Wall clock time and date at job start Wed Apr 1 2020 03:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30836 * 125.89544 * 2 1 4 4 N 1.40089 * 108.20535 * 180.14514 * 3 2 1 5 5 H 0.96998 * 126.04231 * 179.85459 * 4 3 2 6 6 C 1.34954 * 107.92103 * 359.59068 * 4 3 2 7 7 C 1.50702 * 126.12567 * 180.26186 * 6 4 3 8 8 C 1.35315 * 107.74625 * 0.24194 * 6 4 3 9 9 C 1.50702 * 126.04009 * 179.97438 * 8 6 4 10 10 C 1.50702 * 109.46852 * 89.99871 * 9 8 6 11 11 O 1.21280 * 120.00184 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00011 * 180.02562 * 10 9 8 13 13 C 1.47206 * 126.70211 * 359.68920 * 12 10 9 14 14 C 1.54035 * 106.26455 * 148.62906 * 13 12 10 15 15 C 1.52996 * 112.77608 * 141.68640 * 14 13 12 16 16 C 1.54319 * 109.25429 * 267.02369 * 14 13 12 17 17 N 1.48110 * 104.71418 * 136.29834 * 16 14 13 18 18 C 1.36938 * 127.84151 * 140.24538 * 17 16 14 19 19 H 1.07995 * 119.99934 * 344.48294 * 18 17 16 20 20 C 1.38817 * 119.99588 * 164.49051 * 18 17 16 21 21 N 1.31609 * 120.00201 * 350.60672 * 20 18 17 22 22 Si 1.86807 * 119.99612 * 170.60691 * 20 18 17 23 23 H 1.48500 * 109.47113 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47010 * 119.99634 * 22 20 18 25 25 H 1.48495 * 109.47000 * 240.00123 * 22 20 18 26 26 C 1.49981 * 104.93679 * 320.71315 * 17 16 14 27 27 C 1.54313 * 103.81332 * 38.70032 * 26 17 16 28 28 C 1.53002 * 112.07402 * 99.66038 * 27 26 17 29 29 C 1.47200 * 126.70629 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.46772 * 270.29973 * 1 2 3 31 31 H 1.09001 * 109.46828 * 30.30333 * 1 2 3 32 32 H 1.08999 * 109.46889 * 150.30304 * 1 2 3 33 33 H 1.09005 * 109.47145 * 89.97466 * 7 6 4 34 34 H 1.08996 * 109.46983 * 209.97601 * 7 6 4 35 35 H 1.09002 * 109.46741 * 329.97890 * 7 6 4 36 36 H 1.08996 * 109.47636 * 210.00121 * 9 8 6 37 37 H 1.09005 * 109.47049 * 330.00830 * 9 8 6 38 38 H 1.08997 * 110.06899 * 267.93852 * 13 12 10 39 39 H 1.09001 * 110.06967 * 29.46973 * 13 12 10 40 40 H 1.09008 * 109.46819 * 301.38061 * 15 14 13 41 41 H 1.09000 * 109.46957 * 61.37311 * 15 14 13 42 42 H 1.08997 * 109.47393 * 181.38128 * 15 14 13 43 43 H 1.08994 * 110.38475 * 255.10935 * 16 14 13 44 44 H 1.09005 * 110.38927 * 17.48824 * 16 14 13 45 45 H 0.96998 * 120.00062 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.28520 * 280.44238 * 26 17 16 47 47 H 1.09003 * 111.34581 * 157.47704 * 26 17 16 48 48 H 1.08997 * 109.47044 * 182.00371 * 28 27 26 49 49 H 1.09000 * 109.47389 * 302.01027 * 28 27 26 50 50 H 1.09005 * 109.46764 * 62.00951 * 28 27 26 51 51 H 1.09006 * 110.06550 * 330.53233 * 29 12 10 52 52 H 1.08996 * 110.07138 * 92.00380 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0034 5 1 4.3909 1.2080 -0.0061 6 6 3.6143 -0.7153 0.0038 7 6 4.8351 -1.5988 0.0089 8 6 2.3272 -1.1330 0.0060 9 6 1.8600 -2.5657 0.0131 10 6 1.7045 -3.0363 1.4362 11 8 1.9485 -2.2824 2.3544 12 7 1.2942 -4.2950 1.6888 13 6 0.9535 -5.3255 0.6943 14 6 1.3238 -6.6784 1.3308 15 6 0.3176 -7.7830 1.0017 16 6 2.7602 -7.0600 0.9156 17 7 3.3923 -7.5561 2.1598 18 6 4.2448 -8.6181 2.3033 19 1 4.3345 -9.3491 1.5135 20 6 4.9935 -8.7550 3.4642 21 7 5.0273 -7.7773 4.3446 22 14 5.9530 -10.3270 3.7767 23 1 5.7510 -11.2640 2.6425 24 1 7.3978 -10.0082 3.9033 25 1 5.4735 -10.9583 5.0324 26 6 2.8861 -6.6467 3.2397 27 6 1.4121 -6.4016 2.8541 28 6 0.4534 -7.2823 3.6580 29 6 1.0927 -4.9058 3.0129 30 1 -0.3633 0.0054 1.0277 31 1 -0.3633 0.8873 -0.5185 32 1 -0.3633 -0.8927 -0.5091 33 1 5.1294 -1.8060 1.0378 34 1 4.6077 -2.5357 -0.4997 35 1 5.6513 -1.0937 -0.5077 36 1 0.9012 -2.6378 -0.5003 37 1 2.5935 -3.1896 -0.4977 38 1 -0.1133 -5.2932 0.4727 39 1 1.5303 -5.1706 -0.2175 40 1 -0.6724 -7.4883 1.3503 41 1 0.2910 -7.9408 -0.0765 42 1 0.6170 -8.7066 1.4969 43 1 2.7411 -7.8454 0.1601 44 1 3.2925 -6.1853 0.5418 45 1 5.5502 -7.8731 5.1560 46 1 3.4410 -5.7085 3.2346 47 1 2.9487 -7.1206 4.2192 48 1 -0.5695 -7.1013 3.3279 49 1 0.7056 -8.3311 3.5012 50 1 0.5413 -7.0420 4.7175 51 1 1.7679 -4.4541 3.7397 52 1 0.0586 -4.7749 3.3317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982799458.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:18 Heat of formation + Delta-G solvation = 61.252890 kcal Electronic energy + Delta-G solvation = -32291.372934 eV Core-core repulsion = 28292.900940 eV Total energy + Delta-G solvation = -3998.471993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.43116 -40.32246 -38.25783 -34.76919 -33.49069 -33.06558 -32.73708 -31.70585 -30.58617 -29.37525 -27.76138 -27.04769 -26.37784 -25.74596 -25.02693 -24.75900 -22.14899 -20.31366 -20.12153 -19.84919 -18.75512 -17.78274 -17.26498 -16.94027 -16.46403 -15.58909 -15.25496 -14.82843 -14.55553 -14.31269 -14.20056 -13.86315 -13.70388 -13.39308 -13.35207 -13.30194 -13.14570 -12.94994 -12.73622 -12.42368 -12.33679 -12.06300 -12.00456 -11.91760 -11.70161 -11.67883 -11.48184 -11.36490 -11.27942 -10.85664 -10.78234 -10.69182 -10.52429 -10.05704 -9.93433 -9.87756 -9.75716 -9.54128 -9.48342 -9.23118 -8.65559 -8.36818 -8.30784 -6.83416 -5.77987 -3.11915 1.84934 2.61793 2.82965 2.95407 3.36692 3.41292 3.43153 3.45352 4.45562 4.59590 4.61103 4.74313 4.86170 4.94708 5.07277 5.09746 5.22647 5.27280 5.34813 5.40816 5.46432 5.52018 5.54311 5.58418 5.63917 5.66650 5.71628 5.78121 5.79560 5.87976 5.88412 5.92851 5.98534 6.14300 6.15320 6.16340 6.20109 6.32684 6.47416 6.49022 6.54436 6.65022 6.66228 6.74278 6.84640 6.96502 7.26608 7.36285 7.56241 7.68336 7.73045 7.89230 8.18709 8.50992 9.09587 9.74926 10.52066 11.35935 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003187 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.457957 B = 8784.199870 C = 9851.990928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.094 3.906 3 N -0.301 5.301 4 N -0.478 5.478 5 H 0.436 0.564 6 C 0.107 3.893 7 C -0.097 4.097 8 C -0.218 4.218 9 C -0.055 4.055 10 C 0.531 3.469 11 O -0.536 6.536 12 N -0.613 5.613 13 C 0.113 3.887 14 C -0.084 4.084 15 C -0.120 4.120 16 C 0.143 3.857 17 N -0.595 5.595 18 C -0.225 4.225 19 H 0.074 0.926 20 C -0.005 4.005 21 N -0.913 5.913 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.176 3.824 27 C -0.092 4.092 28 C -0.119 4.119 29 C 0.119 3.881 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.019 0.981 45 H 0.253 0.747 46 H 0.023 0.977 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.065 0.935 50 H 0.050 0.950 51 H 0.078 0.922 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 9.605 -10.824 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 N -0.125 5.125 4 N -0.185 5.185 5 H 0.280 0.720 6 C -0.021 4.021 7 C -0.155 4.155 8 C -0.229 4.229 9 C -0.096 4.096 10 C 0.320 3.680 11 O -0.413 6.413 12 N -0.346 5.346 13 C -0.010 4.010 14 C -0.086 4.086 15 C -0.178 4.178 16 C 0.016 3.984 17 N -0.319 5.319 18 C -0.353 4.353 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.559 5.559 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.051 3.949 27 C -0.094 4.094 28 C -0.177 4.177 29 C -0.004 4.004 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.041 0.959 47 H 0.103 0.897 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.070 0.930 51 H 0.096 0.904 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.178 11.276 -10.205 17.763 hybrid contribution 1.115 -1.327 0.290 1.757 sum -8.063 9.948 -9.915 16.195 Atomic orbital electron populations 1.20180 0.86979 1.02918 1.03163 1.22101 0.96756 0.90153 0.98261 1.77220 0.86458 1.22249 1.26542 1.46044 1.07233 1.04752 1.60510 0.72019 1.20841 0.96921 0.84891 0.99484 1.20522 0.92628 0.98246 1.04141 1.19007 0.91365 0.94673 1.17862 1.19858 1.03151 0.92377 0.94221 1.20264 0.76397 0.79906 0.91478 1.90691 1.50091 1.53658 1.46842 1.48452 1.66415 1.11160 1.08593 1.22177 0.99478 0.87378 0.91999 1.22370 0.97921 0.93118 0.95233 1.21614 0.97270 0.98454 1.00459 1.21672 0.89598 0.96344 0.90744 1.45323 1.52579 1.33032 1.00975 1.19010 1.15166 0.98675 1.02473 0.90785 1.24857 0.98977 0.97879 0.98472 1.69913 1.44131 1.30560 1.11339 0.86123 0.79513 0.82767 0.77801 1.20446 1.21835 1.21701 1.21919 0.85362 0.93081 0.94554 1.22515 1.00306 0.92313 0.94310 1.21613 0.96926 1.00231 0.98895 1.22063 1.00194 0.92857 0.85253 0.90368 0.90993 0.90601 0.89538 0.89450 0.91102 0.88562 0.88534 0.91905 0.90797 0.93042 0.93224 0.91412 0.93513 0.96328 0.93713 0.95901 0.89672 0.93560 0.91596 0.93049 0.90361 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.26 36.01 0.37 -0.39 16 2 C 0.09 1.28 7.22 -82.40 -0.59 0.69 16 3 N -0.30 -4.32 12.70 33.67 0.43 -3.89 16 4 N -0.48 -5.82 7.36 33.48 0.25 -5.57 16 5 H 0.44 3.85 8.96 -182.61 -1.64 2.21 16 6 C 0.11 1.36 7.21 -82.26 -0.59 0.77 16 7 C -0.10 -1.01 10.22 36.01 0.37 -0.64 16 8 C -0.22 -2.94 4.59 -105.05 -0.48 -3.43 16 9 C -0.06 -0.67 4.76 -29.03 -0.14 -0.81 16 10 C 0.53 8.48 7.87 -10.98 -0.09 8.39 16 11 O -0.54 -10.74 16.26 5.56 0.09 -10.65 16 12 N -0.61 -9.39 3.32 -171.44 -0.57 -9.96 16 13 C 0.11 1.45 5.80 -3.12 -0.02 1.44 16 14 C -0.08 -1.29 1.08 -152.18 -0.16 -1.46 16 15 C -0.12 -1.58 7.53 37.16 0.28 -1.30 16 16 C 0.14 2.73 6.32 -2.47 -0.02 2.72 16 17 N -0.60 -14.32 3.41 -167.44 -0.57 -14.89 16 18 C -0.22 -6.00 10.35 -15.06 -0.16 -6.15 16 19 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 20 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 21 N -0.91 -26.31 10.87 55.49 0.60 -25.71 16 22 Si 0.91 21.52 29.56 -169.99 -5.03 16.49 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.18 4.05 5.02 -1.41 -0.01 4.04 16 27 C -0.09 -1.60 1.06 -152.32 -0.16 -1.76 16 28 C -0.12 -1.86 7.45 37.16 0.28 -1.58 16 29 C 0.12 1.98 5.94 -3.25 -0.02 1.96 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.63 7.25 -51.93 -0.38 0.25 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.86 7.15 -51.93 -0.37 0.49 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.92 7.26 -51.93 -0.38 0.55 16 37 H 0.10 1.04 6.87 -51.93 -0.36 0.68 16 38 H 0.06 0.68 7.93 -51.93 -0.41 0.26 16 39 H 0.07 0.84 6.79 -51.93 -0.35 0.48 16 40 H 0.05 0.59 7.09 -51.92 -0.37 0.22 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.02 7.16 -51.93 -0.37 0.65 16 43 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 44 H 0.02 0.37 7.55 -51.93 -0.39 -0.02 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.59 7.52 -51.93 -0.39 0.20 16 47 H 0.09 2.21 6.37 -51.93 -0.33 1.88 16 48 H 0.05 0.60 7.10 -51.93 -0.37 0.23 16 49 H 0.07 1.12 7.16 -51.93 -0.37 0.75 16 50 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.08 1.50 7.35 -51.93 -0.38 1.11 16 52 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 LS Contribution 403.16 15.07 6.08 6.08 Total: -1.00 -34.30 403.16 -9.72 -44.02 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -9.76 Total: 1.83 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.24 Total: 2.26 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.14 Total: -60.02 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.30 -9.72 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982799458.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.272 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds