 -0.28 7.50 16 51 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.06 1.08 7.78 -51.93 -0.40 0.68 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -32.55 398.43 -10.11 -42.66 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -9.70 Total: 2.02 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.65 Total: -2.51 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.25 Total: -57.59 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.10 Total: 18.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.55 -10.11 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982071772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.348 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds