Wall clock time and date at job start Wed Apr 1 2020 03:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.89570 * 2 1 4 4 N 1.40087 * 108.20604 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.03717 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92154 * 359.75165 * 4 3 2 7 7 C 1.50704 * 126.12727 * 180.23655 * 6 4 3 8 8 C 1.35319 * 107.74821 * 0.39822 * 6 4 3 9 9 C 1.50702 * 126.03933 * 179.87196 * 8 6 4 10 10 H 1.08997 * 109.47097 * 359.70745 * 9 8 6 11 11 C 1.52996 * 109.47235 * 119.71162 * 9 8 6 12 12 C 1.50704 * 109.46907 * 239.71064 * 9 8 6 13 13 O 1.21282 * 119.99655 * 0.02562 * 12 9 8 14 14 N 1.34771 * 119.99815 * 179.97438 * 12 9 8 15 15 C 1.47677 * 134.45047 * 179.97438 * 14 12 9 16 16 C 1.53444 * 85.96941 * 155.71345 * 15 14 12 17 17 C 1.47665 * 134.45637 * 0.02562 * 14 12 9 18 18 C 1.52628 * 113.71744 * 268.85066 * 16 15 14 19 19 C 1.53186 * 109.35647 * 171.27591 * 18 16 15 20 20 C 1.52669 * 109.42823 * 58.92861 * 19 18 16 21 21 N 1.46895 * 109.34484 * 303.77394 * 20 19 18 22 22 C 1.36941 * 120.68886 * 235.30832 * 21 20 19 23 23 H 1.07999 * 120.00331 * 151.85862 * 22 21 20 24 24 C 1.38812 * 120.00065 * 331.87001 * 22 21 20 25 25 N 1.31627 * 119.99737 * 335.04228 * 24 22 21 26 26 Si 1.86800 * 120.00421 * 155.04594 * 24 22 21 27 27 H 1.48499 * 109.46785 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47247 * 119.99720 * 26 24 22 29 29 H 1.48498 * 109.47104 * 239.99637 * 26 24 22 30 30 C 1.47110 * 118.62431 * 55.03629 * 21 20 19 31 31 H 1.09000 * 109.46676 * 270.02268 * 1 2 3 32 32 H 1.09000 * 109.47357 * 30.02479 * 1 2 3 33 33 H 1.09005 * 109.46876 * 150.02574 * 1 2 3 34 34 H 1.08996 * 109.47198 * 270.18857 * 7 6 4 35 35 H 1.09004 * 109.46920 * 30.18633 * 7 6 4 36 36 H 1.09000 * 109.46786 * 150.18235 * 7 6 4 37 37 H 1.08992 * 109.47298 * 179.97438 * 11 9 8 38 38 H 1.09008 * 109.46986 * 299.99674 * 11 9 8 39 39 H 1.08999 * 109.46910 * 59.99730 * 11 9 8 40 40 H 1.08997 * 113.79514 * 41.45269 * 15 14 12 41 41 H 1.08997 * 113.89758 * 269.98928 * 15 14 12 42 42 H 1.09002 * 113.79643 * 90.02067 * 17 14 12 43 43 H 1.09000 * 113.79467 * 318.54909 * 17 14 12 44 44 H 1.09002 * 109.49357 * 291.24383 * 18 16 15 45 45 H 1.09005 * 109.49027 * 51.31330 * 18 16 15 46 46 H 1.08998 * 109.49150 * 179.03004 * 19 18 16 47 47 H 1.09005 * 109.48818 * 299.09987 * 19 18 16 48 48 H 1.08998 * 109.43757 * 183.78551 * 20 19 18 49 49 H 1.09004 * 109.36592 * 63.70916 * 20 19 18 50 50 H 0.96996 * 119.99632 * 354.27097 * 25 24 22 51 51 H 1.09002 * 109.63459 * 68.57930 * 30 21 20 52 52 H 1.09000 * 109.64288 * 189.19161 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 1 4.3908 1.2081 0.0011 6 6 3.6142 -0.7152 0.0065 7 6 4.8351 -1.5988 0.0143 8 6 2.3271 -1.1330 0.0006 9 6 1.8600 -2.5658 0.0014 10 1 2.7244 -3.2297 0.0022 11 6 1.0155 -2.8262 1.2503 12 6 1.0295 -2.8239 -1.2294 13 8 0.8364 -1.9323 -2.0286 14 7 0.5022 -4.0458 -1.4424 15 6 -0.3355 -4.6400 -2.5035 16 6 0.2559 -5.9867 -2.0662 17 6 0.5298 -5.3265 -0.7078 18 6 1.5211 -6.3771 -2.8252 19 6 2.1451 -7.6133 -2.1703 20 6 1.1377 -8.7604 -2.1881 21 7 -0.0994 -8.3320 -1.5219 22 6 -0.6123 -9.0477 -0.4731 23 1 -1.2028 -8.5508 0.2824 24 6 -0.3732 -10.4120 -0.3809 25 7 -0.1087 -11.1086 -1.4659 26 14 -0.4267 -11.2593 1.2830 27 1 -0.7419 -10.2615 2.3367 28 1 -1.4735 -12.3124 1.2688 29 1 0.8935 -11.8775 1.5664 30 6 -0.7726 -7.1148 -2.0008 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8897 -0.5142 33 1 -0.3633 -0.8903 -0.5135 34 1 5.1346 -1.8136 -1.0115 35 1 5.6486 -1.0899 0.5314 36 1 4.6049 -2.5318 0.5286 37 1 0.6773 -3.8623 1.2506 38 1 1.6163 -2.6395 2.1405 39 1 0.1512 -2.1622 1.2494 40 1 -0.0476 -4.3398 -3.5110 41 1 -1.4066 -4.5505 -2.3225 42 1 -0.2838 -5.4403 0.0085 43 1 1.5055 -5.5718 -0.2882 44 1 1.2686 -6.6027 -3.8613 45 1 2.2324 -5.5517 -2.7954 46 1 3.0395 -7.9044 -2.7211 47 1 2.4116 -7.3829 -1.1388 48 1 1.5563 -9.6189 -1.6628 49 1 0.9198 -9.0341 -3.2205 50 1 -0.1625 -10.6871 -2.3379 51 1 -1.1860 -7.2915 -2.9938 52 1 -1.5716 -6.8426 -1.3112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982071772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:51 Heat of formation + Delta-G solvation = 62.081203 kcal Electronic energy + Delta-G solvation = -31987.408242 eV Core-core repulsion = 27988.972167 eV Total energy + Delta-G solvation = -3998.436075 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53799 -41.72832 -39.59889 -37.59801 -35.32667 -34.50527 -34.27172 -32.34151 -31.75236 -30.73549 -29.02106 -27.75780 -27.34316 -27.20459 -26.98862 -24.76344 -23.96918 -22.34752 -21.17986 -20.94104 -19.76431 -19.27564 -19.17966 -18.35013 -17.64638 -16.87384 -16.65090 -16.23828 -15.97423 -15.83452 -15.67473 -15.37079 -14.90014 -14.84377 -14.69683 -14.60907 -14.15690 -14.10486 -13.88538 -13.72836 -13.55441 -13.43826 -13.35499 -13.19330 -13.07782 -13.01187 -12.79934 -12.64715 -12.49731 -12.44071 -12.25438 -11.91847 -11.81852 -11.72738 -11.56816 -11.36879 -11.27640 -10.98763 -10.63861 -10.34446 -10.18945 -9.61911 -9.35997 -8.81493 -8.13582 -5.29590 0.87998 1.58769 1.66245 1.69600 1.72656 1.87944 1.95708 2.06465 2.72533 3.23782 3.37165 3.53784 3.63700 3.73039 3.73254 3.82933 4.00973 4.14475 4.18803 4.21824 4.27417 4.33008 4.37405 4.48682 4.51912 4.56480 4.63757 4.66100 4.69606 4.70756 4.74505 4.77278 4.84007 4.88916 4.93581 4.94047 5.01105 5.06621 5.09486 5.10320 5.15348 5.20807 5.27091 5.29983 5.31801 5.41529 5.56026 5.69701 5.95581 6.44860 6.49226 6.73202 6.79471 7.14814 7.24267 7.87478 8.32905 9.11181 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.002679 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.070061 B =10447.682934 C =10618.073393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.096 3.904 3 N -0.337 5.337 4 N -0.472 5.472 5 H 0.449 0.551 6 C 0.101 3.899 7 C -0.095 4.095 8 C -0.239 4.239 9 C -0.017 4.017 10 H 0.114 0.886 11 C -0.140 4.140 12 C 0.537 3.463 13 O -0.575 6.575 14 N -0.636 5.636 15 C 0.117 3.883 16 C -0.098 4.098 17 C 0.131 3.869 18 C -0.075 4.075 19 C -0.122 4.122 20 C 0.154 3.846 21 N -0.610 5.610 22 C -0.341 4.341 23 H 0.057 0.943 24 C -0.078 4.078 25 N -0.949 5.949 26 Si 1.113 2.887 27 H -0.269 1.269 28 H -0.299 1.299 29 H -0.291 1.291 30 C 0.164 3.836 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.044 0.956 49 H -0.002 1.002 50 H 0.254 0.746 51 H 0.014 0.986 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.811 18.677 4.893 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 N -0.162 5.162 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.029 4.029 7 C -0.153 4.153 8 C -0.250 4.250 9 C -0.039 4.039 10 H 0.132 0.868 11 C -0.197 4.197 12 C 0.328 3.672 13 O -0.455 6.455 14 N -0.370 5.370 15 C -0.006 4.006 16 C -0.101 4.101 17 C 0.009 3.991 18 C -0.113 4.113 19 C -0.161 4.161 20 C 0.028 3.972 21 N -0.334 5.334 22 C -0.471 4.471 23 H 0.074 0.926 24 C -0.274 4.274 25 N -0.591 5.591 26 Si 0.939 3.061 27 H -0.193 1.193 28 H -0.227 1.227 29 H -0.218 1.218 30 C 0.038 3.962 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.016 0.984 50 H 0.064 0.936 51 H 0.032 0.968 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.042 19.204 5.316 21.882 hybrid contribution -0.258 0.669 -1.336 1.516 sum 8.784 19.873 3.980 22.089 Atomic orbital electron populations 1.20279 0.86786 1.03144 1.02930 1.22289 0.97379 0.90405 0.96956 1.77187 0.87724 1.23058 1.28185 1.46093 1.06999 1.05136 1.59966 0.70465 1.21358 0.97438 0.85248 0.98829 1.20659 0.91854 0.98325 1.04440 1.19303 0.91941 0.94780 1.19025 1.19419 0.98762 0.92955 0.92738 0.86774 1.21832 0.99829 1.02348 0.95736 1.20739 0.79588 0.79514 0.87402 1.90668 1.62417 1.43791 1.48594 1.50131 1.51066 1.09614 1.26218 1.23173 0.96020 0.88669 0.92714 1.22413 0.97386 0.93703 0.96561 1.23189 1.02905 0.77982 0.95058 1.21039 0.94857 0.97151 0.98216 1.21821 0.97847 0.95605 1.00840 1.20699 0.86798 0.95978 0.93724 1.44302 1.23756 1.27567 1.37825 1.20227 1.33947 0.91824 1.01079 0.92562 1.27014 0.99933 0.94235 1.06182 1.70844 1.51759 1.38105 0.98441 0.82878 0.76265 0.74804 0.72152 1.19332 1.22663 1.21779 1.20853 0.92973 0.85658 0.96685 0.89233 0.91569 0.91067 0.89481 0.88510 0.88384 0.91263 0.90171 0.92464 0.90540 0.88908 0.89208 0.89299 0.92292 0.91387 0.91177 0.92025 0.93748 0.98368 0.93583 0.96821 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.76 8.57 71.24 0.61 -1.15 16 2 C 0.10 2.57 6.53 43.10 0.28 2.85 16 3 N -0.34 -9.17 12.70 -47.39 -0.60 -9.77 16 4 N -0.47 -9.42 7.36 -48.00 -0.35 -9.77 16 5 H 0.45 5.70 8.96 -213.33 -1.91 3.79 16 6 C 0.10 1.93 7.21 41.41 0.30 2.23 16 7 C -0.09 -0.98 10.06 71.24 0.72 -0.27 16 8 C -0.24 -5.64 4.36 -20.14 -0.09 -5.73 16 9 C -0.02 -0.35 2.71 -12.29 -0.03 -0.39 16 10 H 0.11 1.99 6.79 -2.39 -0.02 1.98 16 11 C -0.14 -2.54 8.93 71.98 0.64 -1.89 16 12 C 0.54 14.60 6.42 87.66 0.56 15.17 16 13 O -0.57 -19.90 14.60 -3.04 -0.04 -19.95 16 14 N -0.64 -16.11 3.41 -843.24 -2.88 -18.98 16 15 C 0.12 3.00 7.97 86.30 0.69 3.69 16 16 C -0.10 -2.77 0.87 -52.02 -0.05 -2.81 16 17 C 0.13 3.25 5.86 86.32 0.51 3.75 16 18 C -0.08 -2.11 5.03 30.53 0.15 -1.95 16 19 C -0.12 -3.93 5.99 30.55 0.18 -3.75 16 20 C 0.15 6.65 4.62 86.19 0.40 7.04 16 21 N -0.61 -27.42 2.86 -700.46 -2.00 -29.43 16 22 C -0.34 -17.41 9.50 84.03 0.80 -16.61 16 23 H 0.06 2.84 7.94 -2.91 -0.02 2.81 16 24 C -0.08 -4.16 4.69 84.86 0.40 -3.76 16 25 N -0.95 -55.65 12.39 21.65 0.27 -55.38 16 26 Si 1.11 48.38 29.99 68.60 2.06 50.44 16 27 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 28 H -0.30 -13.13 7.11 99.48 0.71 -12.43 16 29 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 30 C 0.16 5.93 5.71 86.20 0.49 6.42 16 31 H 0.09 1.74 7.92 -2.39 -0.02 1.72 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.90 5.30 -2.38 -0.01 1.89 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.54 8.14 -2.38 -0.02 0.53 16 36 H 0.10 0.85 7.14 -2.39 -0.02 0.83 16 37 H 0.07 1.22 6.12 -2.39 -0.01 1.20 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.06 1.10 6.15 -2.39 -0.01 1.08 16 40 H 0.08 1.98 8.09 -2.39 -0.02 1.96 16 41 H 0.09 2.21 8.09 -2.39 -0.02 2.19 16 42 H 0.09 2.23 7.79 -2.39 -0.02 2.21 16 43 H 0.09 2.08 7.37 -2.39 -0.02 2.06 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.07 1.73 8.02 -2.38 -0.02 1.71 16 46 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.06 1.96 7.37 -2.38 -0.02 1.94 16 48 H 0.04 2.23 6.23 -2.39 -0.01 2.22 16 49 H 0.00 -0.08 7.94 -2.38 -0.02 -0.10 16 50 H 0.25 15.23 6.77 -92.71 -0.63 14.60 16 51 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 52 H 0.06 2.13 7.78 -2.39 -0.02 2.11 16 Total: -1.00 -71.74 398.43 2.18 -69.56 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.84 Total: 20.43 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 6.56 Total: 2.85 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -5.57 Total: -123.33 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.04 Total: -19.95 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.06 Total: 50.44 kcal Total: -71.74 2.18 -69.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982071772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.643 kcal (2) G-P(sol) polarization free energy of solvation -71.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds