Wall clock time and date at job start Wed Apr 1 2020 03:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30832 * 125.90106 * 2 1 4 4 N 1.40082 * 108.20660 * 179.97438 * 3 2 1 5 5 H 0.97007 * 126.03686 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92462 * 359.75568 * 4 3 2 7 7 C 1.50703 * 126.12684 * 180.23908 * 6 4 3 8 8 C 1.35310 * 107.74857 * 0.39292 * 6 4 3 9 9 C 1.50700 * 126.04619 * 179.87246 * 8 6 4 10 10 H 1.09003 * 109.46442 * 3.94704 * 9 8 6 11 11 C 1.53001 * 109.47419 * 243.95124 * 9 8 6 12 12 C 1.50696 * 109.47517 * 123.94757 * 9 8 6 13 13 O 1.21282 * 119.99976 * 0.02562 * 12 9 8 14 14 N 1.34774 * 120.00242 * 180.02562 * 12 9 8 15 15 C 1.46496 * 120.00027 * 180.02562 * 14 12 9 16 16 C 1.51220 * 111.06798 * 68.33860 * 15 14 12 17 17 C 1.55055 * 104.91441 * 84.40930 * 16 15 14 18 18 C 1.56283 * 105.91830 * 6.67712 * 17 16 15 19 19 C 1.50527 * 101.75679 * 24.63930 * 18 17 16 20 20 H 1.08995 * 108.15407 * 66.93364 * 19 18 17 21 21 N 1.42711 * 128.13070 * 198.72291 * 19 18 17 22 22 C 1.36942 * 127.10262 * 331.67688 * 21 19 18 23 23 H 1.08003 * 119.99398 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00292 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99708 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00064 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47288 * 89.99893 * 26 24 22 28 28 H 1.48502 * 109.46867 * 210.00132 * 26 24 22 29 29 H 1.48503 * 109.47105 * 329.99861 * 26 24 22 30 30 C 1.49291 * 105.79721 * 151.68198 * 21 19 18 31 31 C 1.52135 * 111.08322 * 288.29591 * 15 14 12 32 32 H 1.09007 * 109.46971 * 275.49835 * 1 2 3 33 33 H 1.08994 * 109.47226 * 35.49522 * 1 2 3 34 34 H 1.09000 * 109.47592 * 155.49963 * 1 2 3 35 35 H 1.08996 * 109.47229 * 270.18064 * 7 6 4 36 36 H 1.09002 * 109.47351 * 30.17942 * 7 6 4 37 37 H 1.08995 * 109.47188 * 150.18151 * 7 6 4 38 38 H 1.08998 * 109.47083 * 54.53055 * 11 9 8 39 39 H 1.08990 * 109.47093 * 174.53503 * 11 9 8 40 40 H 1.09002 * 109.46855 * 294.53441 * 11 9 8 41 41 H 0.97000 * 119.99914 * 359.97438 * 14 12 9 42 42 H 1.08998 * 110.41112 * 202.63727 * 16 15 14 43 43 H 1.09006 * 110.40643 * 325.07896 * 16 15 14 44 44 H 1.09003 * 109.85314 * 247.73389 * 17 16 15 45 45 H 1.08997 * 110.48372 * 125.95509 * 17 16 15 46 46 H 1.08998 * 110.96867 * 266.51883 * 18 17 16 47 47 H 1.08998 * 110.97157 * 142.75439 * 18 17 16 48 48 H 0.96998 * 120.00271 * 179.97438 * 25 24 22 49 49 H 1.08999 * 110.05443 * 110.59543 * 30 21 19 50 50 H 1.09009 * 110.04644 * 232.07287 * 30 21 19 51 51 H 1.09005 * 111.14502 * 43.94154 * 31 15 14 52 52 H 1.08991 * 111.14839 * 168.16982 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 1 4.3909 1.2079 0.0011 6 6 3.6142 -0.7154 0.0064 7 6 4.8350 -1.5990 0.0142 8 6 2.3272 -1.1331 0.0006 9 6 1.8598 -2.5658 0.0013 10 1 2.7215 -3.2289 0.0780 11 6 1.1062 -2.8571 -1.2980 12 6 0.9436 -2.7948 1.1756 13 8 0.6942 -1.8842 1.9368 14 7 0.4013 -4.0116 1.3799 15 6 -0.4899 -4.2341 2.5212 16 6 -1.7917 -3.4843 2.3486 17 6 -2.6781 -4.4174 1.4839 18 6 -1.8830 -5.7556 1.3444 19 6 -1.0071 -5.7209 2.5681 20 1 -1.6467 -5.8094 3.4462 21 7 0.1848 -6.4643 2.8199 22 6 0.5123 -7.6954 2.3175 23 1 -0.1688 -8.2058 1.6526 24 6 1.7195 -8.2873 2.6628 25 7 2.5496 -7.6650 3.4726 26 14 2.1664 -9.9664 1.9770 27 1 2.8993 -9.7989 0.6964 28 1 3.0276 -10.6852 2.9500 29 1 0.9274 -10.7498 1.7394 30 6 1.0011 -5.6227 3.7441 31 6 0.2865 -4.2360 3.8295 32 1 -0.3633 0.0985 1.0230 33 1 -0.3633 0.8366 -0.5967 34 1 -0.3634 -0.9351 -0.4262 35 1 5.1345 -1.8138 -1.0115 36 1 5.6485 -1.0902 0.5313 37 1 4.6049 -2.5320 0.5285 38 1 1.7363 -2.5991 -2.1492 39 1 0.8528 -3.9162 -1.3414 40 1 0.1926 -2.2633 -1.3291 41 1 0.6004 -4.7399 0.7709 42 1 -2.2654 -3.3174 3.3160 43 1 -1.6194 -2.5356 1.8400 44 1 -2.8377 -3.9712 0.5022 45 1 -3.6342 -4.5981 1.9750 46 1 -1.2825 -5.7595 0.4347 47 1 -2.5552 -6.6133 1.3700 48 1 3.3930 -8.0787 3.7142 49 1 1.0420 -6.0833 4.7311 50 1 2.0085 -5.5000 3.3463 51 1 1.0104 -3.4215 3.8584 52 1 -0.3862 -4.1923 4.6860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992341489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:34 Heat of formation + Delta-G solvation = 67.107246 kcal Electronic energy + Delta-G solvation = -33081.149310 eV Core-core repulsion = 29082.931181 eV Total energy + Delta-G solvation = -3998.218129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.42606 -40.33658 -38.10633 -34.43937 -34.10389 -33.33206 -32.82550 -31.66449 -30.32141 -29.56102 -27.93141 -26.93179 -26.73175 -25.79744 -24.21067 -23.93001 -21.07466 -20.44143 -20.06746 -19.64634 -18.95699 -18.54460 -17.41945 -16.48067 -16.19736 -15.72107 -15.18917 -14.84442 -14.75907 -14.56408 -13.99917 -13.87464 -13.75203 -13.58605 -13.37309 -13.22816 -12.86380 -12.57620 -12.50001 -12.34663 -12.31105 -12.11550 -12.01440 -11.78740 -11.55478 -11.38833 -11.34183 -11.16970 -11.01357 -10.90993 -10.76401 -10.44996 -10.28815 -10.22613 -10.00581 -9.92765 -9.68539 -9.40733 -9.08775 -8.97822 -8.68150 -8.33124 -8.24791 -6.87117 -5.76519 -3.10960 1.93021 2.82032 2.92325 3.24646 3.35209 3.41729 3.43218 3.83518 4.43845 4.65451 4.66708 4.74625 4.96246 5.05303 5.21981 5.25428 5.28940 5.33246 5.37143 5.41065 5.46917 5.55049 5.62911 5.73345 5.78081 5.79173 5.85833 5.86710 5.94178 5.99480 6.02259 6.12785 6.15690 6.18656 6.20708 6.29435 6.33335 6.37734 6.40984 6.47661 6.54647 6.70438 6.82197 6.86052 6.94634 7.31794 7.35750 7.52327 7.60048 7.76632 7.81897 8.18391 8.22112 8.88222 9.11634 9.78298 10.47943 11.35544 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.003978 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.169654 B = 7036.302565 C = 8311.211013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.118 3.882 3 N -0.308 5.308 4 N -0.482 5.482 5 H 0.434 0.566 6 C 0.090 3.910 7 C -0.096 4.096 8 C -0.207 4.207 9 C -0.034 4.034 10 H 0.098 0.902 11 C -0.141 4.141 12 C 0.518 3.482 13 O -0.539 6.539 14 N -0.691 5.691 15 C 0.136 3.864 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.113 4.113 19 C 0.156 3.844 20 H 0.020 0.980 21 N -0.584 5.584 22 C -0.230 4.230 23 H 0.079 0.921 24 C -0.004 4.004 25 N -0.918 5.918 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.180 3.820 31 C -0.138 4.138 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.252 0.748 49 H 0.033 0.967 50 H 0.064 0.936 51 H 0.067 0.933 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 11.818 -9.032 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.049 4.049 3 N -0.131 5.131 4 N -0.190 5.190 5 H 0.277 0.723 6 C -0.038 4.038 7 C -0.154 4.154 8 C -0.219 4.219 9 C -0.057 4.057 10 H 0.116 0.884 11 C -0.198 4.198 12 C 0.303 3.697 13 O -0.416 6.416 14 N -0.342 5.342 15 C 0.048 3.952 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.152 4.152 19 C 0.046 3.954 20 H 0.038 0.962 21 N -0.307 5.307 22 C -0.358 4.358 23 H 0.097 0.903 24 C -0.200 4.200 25 N -0.565 5.565 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 C 0.056 3.944 31 C -0.177 4.177 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.237 0.763 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.051 0.949 50 H 0.082 0.918 51 H 0.086 0.914 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.485 13.523 -8.443 16.011 hybrid contribution 1.024 -1.908 -0.415 2.204 sum -0.461 11.615 -8.858 14.615 Atomic orbital electron populations 1.20279 0.87010 1.02104 1.03498 1.22009 0.96747 0.89731 0.96429 1.77236 0.86345 1.22370 1.27168 1.46021 1.07280 1.04578 1.61093 0.72256 1.20788 0.96744 0.85052 1.01254 1.20498 0.92876 0.98746 1.03278 1.19087 0.91076 0.94781 1.16940 1.19550 0.98587 0.93039 0.94484 0.88405 1.21823 1.00458 1.01902 0.95635 1.20327 0.80598 0.82631 0.86113 1.90634 1.61140 1.42665 1.47159 1.45709 1.47894 1.11479 1.29093 1.21437 0.88648 0.98796 0.86334 1.21742 0.94590 0.98437 1.00166 1.22705 0.98173 0.95116 0.99435 1.21830 0.98006 0.96572 0.98794 1.20843 0.90012 0.88945 0.95594 0.96242 1.43669 1.16296 1.17165 1.53617 1.19013 1.01420 0.92155 1.23219 0.90348 1.24773 0.97027 0.98587 0.99644 1.69921 1.10637 1.37848 1.38091 0.86187 0.78056 0.83841 0.78067 1.21639 1.21774 1.20740 1.21988 0.94307 0.84720 0.93384 1.22763 0.99706 1.00078 0.95151 0.89584 0.91965 0.90810 0.90173 0.91125 0.89254 0.91870 0.91739 0.91904 0.76319 0.91549 0.91072 0.92322 0.92076 0.91631 0.91965 0.93735 0.94896 0.91771 0.91444 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 8.83 36.01 0.32 -0.61 16 2 C 0.12 1.76 6.53 -82.40 -0.54 1.22 16 3 N -0.31 -4.66 12.70 33.67 0.43 -4.23 16 4 N -0.48 -5.91 7.36 33.48 0.25 -5.66 16 5 H 0.43 3.80 8.96 -182.60 -1.64 2.16 16 6 C 0.09 1.12 7.21 -82.27 -0.59 0.53 16 7 C -0.10 -0.87 10.09 36.01 0.36 -0.51 16 8 C -0.21 -2.93 4.43 -105.05 -0.47 -3.40 16 9 C -0.03 -0.46 2.85 -92.92 -0.26 -0.72 16 10 H 0.10 1.27 6.76 -51.93 -0.35 0.92 16 11 C -0.14 -1.56 8.88 37.16 0.33 -1.23 16 12 C 0.52 8.37 5.79 -10.99 -0.06 8.30 16 13 O -0.54 -10.02 11.77 5.56 0.07 -9.96 16 14 N -0.69 -11.45 4.28 -46.58 -0.20 -11.65 16 15 C 0.14 2.39 0.42 -130.71 -0.05 2.33 16 16 C -0.11 -1.69 6.01 -26.54 -0.16 -1.85 16 17 C -0.12 -1.57 6.91 -23.88 -0.17 -1.74 16 18 C -0.11 -1.81 6.47 -26.20 -0.17 -1.98 16 19 C 0.16 3.02 2.61 -68.71 -0.18 2.84 16 20 H 0.02 0.41 7.99 -51.93 -0.41 0.00 16 21 N -0.58 -13.70 3.12 -162.67 -0.51 -14.21 16 22 C -0.23 -5.91 10.29 -15.06 -0.15 -6.07 16 23 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 24 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 25 N -0.92 -25.70 10.55 55.49 0.59 -25.11 16 26 Si 0.91 21.04 29.55 -169.99 -5.02 16.01 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 C 0.18 4.22 5.33 -0.76 0.00 4.22 16 31 C -0.14 -2.72 6.22 -25.44 -0.16 -2.88 16 32 H 0.09 1.25 7.47 -51.92 -0.39 0.86 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.91 5.01 -51.93 -0.26 0.65 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.89 7.09 -51.93 -0.37 0.52 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.68 7.72 -51.93 -0.40 0.28 16 40 H 0.06 0.69 5.62 -51.93 -0.29 0.40 16 41 H 0.40 6.74 7.33 -40.82 -0.30 6.44 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.11 6.84 -51.93 -0.36 0.76 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.03 7.37 -51.93 -0.38 0.65 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.03 0.85 7.98 -51.93 -0.41 0.44 16 50 H 0.06 1.67 7.05 -51.92 -0.37 1.31 16 51 H 0.07 1.39 7.17 -51.93 -0.37 1.01 16 52 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -31.41 394.79 -10.16 -41.57 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -9.65 Total: 9.02 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.05 Total: -1.72 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.55 Total: -60.87 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.41 -10.16 -41.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992341489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.679 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds