Wall clock time and date at job start Wed Apr 1 2020 03:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30839 * 125.90199 * 2 1 4 4 N 1.40075 * 108.20892 * 180.26239 * 3 2 1 5 5 H 0.97001 * 126.04112 * 179.74173 * 4 3 2 6 6 C 1.34950 * 107.92679 * 359.72216 * 4 3 2 7 7 C 1.50703 * 126.13018 * 179.97438 * 6 4 3 8 8 C 1.35320 * 107.74529 * 0.02562 * 6 4 3 9 9 C 1.50697 * 126.04270 * 179.97438 * 8 6 4 10 10 H 1.09001 * 109.47282 * 4.07433 * 9 8 6 11 11 C 1.53007 * 109.47117 * 244.07201 * 9 8 6 12 12 C 1.50704 * 109.47293 * 124.07373 * 9 8 6 13 13 O 1.21285 * 119.99748 * 6.61657 * 12 9 8 14 14 N 1.34768 * 120.00215 * 186.61694 * 12 9 8 15 15 C 1.47677 * 134.45312 * 355.60846 * 14 12 9 16 16 C 1.53446 * 85.97251 * 155.70949 * 15 14 12 17 17 C 1.47668 * 134.45448 * 175.60302 * 14 12 9 18 18 C 1.52632 * 113.71279 * 268.84675 * 16 15 14 19 19 C 1.53181 * 109.35309 * 171.27448 * 18 16 15 20 20 C 1.52666 * 109.42841 * 58.93039 * 19 18 16 21 21 N 1.46892 * 109.34731 * 303.77152 * 20 19 18 22 22 C 1.36937 * 120.68962 * 235.31105 * 21 20 19 23 23 H 1.08001 * 120.00140 * 145.77368 * 22 21 20 24 24 C 1.38810 * 119.99826 * 325.76724 * 22 21 20 25 25 N 1.31610 * 120.00451 * 336.93170 * 24 22 21 26 26 Si 1.86806 * 119.99884 * 156.92739 * 24 22 21 27 27 H 1.48497 * 109.47236 * 90.00115 * 26 24 22 28 28 H 1.48502 * 109.47298 * 210.00463 * 26 24 22 29 29 H 1.48506 * 109.47087 * 330.00302 * 26 24 22 30 30 C 1.47114 * 118.62127 * 55.03666 * 21 20 19 31 31 H 1.09001 * 109.46927 * 274.72169 * 1 2 3 32 32 H 1.09005 * 109.47169 * 34.72065 * 1 2 3 33 33 H 1.09002 * 109.47510 * 154.72577 * 1 2 3 34 34 H 1.08994 * 109.46969 * 270.02378 * 7 6 4 35 35 H 1.08990 * 109.47081 * 30.02478 * 7 6 4 36 36 H 1.09003 * 109.47116 * 150.02671 * 7 6 4 37 37 H 1.08999 * 109.46655 * 304.95660 * 11 9 8 38 38 H 1.08992 * 109.46751 * 64.95687 * 11 9 8 39 39 H 1.08997 * 109.46745 * 184.95707 * 11 9 8 40 40 H 1.08996 * 113.79494 * 41.44188 * 15 14 12 41 41 H 1.09004 * 113.79188 * 269.96906 * 15 14 12 42 42 H 1.08998 * 113.79722 * 90.02828 * 17 14 12 43 43 H 1.08998 * 113.79685 * 318.55065 * 17 14 12 44 44 H 1.08997 * 109.49547 * 291.24316 * 18 16 15 45 45 H 1.09001 * 109.49022 * 51.31160 * 18 16 15 46 46 H 1.09007 * 109.49029 * 179.02550 * 19 18 16 47 47 H 1.08995 * 109.49248 * 299.09722 * 19 18 16 48 48 H 1.08997 * 109.44502 * 183.77920 * 20 19 18 49 49 H 1.09007 * 109.36790 * 63.71023 * 20 19 18 50 50 H 0.97003 * 119.99955 * 357.84343 * 25 24 22 51 51 H 1.09004 * 109.64097 * 68.58218 * 30 21 20 52 52 H 1.09007 * 109.64118 * 189.19329 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0061 5 1 4.3908 1.2079 -0.0110 6 6 3.6142 -0.7154 -0.0035 7 6 4.8350 -1.5990 -0.0087 8 6 2.3271 -1.1331 0.0034 9 6 1.8599 -2.5658 0.0078 10 1 2.7221 -3.2289 0.0776 11 6 1.0958 -2.8570 -1.2854 12 6 0.9530 -2.7948 1.1895 13 8 0.6137 -1.8599 1.8836 14 7 0.5192 -4.0384 1.4750 15 6 0.6568 -5.3566 0.8238 16 6 0.4158 -5.9499 2.2182 17 6 -0.2841 -4.6288 2.5643 18 6 1.6968 -6.1916 3.0122 19 6 1.3374 -6.5737 4.4514 20 6 0.4714 -7.8309 4.4419 21 7 -0.7144 -7.5986 3.6065 22 6 -1.9731 -7.7843 4.1126 23 1 -2.7850 -7.1508 3.7870 24 6 -2.2057 -8.7869 5.0441 25 7 -1.3952 -9.8214 5.1138 26 14 -3.6693 -8.6677 6.1988 27 1 -4.8481 -9.3185 5.5728 28 1 -3.3478 -9.3506 7.4777 29 1 -3.9755 -7.2389 6.4640 30 6 -0.5216 -7.1565 2.2167 31 1 -0.3633 0.0846 1.0242 32 1 -0.3634 0.8447 -0.5854 33 1 -0.3634 -0.9293 -0.4388 34 1 5.1238 -1.8136 -1.0375 35 1 5.6538 -1.0903 0.4999 36 1 4.6103 -2.5322 0.5078 37 1 0.2857 -2.1366 -1.3988 38 1 1.7746 -2.7770 -2.1343 39 1 0.6827 -3.8648 -1.2441 40 1 1.6544 -5.5505 0.4298 41 1 -0.1353 -5.5786 0.1086 42 1 -1.3560 -4.6343 2.3671 43 1 -0.0339 -4.2446 3.5532 44 1 2.2630 -7.0011 2.5516 45 1 2.2988 -5.2829 3.0167 46 1 2.2504 -6.7637 5.0160 47 1 0.7846 -5.7579 4.9171 48 1 0.1599 -8.0646 5.4600 49 1 1.0464 -8.6629 4.0354 50 1 -0.6533 -9.8990 4.4936 51 1 -0.0786 -7.9639 1.6335 52 1 -1.4820 -6.8737 1.7856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982071773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:54 Heat of formation + Delta-G solvation = 60.509200 kcal Electronic energy + Delta-G solvation = -31848.777471 eV Core-core repulsion = 27850.273229 eV Total energy + Delta-G solvation = -3998.504242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.52281 -41.70627 -39.57407 -37.59347 -35.29376 -34.54320 -34.25929 -32.31091 -31.73409 -30.77477 -29.02961 -27.77658 -27.37456 -27.17162 -26.95323 -24.72650 -23.99630 -22.38057 -21.15688 -20.99837 -19.73372 -19.28894 -19.13744 -18.33615 -17.64628 -16.85656 -16.65617 -16.21184 -16.03064 -15.90461 -15.55493 -15.41683 -14.94506 -14.90659 -14.64850 -14.62287 -14.21905 -14.04674 -13.92576 -13.68184 -13.60352 -13.39450 -13.30209 -13.23882 -13.03503 -12.95368 -12.81713 -12.70574 -12.50959 -12.43925 -12.20568 -11.94168 -11.90876 -11.76036 -11.56141 -11.31250 -11.26457 -11.01896 -10.60712 -10.35821 -10.17888 -9.60637 -9.34308 -8.78125 -8.18690 -5.40072 0.89606 1.58881 1.60210 1.66730 1.72769 1.83374 1.97748 2.07798 2.65694 3.24852 3.36493 3.49458 3.65966 3.74994 3.75535 3.84057 4.04770 4.11529 4.22068 4.26574 4.27837 4.30031 4.39987 4.45670 4.47594 4.54721 4.64335 4.65092 4.69923 4.75633 4.79895 4.81166 4.88433 4.88544 4.92691 4.97651 5.02860 5.03915 5.10155 5.13056 5.16435 5.21771 5.26600 5.27179 5.37753 5.41166 5.53287 5.72158 5.94321 6.46574 6.48137 6.74402 6.85746 7.15550 7.27965 7.83177 8.31151 9.05967 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.002535 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.391044 B =11041.972228 C =11514.713289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.097 3.903 3 N -0.342 5.342 4 N -0.473 5.473 5 H 0.449 0.551 6 C 0.102 3.898 7 C -0.093 4.093 8 C -0.243 4.243 9 C -0.012 4.012 10 H 0.122 0.878 11 C -0.140 4.140 12 C 0.530 3.470 13 O -0.579 6.579 14 N -0.637 5.637 15 C 0.123 3.877 16 C -0.099 4.099 17 C 0.125 3.875 18 C -0.073 4.073 19 C -0.128 4.128 20 C 0.159 3.841 21 N -0.613 5.613 22 C -0.351 4.351 23 H 0.043 0.957 24 C -0.070 4.070 25 N -0.943 5.943 26 Si 1.111 2.889 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.281 1.281 30 C 0.164 3.836 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.039 0.961 48 H 0.031 0.969 49 H 0.011 0.989 50 H 0.258 0.742 51 H 0.030 0.970 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.330 13.727 -16.380 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.068 4.068 3 N -0.166 5.166 4 N -0.183 5.183 5 H 0.295 0.705 6 C -0.028 4.028 7 C -0.151 4.151 8 C -0.254 4.254 9 C -0.035 4.035 10 H 0.140 0.860 11 C -0.197 4.197 12 C 0.321 3.679 13 O -0.458 6.458 14 N -0.372 5.372 15 C 0.001 3.999 16 C -0.101 4.101 17 C 0.002 3.998 18 C -0.110 4.110 19 C -0.167 4.167 20 C 0.033 3.967 21 N -0.338 5.338 22 C -0.481 4.481 23 H 0.061 0.939 24 C -0.268 4.268 25 N -0.584 5.584 26 Si 0.937 3.063 27 H -0.208 1.208 28 H -0.218 1.218 29 H -0.206 1.206 30 C 0.038 3.962 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.134 0.866 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.029 0.971 50 H 0.068 0.932 51 H 0.048 0.952 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.437 14.966 -14.814 24.980 hybrid contribution 0.619 0.264 -0.555 0.873 sum 14.056 15.231 -15.369 25.802 Atomic orbital electron populations 1.20226 0.87074 1.02877 1.02270 1.22273 0.97224 0.90599 0.96744 1.77193 0.87846 1.23163 1.28408 1.46108 1.06919 1.05276 1.59972 0.70489 1.21412 0.97481 0.85178 0.98683 1.20669 0.91390 0.97853 1.05215 1.19351 0.91833 0.95003 1.19252 1.19443 0.98157 0.92901 0.92953 0.86005 1.21872 1.00509 1.02352 0.94995 1.20977 0.80826 0.80030 0.86029 1.90674 1.60120 1.41897 1.53122 1.50162 1.52617 1.07040 1.27355 1.23406 1.04516 0.77301 0.94652 1.22453 0.96907 0.94118 0.96604 1.22944 0.95509 0.90429 0.90956 1.21041 0.94714 1.01353 0.93910 1.21855 0.99056 0.98048 0.97773 1.20645 0.87504 0.94298 0.94239 1.44232 1.01710 1.79897 1.07946 1.20061 0.87840 1.13704 1.26497 0.93882 1.27100 1.05719 0.91067 1.02867 1.70866 1.19182 1.27103 1.41286 0.82893 0.72884 0.75741 0.74795 1.20791 1.21780 1.20625 1.20911 0.96567 0.93161 0.85556 0.91952 0.90824 0.90246 0.87633 0.89339 0.89018 0.92907 0.89575 0.90592 0.86639 0.87778 0.91155 0.93061 0.90237 0.91510 0.91011 0.94188 0.95054 0.97056 0.93231 0.95239 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.71 8.68 71.24 0.62 -1.09 16 2 C 0.10 2.65 6.50 43.10 0.28 2.93 16 3 N -0.34 -9.38 12.70 -47.38 -0.60 -9.98 16 4 N -0.47 -9.17 7.36 -48.00 -0.35 -9.53 16 5 H 0.45 5.47 8.96 -213.34 -1.91 3.56 16 6 C 0.10 1.80 7.21 41.41 0.30 2.10 16 7 C -0.09 -0.74 10.09 71.24 0.72 -0.02 16 8 C -0.24 -5.46 4.49 -20.14 -0.09 -5.55 16 9 C -0.01 -0.23 2.63 -12.28 -0.03 -0.27 16 10 H 0.12 1.62 6.76 -2.39 -0.02 1.60 16 11 C -0.14 -2.03 9.03 71.98 0.65 -1.38 16 12 C 0.53 14.40 6.81 87.66 0.60 15.00 16 13 O -0.58 -21.00 13.92 -3.04 -0.04 -21.04 16 14 N -0.64 -16.17 3.44 -843.21 -2.90 -19.07 16 15 C 0.12 2.35 6.30 86.30 0.54 2.89 16 16 C -0.10 -2.76 0.87 -52.03 -0.05 -2.80 16 17 C 0.12 3.94 7.81 86.30 0.67 4.62 16 18 C -0.07 -1.99 5.02 30.53 0.15 -1.83 16 19 C -0.13 -4.46 5.99 30.54 0.18 -4.28 16 20 C 0.16 7.08 4.64 86.19 0.40 7.48 16 21 N -0.61 -28.80 2.78 -700.46 -1.95 -30.75 16 22 C -0.35 -19.01 9.45 84.03 0.79 -18.22 16 23 H 0.04 2.37 7.93 -2.91 -0.02 2.34 16 24 C -0.07 -3.93 4.70 84.86 0.40 -3.53 16 25 N -0.94 -56.39 12.70 21.65 0.28 -56.11 16 26 Si 1.11 50.95 29.98 68.60 2.06 53.00 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 29 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 30 C 0.16 5.92 5.71 86.19 0.49 6.41 16 31 H 0.06 1.91 7.27 -2.39 -0.02 1.89 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.08 1.88 5.07 -2.39 -0.01 1.86 16 34 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.09 0.69 7.09 -2.39 -0.02 0.67 16 37 H 0.05 0.91 5.42 -2.39 -0.01 0.90 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.92 6.58 -2.39 -0.02 0.90 16 40 H 0.12 1.44 8.09 -2.39 -0.02 1.42 16 41 H 0.10 1.69 8.04 -2.38 -0.02 1.67 16 42 H 0.07 2.37 7.97 -2.39 -0.02 2.35 16 43 H 0.05 1.87 7.37 -2.39 -0.02 1.85 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 1.67 8.02 -2.39 -0.02 1.65 16 46 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 47 H 0.04 1.53 7.37 -2.39 -0.02 1.51 16 48 H 0.03 1.62 6.63 -2.39 -0.02 1.61 16 49 H 0.01 0.51 7.88 -2.38 -0.02 0.50 16 50 H 0.26 15.51 6.69 -92.71 -0.62 14.89 16 51 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 52 H 0.05 1.97 7.78 -2.38 -0.02 1.95 16 Total: -1.00 -77.57 398.05 2.29 -75.27 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -0.83 Total: 15.73 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 6.63 Total: 2.47 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -5.53 Total: -125.44 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.04 Total: -21.04 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.06 Total: 53.00 kcal Total: -77.57 2.29 -75.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982071773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.782 kcal (2) G-P(sol) polarization free energy of solvation -77.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds