Wall clock time and date at job start Wed Apr 1 2020 03:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30836 * 125.89544 * 2 1 4 4 N 1.40089 * 108.20535 * 180.14514 * 3 2 1 5 5 H 0.96998 * 126.04231 * 179.85459 * 4 3 2 6 6 C 1.34954 * 107.92103 * 359.59068 * 4 3 2 7 7 C 1.50702 * 126.12567 * 180.26186 * 6 4 3 8 8 C 1.35315 * 107.74625 * 0.24194 * 6 4 3 9 9 C 1.50702 * 126.04009 * 179.97438 * 8 6 4 10 10 C 1.50702 * 109.46852 * 89.99871 * 9 8 6 11 11 O 1.21280 * 120.00184 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00011 * 180.02562 * 10 9 8 13 13 C 1.47206 * 126.70211 * 359.68920 * 12 10 9 14 14 C 1.54035 * 106.26455 * 148.62906 * 13 12 10 15 15 C 1.52996 * 112.77608 * 141.68640 * 14 13 12 16 16 C 1.54319 * 109.25429 * 267.02369 * 14 13 12 17 17 N 1.48110 * 104.71418 * 136.29834 * 16 14 13 18 18 C 1.36938 * 127.84151 * 140.24538 * 17 16 14 19 19 H 1.07995 * 119.99934 * 344.48294 * 18 17 16 20 20 C 1.38817 * 119.99588 * 164.49051 * 18 17 16 21 21 N 1.31609 * 120.00201 * 350.60672 * 20 18 17 22 22 Si 1.86807 * 119.99612 * 170.60691 * 20 18 17 23 23 H 1.48500 * 109.47113 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47010 * 119.99634 * 22 20 18 25 25 H 1.48495 * 109.47000 * 240.00123 * 22 20 18 26 26 C 1.49981 * 104.93679 * 320.71315 * 17 16 14 27 27 C 1.54313 * 103.81332 * 38.70032 * 26 17 16 28 28 C 1.53002 * 112.07402 * 99.66038 * 27 26 17 29 29 C 1.47200 * 126.70629 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.46772 * 270.29973 * 1 2 3 31 31 H 1.09001 * 109.46828 * 30.30333 * 1 2 3 32 32 H 1.08999 * 109.46889 * 150.30304 * 1 2 3 33 33 H 1.09005 * 109.47145 * 89.97466 * 7 6 4 34 34 H 1.08996 * 109.46983 * 209.97601 * 7 6 4 35 35 H 1.09002 * 109.46741 * 329.97890 * 7 6 4 36 36 H 1.08996 * 109.47636 * 210.00121 * 9 8 6 37 37 H 1.09005 * 109.47049 * 330.00830 * 9 8 6 38 38 H 1.08997 * 110.06899 * 267.93852 * 13 12 10 39 39 H 1.09001 * 110.06967 * 29.46973 * 13 12 10 40 40 H 1.09008 * 109.46819 * 301.38061 * 15 14 13 41 41 H 1.09000 * 109.46957 * 61.37311 * 15 14 13 42 42 H 1.08997 * 109.47393 * 181.38128 * 15 14 13 43 43 H 1.08994 * 110.38475 * 255.10935 * 16 14 13 44 44 H 1.09005 * 110.38927 * 17.48824 * 16 14 13 45 45 H 0.96998 * 120.00062 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.28520 * 280.44238 * 26 17 16 47 47 H 1.09003 * 111.34581 * 157.47704 * 26 17 16 48 48 H 1.08997 * 109.47044 * 182.00371 * 28 27 26 49 49 H 1.09000 * 109.47389 * 302.01027 * 28 27 26 50 50 H 1.09005 * 109.46764 * 62.00951 * 28 27 26 51 51 H 1.09006 * 110.06550 * 330.53233 * 29 12 10 52 52 H 1.08996 * 110.07138 * 92.00380 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0034 5 1 4.3909 1.2080 -0.0061 6 6 3.6143 -0.7153 0.0038 7 6 4.8351 -1.5988 0.0089 8 6 2.3272 -1.1330 0.0060 9 6 1.8600 -2.5657 0.0131 10 6 1.7045 -3.0363 1.4362 11 8 1.9485 -2.2824 2.3544 12 7 1.2942 -4.2950 1.6888 13 6 0.9535 -5.3255 0.6943 14 6 1.3238 -6.6784 1.3308 15 6 0.3176 -7.7830 1.0017 16 6 2.7602 -7.0600 0.9156 17 7 3.3923 -7.5561 2.1598 18 6 4.2448 -8.6181 2.3033 19 1 4.3345 -9.3491 1.5135 20 6 4.9935 -8.7550 3.4642 21 7 5.0273 -7.7773 4.3446 22 14 5.9530 -10.3270 3.7767 23 1 5.7510 -11.2640 2.6425 24 1 7.3978 -10.0082 3.9033 25 1 5.4735 -10.9583 5.0324 26 6 2.8861 -6.6467 3.2397 27 6 1.4121 -6.4016 2.8541 28 6 0.4534 -7.2823 3.6580 29 6 1.0927 -4.9058 3.0129 30 1 -0.3633 0.0054 1.0277 31 1 -0.3633 0.8873 -0.5185 32 1 -0.3633 -0.8927 -0.5091 33 1 5.1294 -1.8060 1.0378 34 1 4.6077 -2.5357 -0.4997 35 1 5.6513 -1.0937 -0.5077 36 1 0.9012 -2.6378 -0.5003 37 1 2.5935 -3.1896 -0.4977 38 1 -0.1133 -5.2932 0.4727 39 1 1.5303 -5.1706 -0.2175 40 1 -0.6724 -7.4883 1.3503 41 1 0.2910 -7.9408 -0.0765 42 1 0.6170 -8.7066 1.4969 43 1 2.7411 -7.8454 0.1601 44 1 3.2925 -6.1853 0.5418 45 1 5.5502 -7.8731 5.1560 46 1 3.4410 -5.7085 3.2346 47 1 2.9487 -7.1206 4.2192 48 1 -0.5695 -7.1013 3.3279 49 1 0.7056 -8.3311 3.5012 50 1 0.5413 -7.0420 4.7175 51 1 1.7679 -4.4541 3.7397 52 1 0.0586 -4.7749 3.3317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982799458.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:17 Heat of formation + Delta-G solvation = 38.666103 kcal Electronic energy + Delta-G solvation = -32292.352370 eV Core-core repulsion = 28292.900940 eV Total energy + Delta-G solvation = -3999.451430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.39980 -41.63038 -39.59182 -36.37887 -34.52153 -34.37444 -33.94950 -33.05120 -32.32108 -30.31024 -28.70965 -28.39434 -27.72742 -26.97245 -26.38918 -26.18515 -23.79900 -21.67332 -21.29463 -20.88545 -19.87987 -19.15825 -18.68007 -18.21731 -17.80326 -16.82002 -16.69483 -16.32860 -15.75241 -15.74065 -15.56101 -15.24685 -14.82520 -14.69817 -14.50563 -14.34245 -14.18617 -14.10222 -13.93564 -13.39395 -13.32130 -13.27206 -13.19893 -13.12614 -13.06745 -12.94208 -12.81560 -12.72422 -12.59662 -12.50322 -12.40205 -12.06431 -11.88688 -11.69942 -11.50258 -11.37391 -11.13928 -11.06885 -10.82813 -10.67083 -10.19190 -9.55242 -9.35210 -8.81806 -7.86198 -5.21103 0.87942 1.46291 1.46836 1.57258 1.60652 1.76495 1.96483 2.28315 2.50601 3.33050 3.47895 3.55880 3.70054 3.73223 3.85447 3.96253 4.04508 4.15273 4.20871 4.27008 4.39384 4.40551 4.46864 4.51505 4.55328 4.58518 4.66503 4.74440 4.80276 4.85027 4.85690 4.93070 4.97274 5.00134 5.01930 5.06197 5.08544 5.13888 5.22205 5.25331 5.31495 5.31949 5.35868 5.49054 5.51586 5.56834 5.70501 5.74295 5.82847 6.20958 6.41657 6.71695 6.73561 7.03369 7.30543 7.74078 8.53531 9.27247 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003187 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.457957 B = 8784.199870 C = 9851.990928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.082 3.918 3 N -0.332 5.332 4 N -0.475 5.475 5 H 0.447 0.553 6 C 0.100 3.900 7 C -0.094 4.094 8 C -0.239 4.239 9 C -0.045 4.045 10 C 0.526 3.474 11 O -0.588 6.588 12 N -0.615 5.615 13 C 0.115 3.885 14 C -0.073 4.073 15 C -0.115 4.115 16 C 0.138 3.862 17 N -0.618 5.618 18 C -0.227 4.227 19 H 0.082 0.918 20 C -0.065 4.065 21 N -0.950 5.950 22 Si 0.972 3.028 23 H -0.261 1.261 24 H -0.298 1.298 25 H -0.294 1.294 26 C 0.187 3.813 27 C -0.084 4.084 28 C -0.112 4.112 29 C 0.123 3.877 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.014 0.986 45 H 0.245 0.755 46 H -0.022 1.022 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.049 0.951 50 H 0.042 0.958 51 H 0.038 0.962 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 8.749 -13.961 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 N -0.156 5.156 4 N -0.184 5.184 5 H 0.293 0.707 6 C -0.029 4.029 7 C -0.152 4.152 8 C -0.250 4.250 9 C -0.085 4.085 10 C 0.317 3.683 11 O -0.468 6.468 12 N -0.347 5.347 13 C -0.008 4.008 14 C -0.075 4.075 15 C -0.172 4.172 16 C 0.012 3.988 17 N -0.342 5.342 18 C -0.357 4.357 19 H 0.099 0.901 20 C -0.258 4.258 21 N -0.599 5.599 22 Si 0.800 3.200 23 H -0.186 1.186 24 H -0.225 1.225 25 H -0.221 1.221 26 C 0.062 3.938 27 C -0.086 4.086 28 C -0.170 4.170 29 C 0.000 4.000 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.032 0.968 45 H 0.054 0.946 46 H -0.004 1.004 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.068 0.932 50 H 0.061 0.939 51 H 0.056 0.944 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.726 10.405 -13.404 20.626 hybrid contribution 1.974 -1.030 1.262 2.559 sum -9.752 9.375 -12.142 18.177 Atomic orbital electron populations 1.20300 0.84997 1.04730 1.03138 1.22663 0.98247 0.89987 0.97550 1.77157 0.87374 1.23274 1.27767 1.46103 1.07255 1.04964 1.60094 0.70724 1.21234 0.97664 0.85249 0.98802 1.20552 0.92824 0.98599 1.03275 1.19331 0.91736 0.95488 1.18490 1.19906 1.05444 0.91590 0.91588 1.21024 0.75133 0.79522 0.92632 1.90672 1.52260 1.55163 1.48736 1.48571 1.66024 1.11560 1.08541 1.22401 1.02409 0.84413 0.91533 1.22338 0.96201 0.95809 0.93185 1.21591 0.97421 0.96118 1.02085 1.21928 0.91485 0.96269 0.89075 1.45618 1.52607 1.32669 1.03310 1.19407 1.14637 0.99349 1.02264 0.90076 1.25648 1.00731 1.00763 0.98688 1.70135 1.45449 1.32601 1.11676 0.85110 0.77489 0.79580 0.77772 1.18550 1.22518 1.22146 1.21595 0.88994 0.90301 0.92956 1.22345 0.96402 0.93375 0.96520 1.21562 0.98469 0.98635 0.98310 1.21908 1.00556 0.91901 0.85670 0.91136 0.89916 0.88130 0.91573 0.88695 0.88389 0.85035 0.86879 0.87641 0.88504 0.90307 0.90584 0.93796 0.92361 0.96850 0.94636 1.00432 0.93737 0.89528 0.93230 0.93891 0.94380 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.26 71.24 0.73 -0.63 16 2 C 0.08 2.14 7.22 43.10 0.31 2.45 16 3 N -0.33 -9.38 12.70 -47.38 -0.60 -9.98 16 4 N -0.47 -11.41 7.36 -48.00 -0.35 -11.77 16 5 H 0.45 7.79 8.96 -213.33 -1.91 5.88 16 6 C 0.10 2.47 7.21 41.40 0.30 2.77 16 7 C -0.09 -1.90 10.22 71.24 0.73 -1.17 16 8 C -0.24 -6.13 4.59 -20.14 -0.09 -6.22 16 9 C -0.04 -0.96 4.76 29.10 0.14 -0.83 16 10 C 0.53 16.14 7.87 87.66 0.69 16.83 16 11 O -0.59 -24.04 16.26 -3.03 -0.05 -24.09 16 12 N -0.61 -17.54 3.32 -814.70 -2.70 -20.24 16 13 C 0.11 2.40 5.80 86.59 0.50 2.90 16 14 C -0.07 -2.03 1.08 -50.67 -0.05 -2.08 16 15 C -0.11 -2.48 7.53 71.98 0.54 -1.94 16 16 C 0.14 5.06 6.32 86.52 0.55 5.61 16 17 N -0.62 -30.32 3.41 -683.65 -2.33 -32.65 16 18 C -0.23 -12.33 10.35 84.03 0.87 -11.46 16 19 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 20 C -0.06 -3.66 5.40 84.86 0.46 -3.21 16 21 N -0.95 -57.82 10.87 21.65 0.24 -57.59 16 22 Si 0.97 45.33 29.56 68.60 2.03 47.35 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 C 0.19 9.06 5.02 86.15 0.43 9.49 16 27 C -0.08 -2.87 1.06 -50.76 -0.05 -2.93 16 28 C -0.11 -3.36 7.45 71.98 0.54 -2.82 16 29 C 0.12 4.03 5.94 86.51 0.51 4.54 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.31 7.25 -2.39 -0.02 1.29 16 33 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.09 1.74 7.15 -2.39 -0.02 1.73 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.13 1.87 7.26 -2.39 -0.02 1.85 16 37 H 0.11 2.05 6.87 -2.38 -0.02 2.03 16 38 H 0.11 1.48 7.93 -2.39 -0.02 1.46 16 39 H 0.10 1.66 6.79 -2.39 -0.02 1.64 16 40 H 0.08 1.31 7.09 -2.38 -0.02 1.30 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.04 1.18 7.16 -2.39 -0.02 1.16 16 43 H 0.06 1.99 7.90 -2.39 -0.02 1.97 16 44 H 0.01 0.52 7.55 -2.38 -0.02 0.50 16 45 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 46 H -0.02 -1.25 7.52 -2.39 -0.02 -1.27 16 47 H 0.04 2.48 6.37 -2.39 -0.02 2.47 16 48 H 0.09 1.90 7.10 -2.39 -0.02 1.89 16 49 H 0.05 1.65 7.16 -2.39 -0.02 1.63 16 50 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 51 H 0.04 1.54 7.35 -2.38 -0.02 1.53 16 52 H 0.08 2.29 7.88 -2.39 -0.02 2.27 16 Total: -1.00 -81.48 403.16 2.34 -79.14 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.98 Total: 18.51 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 7.10 Total: 11.30 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -5.75 Total: -132.22 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -81.48 2.34 -79.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982799458.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.804 kcal (2) G-P(sol) polarization free energy of solvation -81.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds