Wall clock time and date at job start Wed Apr 1 2020 03:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30839 * 125.90199 * 2 1 4 4 N 1.40075 * 108.20892 * 180.26239 * 3 2 1 5 5 H 0.97001 * 126.04112 * 179.74173 * 4 3 2 6 6 C 1.34950 * 107.92679 * 359.72216 * 4 3 2 7 7 C 1.50703 * 126.13018 * 179.97438 * 6 4 3 8 8 C 1.35320 * 107.74529 * 0.02562 * 6 4 3 9 9 C 1.50697 * 126.04270 * 179.97438 * 8 6 4 10 10 H 1.09001 * 109.47282 * 4.07433 * 9 8 6 11 11 C 1.53007 * 109.47117 * 244.07201 * 9 8 6 12 12 C 1.50704 * 109.47293 * 124.07373 * 9 8 6 13 13 O 1.21285 * 119.99748 * 6.61657 * 12 9 8 14 14 N 1.34768 * 120.00215 * 186.61694 * 12 9 8 15 15 C 1.47677 * 134.45312 * 355.60846 * 14 12 9 16 16 C 1.53446 * 85.97251 * 155.70949 * 15 14 12 17 17 C 1.47668 * 134.45448 * 175.60302 * 14 12 9 18 18 C 1.52632 * 113.71279 * 268.84675 * 16 15 14 19 19 C 1.53181 * 109.35309 * 171.27448 * 18 16 15 20 20 C 1.52666 * 109.42841 * 58.93039 * 19 18 16 21 21 N 1.46892 * 109.34731 * 303.77152 * 20 19 18 22 22 C 1.36937 * 120.68962 * 235.31105 * 21 20 19 23 23 H 1.08001 * 120.00140 * 145.77368 * 22 21 20 24 24 C 1.38810 * 119.99826 * 325.76724 * 22 21 20 25 25 N 1.31610 * 120.00451 * 336.93170 * 24 22 21 26 26 Si 1.86806 * 119.99884 * 156.92739 * 24 22 21 27 27 H 1.48497 * 109.47236 * 90.00115 * 26 24 22 28 28 H 1.48502 * 109.47298 * 210.00463 * 26 24 22 29 29 H 1.48506 * 109.47087 * 330.00302 * 26 24 22 30 30 C 1.47114 * 118.62127 * 55.03666 * 21 20 19 31 31 H 1.09001 * 109.46927 * 274.72169 * 1 2 3 32 32 H 1.09005 * 109.47169 * 34.72065 * 1 2 3 33 33 H 1.09002 * 109.47510 * 154.72577 * 1 2 3 34 34 H 1.08994 * 109.46969 * 270.02378 * 7 6 4 35 35 H 1.08990 * 109.47081 * 30.02478 * 7 6 4 36 36 H 1.09003 * 109.47116 * 150.02671 * 7 6 4 37 37 H 1.08999 * 109.46655 * 304.95660 * 11 9 8 38 38 H 1.08992 * 109.46751 * 64.95687 * 11 9 8 39 39 H 1.08997 * 109.46745 * 184.95707 * 11 9 8 40 40 H 1.08996 * 113.79494 * 41.44188 * 15 14 12 41 41 H 1.09004 * 113.79188 * 269.96906 * 15 14 12 42 42 H 1.08998 * 113.79722 * 90.02828 * 17 14 12 43 43 H 1.08998 * 113.79685 * 318.55065 * 17 14 12 44 44 H 1.08997 * 109.49547 * 291.24316 * 18 16 15 45 45 H 1.09001 * 109.49022 * 51.31160 * 18 16 15 46 46 H 1.09007 * 109.49029 * 179.02550 * 19 18 16 47 47 H 1.08995 * 109.49248 * 299.09722 * 19 18 16 48 48 H 1.08997 * 109.44502 * 183.77920 * 20 19 18 49 49 H 1.09007 * 109.36790 * 63.71023 * 20 19 18 50 50 H 0.97003 * 119.99955 * 357.84343 * 25 24 22 51 51 H 1.09004 * 109.64097 * 68.58218 * 30 21 20 52 52 H 1.09007 * 109.64118 * 189.19329 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0061 5 1 4.3908 1.2079 -0.0110 6 6 3.6142 -0.7154 -0.0035 7 6 4.8350 -1.5990 -0.0087 8 6 2.3271 -1.1331 0.0034 9 6 1.8599 -2.5658 0.0078 10 1 2.7221 -3.2289 0.0776 11 6 1.0958 -2.8570 -1.2854 12 6 0.9530 -2.7948 1.1895 13 8 0.6137 -1.8599 1.8836 14 7 0.5192 -4.0384 1.4750 15 6 0.6568 -5.3566 0.8238 16 6 0.4158 -5.9499 2.2182 17 6 -0.2841 -4.6288 2.5643 18 6 1.6968 -6.1916 3.0122 19 6 1.3374 -6.5737 4.4514 20 6 0.4714 -7.8309 4.4419 21 7 -0.7144 -7.5986 3.6065 22 6 -1.9731 -7.7843 4.1126 23 1 -2.7850 -7.1508 3.7870 24 6 -2.2057 -8.7869 5.0441 25 7 -1.3952 -9.8214 5.1138 26 14 -3.6693 -8.6677 6.1988 27 1 -4.8481 -9.3185 5.5728 28 1 -3.3478 -9.3506 7.4777 29 1 -3.9755 -7.2389 6.4640 30 6 -0.5216 -7.1565 2.2167 31 1 -0.3633 0.0846 1.0242 32 1 -0.3634 0.8447 -0.5854 33 1 -0.3634 -0.9293 -0.4388 34 1 5.1238 -1.8136 -1.0375 35 1 5.6538 -1.0903 0.4999 36 1 4.6103 -2.5322 0.5078 37 1 0.2857 -2.1366 -1.3988 38 1 1.7746 -2.7770 -2.1343 39 1 0.6827 -3.8648 -1.2441 40 1 1.6544 -5.5505 0.4298 41 1 -0.1353 -5.5786 0.1086 42 1 -1.3560 -4.6343 2.3671 43 1 -0.0339 -4.2446 3.5532 44 1 2.2630 -7.0011 2.5516 45 1 2.2988 -5.2829 3.0167 46 1 2.2504 -6.7637 5.0160 47 1 0.7846 -5.7579 4.9171 48 1 0.1599 -8.0646 5.4600 49 1 1.0464 -8.6629 4.0354 50 1 -0.6533 -9.8990 4.4936 51 1 -0.0786 -7.9639 1.6335 52 1 -1.4820 -6.8737 1.7856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982071773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:55 Heat of formation + Delta-G solvation = 81.712795 kcal Electronic energy + Delta-G solvation = -31847.858014 eV Core-core repulsion = 27850.273229 eV Total energy + Delta-G solvation = -3997.584785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.65410 -40.53535 -38.35194 -36.00639 -34.38636 -33.49611 -32.80440 -30.88873 -30.49206 -29.55514 -28.14116 -27.00460 -26.23154 -25.94895 -25.15472 -23.83335 -22.35107 -20.84917 -20.30224 -19.93628 -18.71541 -17.89037 -17.45611 -17.29739 -16.61922 -15.71897 -15.66100 -15.13663 -14.70697 -14.44846 -14.10228 -13.85393 -13.82023 -13.68393 -13.52179 -13.49162 -13.21820 -13.11304 -12.98144 -12.69226 -12.54998 -12.35527 -12.33591 -12.17600 -11.86628 -11.76171 -11.71242 -11.42596 -11.39752 -11.07835 -10.71720 -10.45897 -10.41777 -10.16972 -10.09513 -10.01622 -9.82806 -9.45581 -9.29090 -9.23653 -8.52881 -8.45288 -8.34084 -6.81997 -6.10279 -3.31353 1.70256 2.56003 2.71477 2.79974 3.11521 3.48472 3.53241 3.67981 4.38422 4.45339 4.48066 4.52513 4.65711 4.74945 4.93268 4.95807 5.09322 5.11634 5.14848 5.19839 5.25458 5.31257 5.45394 5.47091 5.49935 5.52631 5.60550 5.62815 5.64455 5.70659 5.78814 5.87516 5.90792 5.95519 5.98760 6.01504 6.05804 6.12184 6.18957 6.32993 6.42250 6.47233 6.57675 6.61774 6.66044 6.72574 7.04867 7.14715 7.16240 7.61217 7.92702 8.04740 8.37256 8.58708 9.09927 9.82275 10.29556 11.19793 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.002535 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.391044 B =11041.972228 C =11514.713289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.118 3.882 3 N -0.304 5.304 4 N -0.480 5.480 5 H 0.436 0.564 6 C 0.090 3.910 7 C -0.094 4.094 8 C -0.215 4.215 9 C -0.024 4.024 10 H 0.095 0.905 11 C -0.143 4.143 12 C 0.535 3.465 13 O -0.535 6.535 14 N -0.641 5.641 15 C 0.107 3.893 16 C -0.103 4.103 17 C 0.131 3.869 18 C -0.081 4.081 19 C -0.137 4.137 20 C 0.152 3.848 21 N -0.594 5.594 22 C -0.353 4.353 23 H 0.052 0.948 24 C -0.019 4.019 25 N -0.914 5.914 26 Si 1.068 2.932 27 H -0.293 1.293 28 H -0.287 1.287 29 H -0.291 1.291 30 C 0.164 3.836 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.017 0.983 50 H 0.270 0.730 51 H 0.021 0.979 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.967 13.595 -14.005 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.048 4.048 3 N -0.127 5.127 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.038 4.038 7 C -0.153 4.153 8 C -0.227 4.227 9 C -0.046 4.046 10 H 0.113 0.887 11 C -0.201 4.201 12 C 0.324 3.676 13 O -0.411 6.411 14 N -0.377 5.377 15 C -0.017 4.017 16 C -0.106 4.106 17 C 0.010 3.990 18 C -0.119 4.119 19 C -0.176 4.176 20 C 0.026 3.974 21 N -0.318 5.318 22 C -0.482 4.482 23 H 0.070 0.930 24 C -0.222 4.222 25 N -0.553 5.553 26 Si 0.898 3.102 27 H -0.221 1.221 28 H -0.212 1.212 29 H -0.218 1.218 30 C 0.037 3.963 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.035 0.965 50 H 0.081 0.919 51 H 0.039 0.961 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.052 14.816 -12.391 22.253 hybrid contribution 1.321 0.240 -1.294 1.864 sum 12.373 15.055 -13.685 23.812 Atomic orbital electron populations 1.20310 0.86825 1.02123 1.03735 1.22063 0.96886 0.89663 0.96218 1.77285 0.86277 1.22272 1.26914 1.46053 1.07400 1.04545 1.60771 0.72090 1.20780 0.96605 0.85188 1.01272 1.20485 0.92916 0.98503 1.03369 1.19093 0.91186 0.94726 1.17690 1.19422 0.98071 0.93022 0.94107 0.88736 1.21863 1.00606 1.02168 0.95433 1.20215 0.80995 0.80762 0.85612 1.90680 1.58556 1.40496 1.51409 1.50171 1.53352 1.06232 1.27930 1.23302 1.01606 0.79983 0.96784 1.22604 0.97816 0.96558 0.93614 1.23093 0.95621 0.89139 0.91177 1.21083 0.94581 1.00045 0.96150 1.21997 0.99434 1.01072 0.95141 1.20795 0.87387 0.92464 0.96720 1.44021 1.02440 1.79612 1.05700 1.19864 0.86540 1.14845 1.26933 0.93026 1.25949 1.03841 0.91222 1.01212 1.70759 1.18331 1.25648 1.40602 0.83486 0.74902 0.75241 0.76586 1.22078 1.21237 1.21779 1.20800 0.95672 0.91679 0.88144 0.89398 0.91770 0.90849 0.90027 0.90983 0.89595 0.91615 0.91612 0.91741 0.90492 0.89627 0.89932 0.90537 0.92170 0.93160 0.92982 0.92334 0.90954 0.96548 0.91905 0.96085 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 8.68 36.00 0.31 -0.59 16 2 C 0.12 1.63 6.50 -82.40 -0.54 1.10 16 3 N -0.30 -4.22 12.70 33.67 0.43 -3.80 16 4 N -0.48 -5.07 7.36 33.48 0.25 -4.83 16 5 H 0.44 3.07 8.96 -182.62 -1.64 1.44 16 6 C 0.09 0.93 7.21 -82.26 -0.59 0.33 16 7 C -0.09 -0.59 10.09 36.01 0.36 -0.23 16 8 C -0.22 -2.65 4.49 -105.05 -0.47 -3.12 16 9 C -0.02 -0.26 2.63 -92.92 -0.24 -0.51 16 10 H 0.09 0.88 6.76 -51.93 -0.35 0.53 16 11 C -0.14 -1.29 9.03 37.16 0.34 -0.96 16 12 C 0.54 7.74 6.81 -10.99 -0.07 7.66 16 13 O -0.53 -9.65 13.92 5.55 0.08 -9.58 16 14 N -0.64 -8.87 3.44 -180.45 -0.62 -9.49 16 15 C 0.11 1.24 6.30 -3.17 -0.02 1.22 16 16 C -0.10 -1.56 0.87 -154.43 -0.13 -1.70 16 17 C 0.13 2.11 7.81 -3.17 -0.02 2.08 16 18 C -0.08 -1.22 5.02 -26.83 -0.13 -1.36 16 19 C -0.14 -2.44 5.99 -26.81 -0.16 -2.60 16 20 C 0.15 3.34 4.64 -4.00 -0.02 3.32 16 21 N -0.59 -13.78 2.78 -172.75 -0.48 -14.26 16 22 C -0.35 -9.35 9.45 -15.06 -0.14 -9.49 16 23 H 0.05 1.38 7.93 -52.49 -0.42 0.97 16 24 C -0.02 -0.53 4.70 -17.44 -0.08 -0.61 16 25 N -0.91 -26.59 12.70 55.49 0.70 -25.89 16 26 Si 1.07 24.75 29.98 -169.99 -5.10 19.66 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 30 C 0.16 3.06 5.71 -3.81 -0.02 3.03 16 31 H 0.09 1.26 7.27 -51.93 -0.38 0.88 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.86 5.07 -51.93 -0.26 0.59 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.54 7.09 -51.93 -0.37 0.17 16 37 H 0.07 0.64 5.42 -51.93 -0.28 0.35 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.54 6.58 -51.93 -0.34 0.19 16 40 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 41 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 42 H 0.08 1.36 7.97 -51.93 -0.41 0.95 16 43 H 0.08 1.36 7.37 -51.93 -0.38 0.98 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.05 0.72 8.02 -51.93 -0.42 0.31 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.11 7.37 -51.93 -0.38 0.73 16 48 H 0.07 1.81 6.63 -51.93 -0.34 1.47 16 49 H 0.02 0.37 7.88 -51.93 -0.41 -0.04 16 50 H 0.27 7.86 6.69 -40.82 -0.27 7.59 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.06 1.10 7.78 -51.93 -0.40 0.70 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -33.54 398.05 -10.04 -43.59 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -9.66 Total: 1.00 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.65 Total: -2.40 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.28 Total: -58.27 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.10 Total: 19.66 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.54 -10.04 -43.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982071773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.301 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds