Wall clock time and date at job start Wed Apr 1 2020 03:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30832 * 125.90106 * 2 1 4 4 N 1.40082 * 108.20660 * 179.97438 * 3 2 1 5 5 H 0.97007 * 126.03686 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92462 * 359.75568 * 4 3 2 7 7 C 1.50703 * 126.12684 * 180.23908 * 6 4 3 8 8 C 1.35310 * 107.74857 * 0.39292 * 6 4 3 9 9 C 1.50700 * 126.04619 * 179.87246 * 8 6 4 10 10 H 1.09003 * 109.46442 * 3.94704 * 9 8 6 11 11 C 1.53001 * 109.47419 * 243.95124 * 9 8 6 12 12 C 1.50696 * 109.47517 * 123.94757 * 9 8 6 13 13 O 1.21282 * 119.99976 * 0.02562 * 12 9 8 14 14 N 1.34774 * 120.00242 * 180.02562 * 12 9 8 15 15 C 1.46496 * 120.00027 * 180.02562 * 14 12 9 16 16 C 1.51220 * 111.06798 * 68.33860 * 15 14 12 17 17 C 1.55055 * 104.91441 * 84.40930 * 16 15 14 18 18 C 1.56283 * 105.91830 * 6.67712 * 17 16 15 19 19 C 1.50527 * 101.75679 * 24.63930 * 18 17 16 20 20 H 1.08995 * 108.15407 * 66.93364 * 19 18 17 21 21 N 1.42711 * 128.13070 * 198.72291 * 19 18 17 22 22 C 1.36942 * 127.10262 * 331.67688 * 21 19 18 23 23 H 1.08003 * 119.99398 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00292 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99708 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00064 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47288 * 89.99893 * 26 24 22 28 28 H 1.48502 * 109.46867 * 210.00132 * 26 24 22 29 29 H 1.48503 * 109.47105 * 329.99861 * 26 24 22 30 30 C 1.49291 * 105.79721 * 151.68198 * 21 19 18 31 31 C 1.52135 * 111.08322 * 288.29591 * 15 14 12 32 32 H 1.09007 * 109.46971 * 275.49835 * 1 2 3 33 33 H 1.08994 * 109.47226 * 35.49522 * 1 2 3 34 34 H 1.09000 * 109.47592 * 155.49963 * 1 2 3 35 35 H 1.08996 * 109.47229 * 270.18064 * 7 6 4 36 36 H 1.09002 * 109.47351 * 30.17942 * 7 6 4 37 37 H 1.08995 * 109.47188 * 150.18151 * 7 6 4 38 38 H 1.08998 * 109.47083 * 54.53055 * 11 9 8 39 39 H 1.08990 * 109.47093 * 174.53503 * 11 9 8 40 40 H 1.09002 * 109.46855 * 294.53441 * 11 9 8 41 41 H 0.97000 * 119.99914 * 359.97438 * 14 12 9 42 42 H 1.08998 * 110.41112 * 202.63727 * 16 15 14 43 43 H 1.09006 * 110.40643 * 325.07896 * 16 15 14 44 44 H 1.09003 * 109.85314 * 247.73389 * 17 16 15 45 45 H 1.08997 * 110.48372 * 125.95509 * 17 16 15 46 46 H 1.08998 * 110.96867 * 266.51883 * 18 17 16 47 47 H 1.08998 * 110.97157 * 142.75439 * 18 17 16 48 48 H 0.96998 * 120.00271 * 179.97438 * 25 24 22 49 49 H 1.08999 * 110.05443 * 110.59543 * 30 21 19 50 50 H 1.09009 * 110.04644 * 232.07287 * 30 21 19 51 51 H 1.09005 * 111.14502 * 43.94154 * 31 15 14 52 52 H 1.08991 * 111.14839 * 168.16982 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 1 4.3909 1.2079 0.0011 6 6 3.6142 -0.7154 0.0064 7 6 4.8350 -1.5990 0.0142 8 6 2.3272 -1.1331 0.0006 9 6 1.8598 -2.5658 0.0013 10 1 2.7215 -3.2289 0.0780 11 6 1.1062 -2.8571 -1.2980 12 6 0.9436 -2.7948 1.1756 13 8 0.6942 -1.8842 1.9368 14 7 0.4013 -4.0116 1.3799 15 6 -0.4899 -4.2341 2.5212 16 6 -1.7917 -3.4843 2.3486 17 6 -2.6781 -4.4174 1.4839 18 6 -1.8830 -5.7556 1.3444 19 6 -1.0071 -5.7209 2.5681 20 1 -1.6467 -5.8094 3.4462 21 7 0.1848 -6.4643 2.8199 22 6 0.5123 -7.6954 2.3175 23 1 -0.1688 -8.2058 1.6526 24 6 1.7195 -8.2873 2.6628 25 7 2.5496 -7.6650 3.4726 26 14 2.1664 -9.9664 1.9770 27 1 2.8993 -9.7989 0.6964 28 1 3.0276 -10.6852 2.9500 29 1 0.9274 -10.7498 1.7394 30 6 1.0011 -5.6227 3.7441 31 6 0.2865 -4.2360 3.8295 32 1 -0.3633 0.0985 1.0230 33 1 -0.3633 0.8366 -0.5967 34 1 -0.3634 -0.9351 -0.4262 35 1 5.1345 -1.8138 -1.0115 36 1 5.6485 -1.0902 0.5313 37 1 4.6049 -2.5320 0.5285 38 1 1.7363 -2.5991 -2.1492 39 1 0.8528 -3.9162 -1.3414 40 1 0.1926 -2.2633 -1.3291 41 1 0.6004 -4.7399 0.7709 42 1 -2.2654 -3.3174 3.3160 43 1 -1.6194 -2.5356 1.8400 44 1 -2.8377 -3.9712 0.5022 45 1 -3.6342 -4.5981 1.9750 46 1 -1.2825 -5.7595 0.4347 47 1 -2.5552 -6.6133 1.3700 48 1 3.3930 -8.0787 3.7142 49 1 1.0420 -6.0833 4.7311 50 1 2.0085 -5.5000 3.3463 51 1 1.0104 -3.4215 3.8584 52 1 -0.3862 -4.1923 4.6860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992341489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:33 Heat of formation + Delta-G solvation = 47.866436 kcal Electronic energy + Delta-G solvation = -33081.983655 eV Core-core repulsion = 29082.931181 eV Total energy + Delta-G solvation = -3999.052473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.47651 -41.74419 -39.46334 -36.11904 -35.21042 -34.40683 -34.09292 -33.42627 -31.65138 -30.84966 -28.93308 -28.49175 -27.65840 -27.25536 -25.91428 -25.15142 -22.41836 -21.93654 -21.18847 -21.07959 -20.10955 -19.90351 -18.53864 -18.28200 -17.37167 -17.25028 -16.38989 -16.26137 -16.02065 -15.90601 -15.67006 -15.38054 -14.88738 -14.68980 -14.54303 -14.14346 -14.07638 -14.00313 -13.68184 -13.57893 -13.37866 -13.27151 -13.08706 -13.01321 -12.97746 -12.83540 -12.78452 -12.54816 -12.47640 -12.18534 -12.12330 -12.02396 -11.95696 -11.74235 -11.48673 -11.28434 -11.25730 -10.91208 -10.66957 -10.33452 -10.11100 -9.71105 -9.28339 -8.81593 -7.78901 -5.14301 0.93655 1.51308 1.52674 1.60558 1.73466 1.98044 2.02241 2.52605 2.57253 3.17133 3.41401 3.72251 3.77926 3.79161 3.93009 3.98584 4.17259 4.17808 4.29224 4.31967 4.39437 4.44711 4.48382 4.48548 4.55531 4.65092 4.70366 4.72136 4.80004 4.87721 4.94706 4.95439 5.01315 5.04623 5.07178 5.13291 5.15139 5.18989 5.20428 5.26266 5.31991 5.36112 5.40771 5.55536 5.61765 5.66430 5.74496 5.79546 5.95364 6.23139 6.49490 6.79904 6.89529 7.09653 7.57817 7.82319 8.55161 9.32919 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.003978 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.169654 B = 7036.302565 C = 8311.211013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.102 3.898 3 N -0.338 5.338 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.095 3.905 7 C -0.094 4.094 8 C -0.233 4.233 9 C -0.027 4.027 10 H 0.101 0.899 11 C -0.135 4.135 12 C 0.518 3.482 13 O -0.564 6.564 14 N -0.691 5.691 15 C 0.145 3.855 16 C -0.106 4.106 17 C -0.102 4.102 18 C -0.108 4.108 19 C 0.145 3.855 20 H 0.010 0.990 21 N -0.596 5.596 22 C -0.230 4.230 23 H 0.088 0.912 24 C -0.060 4.060 25 N -0.951 5.951 26 Si 0.971 3.029 27 H -0.283 1.283 28 H -0.304 1.304 29 H -0.271 1.271 30 C 0.193 3.807 31 C -0.127 4.127 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.401 0.599 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.244 0.756 49 H -0.005 1.005 50 H 0.032 0.968 51 H 0.056 0.944 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 11.961 -11.248 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 N -0.162 5.162 4 N -0.183 5.183 5 H 0.294 0.706 6 C -0.034 4.034 7 C -0.152 4.152 8 C -0.245 4.245 9 C -0.049 4.049 10 H 0.119 0.881 11 C -0.192 4.192 12 C 0.305 3.695 13 O -0.443 6.443 14 N -0.341 5.341 15 C 0.057 3.943 16 C -0.145 4.145 17 C -0.140 4.140 18 C -0.147 4.147 19 C 0.036 3.964 20 H 0.027 0.973 21 N -0.319 5.319 22 C -0.358 4.358 23 H 0.106 0.894 24 C -0.253 4.253 25 N -0.600 5.600 26 Si 0.800 3.200 27 H -0.210 1.210 28 H -0.231 1.231 29 H -0.196 1.196 30 C 0.069 3.931 31 C -0.167 4.167 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.237 0.763 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.053 0.947 49 H 0.014 0.986 50 H 0.050 0.950 51 H 0.075 0.925 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.451 13.688 -10.687 17.538 hybrid contribution 1.352 -1.919 0.349 2.374 sum -1.099 11.769 -10.338 15.703 Atomic orbital electron populations 1.20250 0.86377 1.03110 1.02656 1.22299 0.97497 0.90034 0.96528 1.77160 0.87567 1.23083 1.28360 1.46053 1.07069 1.04911 1.60286 0.70605 1.21269 0.97431 0.85319 0.99410 1.20604 0.91997 0.97721 1.04871 1.19283 0.91823 0.94860 1.18514 1.19518 0.98167 0.92960 0.94281 0.88137 1.21800 1.00450 1.02313 0.94628 1.20815 0.80329 0.81864 0.86487 1.90626 1.62022 1.43349 1.48254 1.45710 1.48021 1.11736 1.28633 1.21356 0.89479 0.97985 0.85453 1.21729 0.93287 0.98474 1.00988 1.22638 0.97916 0.92991 1.00443 1.21839 0.97557 0.98342 0.96920 1.21048 0.88976 0.89334 0.97059 0.97260 1.43773 1.17583 1.17063 1.53467 1.19391 1.01214 0.92894 1.22326 0.89391 1.25513 0.97360 1.01901 1.00502 1.70136 1.10781 1.39187 1.39881 0.85189 0.77731 0.79986 0.77078 1.21005 1.23093 1.19592 1.21641 0.93583 0.86571 0.91323 1.22603 0.99613 0.97111 0.97324 0.91326 0.90631 0.90027 0.87888 0.89263 0.90229 0.90540 0.91099 0.91720 0.76345 0.91074 0.91138 0.90092 0.90224 0.91300 0.91402 0.94655 0.98627 0.94973 0.92521 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 8.83 71.24 0.63 -1.05 16 2 C 0.10 2.99 6.53 43.11 0.28 3.28 16 3 N -0.34 -10.01 12.70 -47.38 -0.60 -10.61 16 4 N -0.47 -11.03 7.36 -48.01 -0.35 -11.39 16 5 H 0.45 7.19 8.96 -213.32 -1.91 5.28 16 6 C 0.10 2.23 7.21 41.41 0.30 2.53 16 7 C -0.09 -1.53 10.09 71.24 0.72 -0.81 16 8 C -0.23 -6.37 4.43 -20.14 -0.09 -6.46 16 9 C -0.03 -0.69 2.85 -12.29 -0.03 -0.73 16 10 H 0.10 2.52 6.76 -2.39 -0.02 2.51 16 11 C -0.13 -2.70 8.88 71.98 0.64 -2.06 16 12 C 0.52 16.43 5.79 87.66 0.51 16.94 16 13 O -0.56 -20.88 11.77 -3.04 -0.04 -20.91 16 14 N -0.69 -22.40 4.28 -419.67 -1.80 -24.19 16 15 C 0.15 5.01 0.42 4.33 0.00 5.01 16 16 C -0.11 -3.01 6.01 30.72 0.18 -2.83 16 17 C -0.10 -2.40 6.91 32.44 0.22 -2.18 16 18 C -0.11 -3.17 6.47 30.94 0.20 -2.97 16 19 C 0.14 5.48 2.61 46.48 0.12 5.60 16 20 H 0.01 0.40 7.99 -2.39 -0.02 0.38 16 21 N -0.60 -28.26 3.12 -668.56 -2.09 -30.34 16 22 C -0.23 -11.81 10.29 84.03 0.86 -10.94 16 23 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 24 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 25 N -0.95 -55.07 10.55 21.65 0.23 -54.84 16 26 Si 0.97 43.48 29.55 68.60 2.03 45.51 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 30 C 0.19 9.47 5.33 86.96 0.46 9.93 16 31 C -0.13 -5.13 6.22 31.43 0.20 -4.93 16 32 H 0.07 1.99 7.47 -2.38 -0.02 1.97 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.90 5.01 -2.39 -0.01 1.89 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.49 7.09 -2.39 -0.02 1.48 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.32 7.72 -2.39 -0.02 1.31 16 40 H 0.06 1.28 5.62 -2.39 -0.01 1.26 16 41 H 0.40 13.12 7.33 -92.71 -0.68 12.44 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 2.06 6.84 -2.38 -0.02 2.04 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 1.99 7.37 -2.39 -0.02 1.97 16 47 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 49 H 0.00 -0.25 7.98 -2.39 -0.02 -0.27 16 50 H 0.03 1.76 7.05 -2.38 -0.02 1.75 16 51 H 0.06 2.39 7.17 -2.38 -0.02 2.38 16 52 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -69.56 394.79 1.42 -68.15 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -1.64 Total: 33.03 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.67 Total: 5.60 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -4.61 Total: -131.37 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.04 Total: -20.91 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -69.56 1.42 -68.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992341489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.014 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds